data_3IV2 # _model_server_result.job_id ffBik-nAtyVLMyBjLfbjJg _model_server_result.datetime_utc '2024-11-29 01:37:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 3IV2 # _exptl.entry_id 3IV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IV2 _cell.length_a 61.959 _cell.length_b 61.959 _cell.length_c 206.288 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 A SG CYS 156 A CYS 156 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 56 B CYS 56 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 B SG CYS 156 B CYS 156 1_555 B SG CYS 209 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 108 A ASN 108 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 B O ASP 55 B ASP 55 1_555 H NA NA . B NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc2 B N GLY 58 B GLY 58 1_555 H NA NA . B NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3IV2 _atom_sites.fract_transf_matrix[1][1] 0.01614 _atom_sites.fract_transf_matrix[1][2] 0.009318 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 301 1 NAG NAG . D 3 GOL A 1 303 1 GOL GOL . E 3 GOL A 1 306 1 GOL GOL . F 4 SO4 A 1 307 1 SO4 SO4 . G 4 SO4 A 1 308 2 SO4 SO4 . H 5 NA B 1 300 1 NA NA . I 3 GOL B 1 302 1 GOL GOL . J 3 GOL B 1 304 1 GOL GOL . K 3 GOL B 1 305 1 GOL GOL . L 4 SO4 B 1 309 3 SO4 SO4 . M 4 SO4 B 1 310 4 SO4 SO4 . N 6 HOH A 1 401 1 HOH HOH . N 6 HOH A 2 403 3 HOH HOH . N 6 HOH A 3 404 4 HOH HOH . N 6 HOH A 4 406 6 HOH HOH . N 6 HOH A 5 409 9 HOH HOH . N 6 HOH A 6 410 10 HOH HOH . N 6 HOH A 7 412 12 HOH HOH . N 6 HOH A 8 413 13 HOH HOH . N 6 HOH A 9 415 15 HOH HOH . N 6 HOH A 10 421 21 HOH HOH . N 6 HOH A 11 423 23 HOH HOH . N 6 HOH A 12 427 27 HOH HOH . N 6 HOH A 13 429 29 HOH HOH . N 6 HOH A 14 430 30 HOH HOH . N 6 HOH A 15 431 31 HOH HOH . N 6 HOH A 16 435 35 HOH HOH . N 6 HOH A 17 436 36 HOH HOH . N 6 HOH A 18 439 39 HOH HOH . N 6 HOH A 19 440 40 HOH HOH . N 6 HOH A 20 443 43 HOH HOH . N 6 HOH A 21 446 46 HOH HOH . N 6 HOH A 22 448 48 HOH HOH . N 6 HOH A 23 450 50 HOH HOH . N 6 HOH A 24 454 54 HOH HOH . N 6 HOH A 25 456 59 HOH HOH . N 6 HOH A 26 458 62 HOH HOH . N 6 HOH A 27 462 75 HOH HOH . N 6 HOH A 28 464 78 HOH HOH . N 6 HOH A 29 466 82 HOH HOH . N 6 HOH A 30 468 91 HOH HOH . N 6 HOH A 31 469 92 HOH HOH . N 6 HOH A 32 470 96 HOH HOH . N 6 HOH A 33 473 107 HOH HOH . N 6 HOH A 34 475 113 HOH HOH . N 6 HOH A 35 478 121 HOH HOH . N 6 HOH A 36 479 135 HOH HOH . N 6 HOH A 37 481 140 HOH HOH . N 6 HOH A 38 482 142 HOH HOH . N 6 HOH A 39 483 150 HOH HOH . N 6 HOH A 40 484 152 HOH HOH . N 6 HOH A 41 485 160 HOH HOH . N 6 HOH A 42 486 165 HOH HOH . N 6 HOH A 43 488 195 HOH HOH . N 6 HOH A 44 492 201 HOH HOH . N 6 HOH A 45 493 202 HOH HOH . N 6 HOH A 46 494 203 HOH HOH . O 6 HOH B 1 402 2 HOH HOH . O 6 HOH B 2 405 5 HOH HOH . O 6 HOH B 3 408 8 HOH HOH . O 6 HOH B 4 411 11 HOH HOH . O 6 HOH B 5 414 14 HOH HOH . O 6 HOH B 6 416 16 HOH HOH . O 6 HOH B 7 418 18 HOH HOH . O 6 HOH B 8 422 22 HOH HOH . O 6 HOH B 9 424 24 HOH HOH . O 6 HOH B 10 425 25 HOH HOH . O 6 HOH B 11 432 32 HOH HOH . O 6 HOH B 12 445 45 HOH HOH . O 6 HOH B 13 447 47 HOH HOH . O 6 HOH B 14 449 49 HOH HOH . O 6 HOH B 15 455 55 HOH HOH . O 6 HOH B 16 457 60 HOH HOH . O 6 HOH B 17 459 63 HOH HOH . O 6 HOH B 18 460 68 HOH HOH . O 6 HOH B 19 461 72 HOH HOH . O 6 HOH B 20 463 77 HOH HOH . O 6 HOH B 21 465 80 HOH HOH . O 6 HOH B 22 467 83 HOH HOH . O 6 HOH B 23 471 97 HOH HOH . O 6 HOH B 24 472 99 HOH HOH . O 6 HOH B 25 474 108 HOH HOH . O 6 HOH B 26 476 115 HOH HOH . O 6 HOH B 27 477 118 HOH HOH . O 6 HOH B 28 480 138 HOH HOH . O 6 HOH B 29 487 167 HOH HOH . O 6 HOH B 30 489 198 HOH HOH . O 6 HOH B 31 490 199 HOH HOH . O 6 HOH B 32 491 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 1.634 11.525 5.654 1 75.95 ? C1 GOL 302 B 1 HETATM 2 O O1 GOL . . . I 3 1.819 12.915 5.478 1 75.74 ? O1 GOL 302 B 1 HETATM 3 C C2 GOL . . . I 3 0.255 11.135 5.13 1 72.73 ? C2 GOL 302 B 1 HETATM 4 O O2 GOL . . . I 3 -0.705 11.962 5.741 1 69.79 ? O2 GOL 302 B 1 HETATM 5 C C3 GOL . . . I 3 -0.05 9.675 5.446 1 72.19 ? C3 GOL 302 B 1 HETATM 6 O O3 GOL . . . I 3 0.037 8.889 4.273 1 70.03 ? O3 GOL 302 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #