data_3IVB # _model_server_result.job_id cbjR_SFUqiT0GpJDDx-AvA _model_server_result.datetime_utc '2024-11-04 22:56:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ivb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":5}' # _entry.id 3IVB # _exptl.entry_id 3IVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IVB _cell.length_a 44.021 _cell.length_b 44.021 _cell.length_c 266.84 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A SG CYS 23 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A OE2 GLU 26 A GLU 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc3 C ZN ZN . A ZN 1 1_555 I O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 D ZN ZN . A ZN 2 1_555 A OE1 GLU 92 A GLU 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 D ZN ZN . A ZN 2 1_555 I O HOH . A HOH 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? metalc ? metalc6 E ZN ZN . A ZN 3 1_555 I O HOH . A HOH 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 E ZN ZN . A ZN 3 1_555 A OE1 GLU 76 A GLU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc8 F ZN ZN . A ZN 4 1_555 A SG CYS 23 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc9 G ZN ZN . A ZN 5 1_555 A OE2 GLU 25 A GLU 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc10 G ZN ZN . A ZN 5 1_555 I O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 G ZN ZN . A ZN 5 1_555 I O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IVB _atom_sites.fract_transf_matrix[1][1] 0.022716 _atom_sites.fract_transf_matrix[1][2] 0.013115 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1 1 ZN ZN . D 3 ZN A 1 2 2 ZN ZN . E 3 ZN A 1 3 3 ZN ZN . F 3 ZN A 1 4 4 ZN ZN . G 3 ZN A 1 5 5 ZN ZN . H 4 CL A 1 167 1 CL CL . I 5 HOH A 1 6 6 HOH HOH . I 5 HOH A 2 7 7 HOH HOH . I 5 HOH A 3 8 8 HOH HOH . I 5 HOH A 4 9 9 HOH HOH . I 5 HOH A 5 11 11 HOH HOH . I 5 HOH A 6 12 12 HOH HOH . I 5 HOH A 7 14 14 HOH HOH . I 5 HOH A 8 15 15 HOH HOH . I 5 HOH A 9 16 16 HOH HOH . I 5 HOH A 10 17 17 HOH HOH . I 5 HOH A 11 18 18 HOH HOH . I 5 HOH A 12 19 19 HOH HOH . I 5 HOH A 13 20 20 HOH HOH . I 5 HOH A 14 21 21 HOH HOH . I 5 HOH A 15 168 1 HOH HOH . I 5 HOH A 16 169 2 HOH HOH . I 5 HOH A 17 170 3 HOH HOH . I 5 HOH A 18 171 4 HOH HOH . I 5 HOH A 19 172 5 HOH HOH . I 5 HOH A 20 173 22 HOH HOH . I 5 HOH A 21 174 23 HOH HOH . I 5 HOH A 22 175 24 HOH HOH . I 5 HOH A 23 176 25 HOH HOH . I 5 HOH A 24 177 26 HOH HOH . I 5 HOH A 25 178 27 HOH HOH . I 5 HOH A 26 179 28 HOH HOH . I 5 HOH A 27 180 29 HOH HOH . I 5 HOH A 28 181 30 HOH HOH . I 5 HOH A 29 182 31 HOH HOH . I 5 HOH A 30 183 32 HOH HOH . I 5 HOH A 31 184 33 HOH HOH . I 5 HOH A 32 185 34 HOH HOH . I 5 HOH A 33 186 36 HOH HOH . I 5 HOH A 34 187 37 HOH HOH . I 5 HOH A 35 188 38 HOH HOH . I 5 HOH A 36 189 39 HOH HOH . I 5 HOH A 37 190 40 HOH HOH . I 5 HOH A 38 191 41 HOH HOH . I 5 HOH A 39 192 42 HOH HOH . I 5 HOH A 40 193 43 HOH HOH . I 5 HOH A 41 194 44 HOH HOH . I 5 HOH A 42 195 45 HOH HOH . I 5 HOH A 43 196 47 HOH HOH . I 5 HOH A 44 197 48 HOH HOH . I 5 HOH A 45 198 49 HOH HOH . I 5 HOH A 46 199 50 HOH HOH . I 5 HOH A 47 200 51 HOH HOH . I 5 HOH A 48 201 52 HOH HOH . I 5 HOH A 49 202 53 HOH HOH . I 5 HOH A 50 203 54 HOH HOH . I 5 HOH A 51 204 55 HOH HOH . I 5 HOH A 52 205 57 HOH HOH . I 5 HOH A 53 206 58 HOH HOH . I 5 HOH A 54 207 59 HOH HOH . I 5 HOH A 55 208 60 HOH HOH . I 5 HOH A 56 209 61 HOH HOH . I 5 HOH A 57 210 62 HOH HOH . I 5 HOH A 58 211 63 HOH HOH . I 5 HOH A 59 212 65 HOH HOH . I 5 HOH A 60 213 66 HOH HOH . I 5 HOH A 61 214 67 HOH HOH . I 5 HOH A 62 215 68 HOH HOH . I 5 HOH A 63 216 69 HOH HOH . I 5 HOH A 64 217 70 HOH HOH . I 5 HOH A 65 218 71 HOH HOH . I 5 HOH A 66 219 72 HOH HOH . I 5 HOH A 67 220 73 HOH HOH . I 5 HOH A 68 221 74 HOH HOH . I 5 HOH A 69 222 75 HOH HOH . I 5 HOH A 70 223 76 HOH HOH . I 5 HOH A 71 224 77 HOH HOH . I 5 HOH A 72 225 78 HOH HOH . I 5 HOH A 73 226 79 HOH HOH . I 5 HOH A 74 227 81 HOH HOH . I 5 HOH A 75 228 82 HOH HOH . I 5 HOH A 76 229 83 HOH HOH . I 5 HOH A 77 230 84 HOH HOH . I 5 HOH A 78 231 86 HOH HOH . I 5 HOH A 79 232 87 HOH HOH . I 5 HOH A 80 233 88 HOH HOH . I 5 HOH A 81 234 89 HOH HOH . I 5 HOH A 82 235 90 HOH HOH . I 5 HOH A 83 236 91 HOH HOH . I 5 HOH A 84 237 92 HOH HOH . I 5 HOH A 85 238 93 HOH HOH . I 5 HOH A 86 239 94 HOH HOH . I 5 HOH A 87 240 95 HOH HOH . I 5 HOH A 88 241 96 HOH HOH . J 5 HOH M 1 10 10 HOH HOH . J 5 HOH M 2 13 13 HOH HOH . J 5 HOH M 3 35 35 HOH HOH . J 5 HOH M 4 46 46 HOH HOH . J 5 HOH M 5 56 56 HOH HOH . J 5 HOH M 6 64 64 HOH HOH . J 5 HOH M 7 80 80 HOH HOH . J 5 HOH M 8 85 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.568 _atom_site.Cartn_y -4.592 _atom_site.Cartn_z 9.376 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 5 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #