data_3IVA # _model_server_result.job_id v3lbXPiBF0bi1Ui9PzcVqQ _model_server_result.datetime_utc '2024-11-10 03:34:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1303}' # _entry.id 3IVA # _exptl.entry_id 3IVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IVA _cell.length_a 107.006 _cell.length_b 107.006 _cell.length_c 141.185 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 42 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 690 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 95 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 743 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 427 n n N O2 NO3 sing 428 n n N O3 NO3 sing 429 n n # _atom_sites.entry_id 3IVA _atom_sites.fract_transf_matrix[1][1] 0.009345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B12 A 1 1301 1301 B12 B12 . C 3 SAH A 1 1401 1401 SAH SAH . D 4 NO3 A 1 1303 1303 NO3 NO3 . E 4 NO3 A 1 1304 1304 NO3 NO3 . F 4 NO3 A 1 1305 1305 NO3 NO3 . G 4 NO3 A 1 1306 1306 NO3 NO3 . H 5 HOH A 1 1310 1310 HOH WAT . H 5 HOH A 2 1311 1311 HOH WAT . H 5 HOH A 3 1313 1313 HOH WAT . H 5 HOH A 4 1315 1315 HOH WAT . H 5 HOH A 5 1316 1316 HOH WAT . H 5 HOH A 6 1319 1319 HOH WAT . H 5 HOH A 7 1321 1321 HOH WAT . H 5 HOH A 8 1324 1324 HOH WAT . H 5 HOH A 9 1325 1325 HOH WAT . H 5 HOH A 10 1329 1329 HOH WAT . H 5 HOH A 11 1330 1330 HOH WAT . H 5 HOH A 12 1331 1331 HOH WAT . H 5 HOH A 13 1332 1332 HOH WAT . H 5 HOH A 14 1333 1333 HOH WAT . H 5 HOH A 15 1335 1335 HOH WAT . H 5 HOH A 16 1337 1337 HOH WAT . H 5 HOH A 17 1339 1339 HOH WAT . H 5 HOH A 18 1342 1342 HOH WAT . H 5 HOH A 19 1354 1354 HOH WAT . H 5 HOH A 20 1358 1358 HOH WAT . H 5 HOH A 21 1368 1368 HOH WAT . H 5 HOH A 22 1373 1373 HOH WAT . H 5 HOH A 23 1378 1378 HOH WAT . H 5 HOH A 24 1385 1385 HOH WAT . H 5 HOH A 25 1389 1389 HOH WAT . H 5 HOH A 26 1390 1390 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . D 4 62.228 29.581 41.092 1 125.56 ? N NO3 1303 A 1 HETATM 2 O O1 NO3 . . . D 4 62.442 30.149 42.153 1 124.93 ? O1 NO3 1303 A 1 HETATM 3 O O2 NO3 . . . D 4 63.159 29.175 40.42 1 124.48 ? O2 NO3 1303 A 1 HETATM 4 O O3 NO3 . . . D 4 61.083 29.421 40.705 1 125.19 ? O3 NO3 1303 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #