data_3IVI # _model_server_result.job_id fbCf_hnP01MSZ_3RHYFzGg _model_server_result.datetime_utc '2024-12-22 01:42:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ivi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":901}' # _entry.id 3IVI # _exptl.entry_id 3IVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.83 _cell.angle_gamma 90 _cell.entry_id 3IVI _cell.length_a 82.711 _cell.length_b 104.48 _cell.length_c 100.616 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,P 1 1 B,H,I,J,K,Q 2 1 C,L,M,N,O,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 161 A CYS 216 1_555 A SG CYS 365 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? disulf ? disulf2 A SG CYS 223 A CYS 278 1_555 A SG CYS 388 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? disulf ? disulf3 B SG CYS 161 B CYS 216 1_555 B SG CYS 365 B CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 B SG CYS 223 B CYS 278 1_555 B SG CYS 388 B CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? disulf ? disulf5 C SG CYS 161 C CYS 216 1_555 C SG CYS 365 C CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? disulf ? disulf6 C SG CYS 223 C CYS 278 1_555 C SG CYS 388 C CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 205 n n C1 C2 GOL sing 206 n n C1 H11 GOL sing 207 n n C1 H12 GOL sing 208 n n O1 HO1 GOL sing 209 n n C2 O2 GOL sing 210 n n C2 C3 GOL sing 211 n n C2 H2 GOL sing 212 n n O2 HO2 GOL sing 213 n n C3 O3 GOL sing 214 n n C3 H31 GOL sing 215 n n C3 H32 GOL sing 216 n n O3 HO3 GOL sing 217 n n # _atom_sites.entry_id 3IVI _atom_sites.fract_transf_matrix[1][1] 0.01209 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003202 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 899 899 SO4 SO4 . E 2 SO4 A 1 900 900 SO4 SO4 . F 3 GOL A 1 901 901 GOL GOL . G 4 2LI A 1 1 1 2LI LIG . H 2 SO4 B 1 899 899 SO4 SO4 . I 2 SO4 B 1 900 900 SO4 SO4 . J 3 GOL B 1 901 901 GOL GOL . K 4 2LI B 1 2 2 2LI LIG . L 2 SO4 C 1 899 899 SO4 SO4 . M 2 SO4 C 1 900 900 SO4 SO4 . N 3 GOL C 1 901 901 GOL GOL . O 4 2LI C 1 3 3 2LI LIG . P 5 HOH A 1 14 14 HOH HOH . P 5 HOH A 2 15 15 HOH HOH . P 5 HOH A 3 19 19 HOH HOH . P 5 HOH A 4 21 21 HOH HOH . P 5 HOH A 5 22 22 HOH HOH . P 5 HOH A 6 23 23 HOH HOH . P 5 HOH A 7 24 24 HOH HOH . P 5 HOH A 8 26 26 HOH HOH . P 5 HOH A 9 28 28 HOH HOH . P 5 HOH A 10 30 30 HOH HOH . P 5 HOH A 11 31 31 HOH HOH . P 5 HOH A 12 33 33 HOH HOH . P 5 HOH A 13 38 38 HOH HOH . P 5 HOH A 14 44 44 HOH HOH . P 5 HOH A 15 46 46 HOH HOH . P 5 HOH A 16 48 48 HOH HOH . P 5 HOH A 17 49 49 HOH HOH . P 5 HOH A 18 50 50 HOH HOH . P 5 HOH A 19 53 53 HOH HOH . P 5 HOH A 20 462 1 HOH HOH . P 5 HOH A 21 463 61 HOH HOH . P 5 HOH A 22 464 68 HOH HOH . P 5 HOH A 23 465 70 HOH HOH . P 5 HOH A 24 466 77 HOH HOH . P 5 HOH A 25 467 83 HOH HOH . P 5 HOH A 26 468 84 HOH HOH . P 5 HOH A 27 469 88 HOH HOH . P 5 HOH A 28 470 98 HOH HOH . P 5 HOH A 29 471 99 HOH HOH . P 5 HOH A 30 472 101 HOH HOH . P 5 HOH A 31 473 102 HOH HOH . P 5 HOH A 32 474 103 HOH HOH . P 5 HOH A 33 475 106 HOH HOH . P 5 HOH A 34 476 108 HOH HOH . P 5 HOH A 35 477 110 HOH HOH . P 5 HOH A 36 478 111 HOH HOH . P 5 HOH A 37 479 112 HOH HOH . P 5 HOH A 38 480 116 HOH HOH . P 5 HOH A 39 481 117 HOH HOH . P 5 HOH A 40 482 118 HOH HOH . P 5 HOH A 41 483 119 HOH HOH . P 5 HOH A 42 484 124 HOH HOH . P 5 HOH A 43 485 125 HOH HOH . P 5 HOH A 44 486 127 HOH HOH . P 5 HOH A 45 487 131 HOH HOH . P 5 HOH A 46 488 133 HOH HOH . P 5 HOH A 47 489 137 HOH HOH . P 5 HOH A 48 490 139 HOH HOH . P 5 HOH A 49 491 140 HOH HOH . P 5 HOH A 50 492 141 HOH HOH . P 5 HOH A 51 493 144 HOH HOH . P 5 HOH A 52 494 147 HOH HOH . P 5 HOH A 53 495 148 HOH HOH . P 5 HOH A 54 496 149 HOH HOH . P 5 HOH A 55 497 151 HOH HOH . P 5 HOH A 56 498 154 HOH HOH . P 5 HOH A 57 499 155 HOH HOH . P 5 HOH A 58 500 157 HOH HOH . P 5 HOH A 59 501 161 HOH HOH . P 5 HOH A 60 502 162 HOH HOH . P 5 HOH A 61 503 168 HOH HOH . P 5 HOH A 62 504 169 HOH HOH . P 5 HOH A 63 505 171 HOH HOH . P 5 HOH A 64 506 174 HOH HOH . P 5 HOH A 65 507 178 HOH HOH . P 5 HOH A 66 508 181 HOH HOH . P 5 HOH A 67 509 183 HOH HOH . P 5 HOH A 68 510 190 HOH HOH . P 5 HOH A 69 511 191 HOH HOH . P 5 HOH A 70 512 194 HOH HOH . P 5 HOH A 71 513 198 HOH HOH . P 5 HOH A 72 514 202 HOH HOH . P 5 HOH A 73 515 203 HOH HOH . P 5 HOH A 74 516 204 HOH HOH . P 5 HOH A 75 517 205 HOH HOH . P 5 HOH A 76 518 208 HOH HOH . P 5 HOH A 77 519 210 HOH HOH . P 5 HOH A 78 520 211 HOH HOH . P 5 HOH A 79 521 214 HOH HOH . P 5 HOH A 80 522 218 HOH HOH . P 5 HOH A 81 523 219 HOH HOH . P 5 HOH A 82 524 220 HOH HOH . P 5 HOH A 83 525 227 HOH HOH . P 5 HOH A 84 526 228 HOH HOH . P 5 HOH A 85 527 230 HOH HOH . P 5 HOH A 86 528 231 HOH HOH . P 5 HOH A 87 529 235 HOH HOH . P 5 HOH A 88 530 236 HOH HOH . P 5 HOH A 89 531 239 HOH HOH . P 5 HOH A 90 532 200 HOH HOH . P 5 HOH A 91 533 223 HOH HOH . Q 5 HOH B 1 3 3 HOH HOH . Q 5 HOH B 2 4 4 HOH HOH . Q 5 HOH B 3 10 10 HOH HOH . Q 5 HOH B 4 11 11 HOH HOH . Q 5 HOH B 5 12 12 HOH HOH . Q 5 HOH B 6 16 16 HOH HOH . Q 5 HOH B 7 17 17 HOH HOH . Q 5 HOH B 8 18 18 HOH HOH . Q 5 HOH B 9 20 20 HOH HOH . Q 5 HOH B 10 27 27 HOH HOH . Q 5 HOH B 11 29 29 HOH HOH . Q 5 HOH B 12 32 32 HOH HOH . Q 5 HOH B 13 37 37 HOH HOH . Q 5 HOH B 14 47 47 HOH HOH . Q 5 HOH B 15 54 54 HOH HOH . Q 5 HOH B 16 462 57 HOH HOH . Q 5 HOH B 17 463 59 HOH HOH . Q 5 HOH B 18 464 65 HOH HOH . Q 5 HOH B 19 465 66 HOH HOH . Q 5 HOH B 20 466 69 HOH HOH . Q 5 HOH B 21 467 71 HOH HOH . Q 5 HOH B 22 468 74 HOH HOH . Q 5 HOH B 23 469 75 HOH HOH . Q 5 HOH B 24 470 76 HOH HOH . Q 5 HOH B 25 471 78 HOH HOH . Q 5 HOH B 26 472 79 HOH HOH . Q 5 HOH B 27 473 80 HOH HOH . Q 5 HOH B 28 474 85 HOH HOH . Q 5 HOH B 29 475 86 HOH HOH . Q 5 HOH B 30 476 87 HOH HOH . Q 5 HOH B 31 477 91 HOH HOH . Q 5 HOH B 32 478 92 HOH HOH . Q 5 HOH B 33 479 93 HOH HOH . Q 5 HOH B 34 480 95 HOH HOH . Q 5 HOH B 35 481 100 HOH HOH . Q 5 HOH B 36 482 104 HOH HOH . Q 5 HOH B 37 483 113 HOH HOH . Q 5 HOH B 38 484 115 HOH HOH . Q 5 HOH B 39 485 120 HOH HOH . Q 5 HOH B 40 486 122 HOH HOH . Q 5 HOH B 41 487 123 HOH HOH . Q 5 HOH B 42 488 129 HOH HOH . Q 5 HOH B 43 489 130 HOH HOH . Q 5 HOH B 44 490 132 HOH HOH . Q 5 HOH B 45 491 135 HOH HOH . Q 5 HOH B 46 492 138 HOH HOH . Q 5 HOH B 47 493 143 HOH HOH . Q 5 HOH B 48 494 145 HOH HOH . Q 5 HOH B 49 495 146 HOH HOH . Q 5 HOH B 50 496 152 HOH HOH . Q 5 HOH B 51 497 153 HOH HOH . Q 5 HOH B 52 498 159 HOH HOH . Q 5 HOH B 53 499 160 HOH HOH . Q 5 HOH B 54 500 165 HOH HOH . Q 5 HOH B 55 501 166 HOH HOH . Q 5 HOH B 56 502 167 HOH HOH . Q 5 HOH B 57 503 170 HOH HOH . Q 5 HOH B 58 504 172 HOH HOH . Q 5 HOH B 59 505 173 HOH HOH . Q 5 HOH B 60 506 175 HOH HOH . Q 5 HOH B 61 507 177 HOH HOH . Q 5 HOH B 62 508 180 HOH HOH . Q 5 HOH B 63 509 182 HOH HOH . Q 5 HOH B 64 510 186 HOH HOH . Q 5 HOH B 65 511 187 HOH HOH . Q 5 HOH B 66 512 188 HOH HOH . Q 5 HOH B 67 513 192 HOH HOH . Q 5 HOH B 68 514 193 HOH HOH . Q 5 HOH B 69 515 195 HOH HOH . Q 5 HOH B 70 516 196 HOH HOH . Q 5 HOH B 71 517 199 HOH HOH . Q 5 HOH B 72 519 201 HOH HOH . Q 5 HOH B 73 520 207 HOH HOH . Q 5 HOH B 74 521 213 HOH HOH . Q 5 HOH B 75 522 215 HOH HOH . Q 5 HOH B 76 523 216 HOH HOH . Q 5 HOH B 77 524 217 HOH HOH . Q 5 HOH B 78 526 226 HOH HOH . Q 5 HOH B 79 527 232 HOH HOH . Q 5 HOH B 80 528 234 HOH HOH . Q 5 HOH B 81 529 237 HOH HOH . Q 5 HOH B 82 530 238 HOH HOH . R 5 HOH C 1 2 2 HOH HOH . R 5 HOH C 2 5 5 HOH HOH . R 5 HOH C 3 6 6 HOH HOH . R 5 HOH C 4 7 7 HOH HOH . R 5 HOH C 5 8 8 HOH HOH . R 5 HOH C 6 9 9 HOH HOH . R 5 HOH C 7 13 13 HOH HOH . R 5 HOH C 8 25 25 HOH HOH . R 5 HOH C 9 34 34 HOH HOH . R 5 HOH C 10 35 35 HOH HOH . R 5 HOH C 11 36 36 HOH HOH . R 5 HOH C 12 39 39 HOH HOH . R 5 HOH C 13 40 40 HOH HOH . R 5 HOH C 14 41 41 HOH HOH . R 5 HOH C 15 42 42 HOH HOH . R 5 HOH C 16 43 43 HOH HOH . R 5 HOH C 17 45 45 HOH HOH . R 5 HOH C 18 51 51 HOH HOH . R 5 HOH C 19 52 52 HOH HOH . R 5 HOH C 20 55 55 HOH HOH . R 5 HOH C 21 462 56 HOH HOH . R 5 HOH C 22 463 58 HOH HOH . R 5 HOH C 23 464 60 HOH HOH . R 5 HOH C 24 465 62 HOH HOH . R 5 HOH C 25 466 63 HOH HOH . R 5 HOH C 26 467 64 HOH HOH . R 5 HOH C 27 468 67 HOH HOH . R 5 HOH C 28 469 72 HOH HOH . R 5 HOH C 29 470 73 HOH HOH . R 5 HOH C 30 471 81 HOH HOH . R 5 HOH C 31 472 82 HOH HOH . R 5 HOH C 32 473 89 HOH HOH . R 5 HOH C 33 474 90 HOH HOH . R 5 HOH C 34 475 94 HOH HOH . R 5 HOH C 35 476 96 HOH HOH . R 5 HOH C 36 477 97 HOH HOH . R 5 HOH C 37 478 105 HOH HOH . R 5 HOH C 38 479 107 HOH HOH . R 5 HOH C 39 480 109 HOH HOH . R 5 HOH C 40 481 114 HOH HOH . R 5 HOH C 41 482 121 HOH HOH . R 5 HOH C 42 483 126 HOH HOH . R 5 HOH C 43 484 128 HOH HOH . R 5 HOH C 44 485 134 HOH HOH . R 5 HOH C 45 486 142 HOH HOH . R 5 HOH C 46 487 150 HOH HOH . R 5 HOH C 47 488 156 HOH HOH . R 5 HOH C 48 489 158 HOH HOH . R 5 HOH C 49 490 163 HOH HOH . R 5 HOH C 50 491 176 HOH HOH . R 5 HOH C 51 492 179 HOH HOH . R 5 HOH C 52 493 184 HOH HOH . R 5 HOH C 53 494 185 HOH HOH . R 5 HOH C 54 495 189 HOH HOH . R 5 HOH C 55 496 197 HOH HOH . R 5 HOH C 56 497 206 HOH HOH . R 5 HOH C 57 498 209 HOH HOH . R 5 HOH C 58 499 212 HOH HOH . R 5 HOH C 59 500 221 HOH HOH . R 5 HOH C 60 501 224 HOH HOH . R 5 HOH C 61 502 229 HOH HOH . R 5 HOH C 62 503 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 3 27.124 -3.685 76.713 1 81.99 ? C1 GOL 901 B 1 HETATM 2 O O1 GOL . . . J 3 26.126 -4.572 77.183 1 80.29 ? O1 GOL 901 B 1 HETATM 3 C C2 GOL . . . J 3 28.174 -3.367 77.778 1 82.01 ? C2 GOL 901 B 1 HETATM 4 O O2 GOL . . . J 3 28.613 -2.035 77.649 1 81.98 ? O2 GOL 901 B 1 HETATM 5 C C3 GOL . . . J 3 29.385 -4.27 77.622 1 82.9 ? C3 GOL 901 B 1 HETATM 6 O O3 GOL . . . J 3 30.332 -3.989 78.635 1 83.48 ? O3 GOL 901 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #