data_3IVP # _model_server_result.job_id WQtTiGV_1TOGrbgnnxL9mw _model_server_result.datetime_utc '2024-12-22 06:22:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ivp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":127}' # _entry.id 3IVP # _exptl.entry_id 3IVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IVP _cell.length_a 49.326 _cell.length_b 69.829 _cell.length_c 170.359 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,H,I 1 1 C,D,E,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 33 A ALA 33 1_555 A N MSE 34 A MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C MSE 34 A MSE 34 1_555 A N ILE 35 A ILE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 A C ILE 101 A ILE 101 1_555 A N MSE 102 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 102 A MSE 102 1_555 A N GLU 103 A GLU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 B C ALA 33 B ALA 33 1_555 B N MSE 34 B MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C MSE 34 B MSE 34 1_555 B N ILE 35 B ILE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale7 B C ILE 101 B ILE 101 1_555 B N MSE 102 B MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 B C MSE 102 B MSE 102 1_555 B N GLU 103 B GLU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 C C ALA 33 C ALA 33 1_555 C N MSE 34 C MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale10 C C MSE 34 C MSE 34 1_555 C N ILE 35 C ILE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 C C ILE 101 C ILE 101 1_555 C N MSE 102 C MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 C C MSE 102 C MSE 102 1_555 C N GLU 103 C GLU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 D C MSE 1 D MSE 1 1_555 D N ARG 2 D ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale14 D C ALA 33 D ALA 33 1_555 D N MSE 34 D MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 D C MSE 34 D MSE 34 1_555 D N ILE 35 D ILE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 D C ILE 101 D ILE 101 1_555 D N MSE 102 D MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale17 D C MSE 102 D MSE 102 1_555 D N GLU 103 D GLU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 224 n n O1 HO1 PG4 sing 225 n n C1 C2 PG4 sing 226 n n C1 H11 PG4 sing 227 n n C1 H12 PG4 sing 228 n n C2 O2 PG4 sing 229 n n C2 H21 PG4 sing 230 n n C2 H22 PG4 sing 231 n n O2 C3 PG4 sing 232 n n C3 C4 PG4 sing 233 n n C3 H31 PG4 sing 234 n n C3 H32 PG4 sing 235 n n C4 O3 PG4 sing 236 n n C4 H41 PG4 sing 237 n n C4 H42 PG4 sing 238 n n O3 C5 PG4 sing 239 n n C5 C6 PG4 sing 240 n n C5 H51 PG4 sing 241 n n C5 H52 PG4 sing 242 n n C6 O4 PG4 sing 243 n n C6 H61 PG4 sing 244 n n C6 H62 PG4 sing 245 n n O4 C7 PG4 sing 246 n n C7 C8 PG4 sing 247 n n C7 H71 PG4 sing 248 n n C7 H72 PG4 sing 249 n n C8 O5 PG4 sing 250 n n C8 H81 PG4 sing 251 n n C8 H82 PG4 sing 252 n n O5 HO5 PG4 sing 253 n n # _atom_sites.entry_id 3IVP _atom_sites.fract_transf_matrix[1][1] 0.020273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PG4 C 1 127 1 PG4 PG4 . F 2 PG4 C 1 128 3 PG4 PG4 . G 2 PG4 D 1 127 2 PG4 PG4 . H 3 HOH A 1 127 127 HOH HOH . H 3 HOH A 2 128 128 HOH HOH . H 3 HOH A 3 129 4 HOH HOH . H 3 HOH A 4 130 5 HOH HOH . H 3 HOH A 5 131 12 HOH HOH . H 3 HOH A 6 132 15 HOH HOH . H 3 HOH A 7 133 133 HOH HOH . H 3 HOH A 8 134 134 HOH HOH . H 3 HOH A 9 135 16 HOH HOH . H 3 HOH A 10 136 136 HOH HOH . H 3 HOH A 11 137 17 HOH HOH . H 3 HOH A 12 138 18 HOH HOH . H 3 HOH A 13 139 22 HOH HOH . H 3 HOH A 14 140 27 HOH HOH . H 3 HOH A 15 141 30 HOH HOH . H 3 HOH A 16 142 33 HOH HOH . H 3 HOH A 17 143 34 HOH HOH . H 3 HOH A 18 144 37 HOH HOH . H 3 HOH A 19 145 40 HOH HOH . H 3 HOH A 20 146 41 HOH HOH . H 3 HOH A 21 147 43 HOH HOH . H 3 HOH A 22 148 44 HOH HOH . H 3 HOH A 23 149 45 HOH HOH . H 3 HOH A 24 150 54 HOH HOH . H 3 HOH A 25 151 59 HOH HOH . H 3 HOH A 26 152 60 HOH HOH . H 3 HOH A 27 153 63 HOH HOH . H 3 HOH A 28 154 74 HOH HOH . H 3 HOH A 29 155 79 HOH HOH . H 3 HOH A 30 156 80 HOH HOH . H 3 HOH A 31 157 81 HOH HOH . H 3 HOH A 32 158 83 HOH HOH . H 3 HOH A 33 159 89 HOH HOH . H 3 HOH A 34 160 91 HOH HOH . H 3 HOH A 35 162 93 HOH HOH . H 3 HOH A 36 163 96 HOH HOH . H 3 HOH A 37 164 100 HOH HOH . H 3 HOH A 38 165 102 HOH HOH . H 3 HOH A 39 166 105 HOH HOH . H 3 HOH A 40 167 106 HOH HOH . H 3 HOH A 41 168 109 HOH HOH . H 3 HOH A 42 169 111 HOH HOH . H 3 HOH A 43 170 114 HOH HOH . H 3 HOH A 44 171 116 HOH HOH . H 3 HOH A 45 172 117 HOH HOH . H 3 HOH A 46 173 118 HOH HOH . H 3 HOH A 47 174 119 HOH HOH . H 3 HOH A 48 175 121 HOH HOH . H 3 HOH A 49 176 123 HOH HOH . I 3 HOH B 1 127 1 HOH HOH . I 3 HOH B 2 128 3 HOH HOH . I 3 HOH B 3 129 129 HOH HOH . I 3 HOH B 4 130 130 HOH HOH . I 3 HOH B 5 131 6 HOH HOH . I 3 HOH B 6 132 7 HOH HOH . I 3 HOH B 7 133 8 HOH HOH . I 3 HOH B 8 134 9 HOH HOH . I 3 HOH B 9 135 10 HOH HOH . I 3 HOH B 10 136 13 HOH HOH . I 3 HOH B 11 137 14 HOH HOH . I 3 HOH B 12 138 25 HOH HOH . I 3 HOH B 13 139 29 HOH HOH . I 3 HOH B 14 140 31 HOH HOH . I 3 HOH B 15 141 32 HOH HOH . I 3 HOH B 16 142 39 HOH HOH . I 3 HOH B 17 143 42 HOH HOH . I 3 HOH B 18 144 46 HOH HOH . I 3 HOH B 19 145 48 HOH HOH . I 3 HOH B 20 146 50 HOH HOH . I 3 HOH B 21 147 51 HOH HOH . I 3 HOH B 22 148 55 HOH HOH . I 3 HOH B 23 149 58 HOH HOH . I 3 HOH B 24 150 64 HOH HOH . I 3 HOH B 25 151 69 HOH HOH . I 3 HOH B 26 152 70 HOH HOH . I 3 HOH B 27 153 72 HOH HOH . I 3 HOH B 28 154 73 HOH HOH . I 3 HOH B 29 155 76 HOH HOH . I 3 HOH B 30 156 84 HOH HOH . I 3 HOH B 31 157 87 HOH HOH . I 3 HOH B 32 158 88 HOH HOH . I 3 HOH B 33 159 94 HOH HOH . I 3 HOH B 34 160 95 HOH HOH . I 3 HOH B 35 161 92 HOH HOH . I 3 HOH B 36 162 101 HOH HOH . I 3 HOH B 37 163 108 HOH HOH . I 3 HOH B 38 164 110 HOH HOH . I 3 HOH B 39 165 112 HOH HOH . I 3 HOH B 40 166 115 HOH HOH . I 3 HOH B 41 167 120 HOH HOH . I 3 HOH B 42 168 122 HOH HOH . I 3 HOH B 43 169 124 HOH HOH . I 3 HOH B 44 170 126 HOH HOH . I 3 HOH B 45 171 99 HOH HOH . J 3 HOH C 1 129 2 HOH HOH . J 3 HOH C 2 130 11 HOH HOH . J 3 HOH C 3 131 131 HOH HOH . J 3 HOH C 4 132 132 HOH HOH . J 3 HOH C 5 133 19 HOH HOH . J 3 HOH C 6 134 20 HOH HOH . J 3 HOH C 7 135 135 HOH HOH . J 3 HOH C 8 136 21 HOH HOH . J 3 HOH C 9 137 23 HOH HOH . J 3 HOH C 10 138 24 HOH HOH . J 3 HOH C 11 139 26 HOH HOH . J 3 HOH C 12 140 28 HOH HOH . J 3 HOH C 13 141 38 HOH HOH . J 3 HOH C 14 142 49 HOH HOH . J 3 HOH C 15 143 52 HOH HOH . J 3 HOH C 16 144 53 HOH HOH . J 3 HOH C 17 145 56 HOH HOH . J 3 HOH C 18 146 61 HOH HOH . J 3 HOH C 19 147 65 HOH HOH . J 3 HOH C 20 148 66 HOH HOH . J 3 HOH C 21 149 67 HOH HOH . J 3 HOH C 22 150 68 HOH HOH . J 3 HOH C 23 151 71 HOH HOH . J 3 HOH C 24 152 75 HOH HOH . J 3 HOH C 25 153 77 HOH HOH . J 3 HOH C 26 154 78 HOH HOH . J 3 HOH C 27 155 82 HOH HOH . J 3 HOH C 28 156 86 HOH HOH . J 3 HOH C 29 157 90 HOH HOH . J 3 HOH C 30 158 97 HOH HOH . J 3 HOH C 31 159 98 HOH HOH . J 3 HOH C 32 160 103 HOH HOH . J 3 HOH C 33 161 113 HOH HOH . J 3 HOH C 34 162 125 HOH HOH . K 3 HOH D 1 128 35 HOH HOH . K 3 HOH D 2 129 36 HOH HOH . K 3 HOH D 3 130 47 HOH HOH . K 3 HOH D 4 131 57 HOH HOH . K 3 HOH D 5 132 62 HOH HOH . K 3 HOH D 6 133 85 HOH HOH . K 3 HOH D 7 134 104 HOH HOH . K 3 HOH D 8 135 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . E 2 80.122 96.472 2.041 1 60.47 ? O1 PG4 127 C 1 HETATM 2 C C1 PG4 . . . E 2 80.604 96.675 0.708 1 57.83 ? C1 PG4 127 C 1 HETATM 3 C C2 PG4 . . . E 2 80.442 95.38 -0.074 1 56.91 ? C2 PG4 127 C 1 HETATM 4 O O2 PG4 . . . E 2 79.067 95.253 -0.47 1 54.89 ? O2 PG4 127 C 1 HETATM 5 C C3 PG4 . . . E 2 78.73 96.107 -1.533 1 50.58 ? C3 PG4 127 C 1 HETATM 6 C C4 PG4 . . . E 2 77.39 95.693 -2.04 1 46.72 ? C4 PG4 127 C 1 HETATM 7 O O3 PG4 . . . E 2 76.411 95.743 -1.009 1 46.96 ? O3 PG4 127 C 1 HETATM 8 C C5 PG4 . . . E 2 75.176 96.052 -1.648 1 46.12 ? C5 PG4 127 C 1 HETATM 9 C C6 PG4 . . . E 2 74.179 96.497 -0.615 1 47.66 ? C6 PG4 127 C 1 HETATM 10 O O4 PG4 . . . E 2 74.27 95.608 0.461 1 51.04 ? O4 PG4 127 C 1 HETATM 11 C C7 PG4 . . . E 2 73.018 95.215 1.016 1 52 ? C7 PG4 127 C 1 HETATM 12 C C8 PG4 . . . E 2 73.363 94.514 2.318 1 53.95 ? C8 PG4 127 C 1 HETATM 13 O O5 PG4 . . . E 2 72.391 93.481 2.518 1 57.17 ? O5 PG4 127 C 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 13 #