data_3IVZ # _model_server_result.job_id oNhLgrs8bkLWDHBbs6lkPQ _model_server_result.datetime_utc '2025-01-23 14:24:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ivz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":263}' # _entry.id 3IVZ # _exptl.entry_id 3IVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IVZ _cell.length_a 59.174 _cell.length_b 59.174 _cell.length_c 127.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 145 A ILE 145 1_555 A N CSX 146 A CSX 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C CSX 146 A CSX 146 1_555 A N PHE 147 A PHE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 B C ILE 145 B ILE 145 1_555 B N CSX 146 B CSX 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 B C CSX 146 B CSX 146 1_555 B N PHE 147 B PHE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? metalc ? metalc1 A O MET 222 A MET 222 1_555 C MG MG . A MG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc2 C MG MG . A MG 263 1_555 D O HOH . A HOH 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 C MG MG . A MG 263 1_555 D O HOH . A HOH 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 C MG MG . A MG 263 1_555 D O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 C MG MG . A MG 263 1_555 D O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc6 C MG MG . A MG 263 1_555 D O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IVZ _atom_sites.fract_transf_matrix[1][1] 0.016899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 263 1 MG MG . D 3 HOH A 1 264 4 HOH HOH . D 3 HOH A 2 265 6 HOH HOH . D 3 HOH A 3 266 8 HOH HOH . D 3 HOH A 4 267 9 HOH HOH . D 3 HOH A 5 268 10 HOH HOH . D 3 HOH A 6 269 13 HOH HOH . D 3 HOH A 7 270 14 HOH HOH . D 3 HOH A 8 271 15 HOH HOH . D 3 HOH A 9 272 16 HOH HOH . D 3 HOH A 10 273 17 HOH HOH . D 3 HOH A 11 274 18 HOH HOH . D 3 HOH A 12 275 20 HOH HOH . D 3 HOH A 13 276 25 HOH HOH . D 3 HOH A 14 277 26 HOH HOH . D 3 HOH A 15 278 27 HOH HOH . D 3 HOH A 16 279 28 HOH HOH . D 3 HOH A 17 280 34 HOH HOH . D 3 HOH A 18 281 38 HOH HOH . D 3 HOH A 19 282 42 HOH HOH . D 3 HOH A 20 283 46 HOH HOH . D 3 HOH A 21 284 47 HOH HOH . D 3 HOH A 22 285 48 HOH HOH . D 3 HOH A 23 286 51 HOH HOH . D 3 HOH A 24 287 53 HOH HOH . D 3 HOH A 25 288 54 HOH HOH . D 3 HOH A 26 289 55 HOH HOH . D 3 HOH A 27 290 56 HOH HOH . D 3 HOH A 28 291 57 HOH HOH . D 3 HOH A 29 292 59 HOH HOH . D 3 HOH A 30 293 63 HOH HOH . D 3 HOH A 31 294 64 HOH HOH . D 3 HOH A 32 295 70 HOH HOH . D 3 HOH A 33 296 71 HOH HOH . D 3 HOH A 34 297 75 HOH HOH . D 3 HOH A 35 298 77 HOH HOH . D 3 HOH A 36 299 79 HOH HOH . D 3 HOH A 37 300 81 HOH HOH . D 3 HOH A 38 301 83 HOH HOH . D 3 HOH A 39 302 84 HOH HOH . D 3 HOH A 40 303 85 HOH HOH . D 3 HOH A 41 304 91 HOH HOH . D 3 HOH A 42 305 93 HOH HOH . D 3 HOH A 43 306 94 HOH HOH . D 3 HOH A 44 307 95 HOH HOH . D 3 HOH A 45 308 99 HOH HOH . D 3 HOH A 46 309 102 HOH HOH . D 3 HOH A 47 310 105 HOH HOH . D 3 HOH A 48 311 106 HOH HOH . D 3 HOH A 49 312 112 HOH HOH . D 3 HOH A 50 313 114 HOH HOH . D 3 HOH A 51 314 121 HOH HOH . D 3 HOH A 52 315 123 HOH HOH . D 3 HOH A 53 316 125 HOH HOH . D 3 HOH A 54 317 128 HOH HOH . D 3 HOH A 55 318 135 HOH HOH . D 3 HOH A 56 319 137 HOH HOH . D 3 HOH A 57 320 139 HOH HOH . D 3 HOH A 58 321 145 HOH HOH . D 3 HOH A 59 322 149 HOH HOH . D 3 HOH A 60 323 150 HOH HOH . D 3 HOH A 61 324 160 HOH HOH . D 3 HOH A 62 325 166 HOH HOH . D 3 HOH A 63 326 168 HOH HOH . D 3 HOH A 64 327 172 HOH HOH . E 3 HOH B 1 263 1 HOH HOH . E 3 HOH B 2 264 2 HOH HOH . E 3 HOH B 3 265 3 HOH HOH . E 3 HOH B 4 266 5 HOH HOH . E 3 HOH B 5 267 7 HOH HOH . E 3 HOH B 6 268 11 HOH HOH . E 3 HOH B 7 269 12 HOH HOH . E 3 HOH B 8 270 19 HOH HOH . E 3 HOH B 9 271 21 HOH HOH . E 3 HOH B 10 272 22 HOH HOH . E 3 HOH B 11 273 23 HOH HOH . E 3 HOH B 12 274 24 HOH HOH . E 3 HOH B 13 275 29 HOH HOH . E 3 HOH B 14 276 30 HOH HOH . E 3 HOH B 15 277 31 HOH HOH . E 3 HOH B 16 278 33 HOH HOH . E 3 HOH B 17 279 35 HOH HOH . E 3 HOH B 18 280 36 HOH HOH . E 3 HOH B 19 281 40 HOH HOH . E 3 HOH B 20 282 41 HOH HOH . E 3 HOH B 21 283 43 HOH HOH . E 3 HOH B 22 284 44 HOH HOH . E 3 HOH B 23 285 45 HOH HOH . E 3 HOH B 24 286 52 HOH HOH . E 3 HOH B 25 287 58 HOH HOH . E 3 HOH B 26 288 60 HOH HOH . E 3 HOH B 27 289 61 HOH HOH . E 3 HOH B 28 290 62 HOH HOH . E 3 HOH B 29 291 65 HOH HOH . E 3 HOH B 30 292 66 HOH HOH . E 3 HOH B 31 293 67 HOH HOH . E 3 HOH B 32 294 73 HOH HOH . E 3 HOH B 33 295 86 HOH HOH . E 3 HOH B 34 296 88 HOH HOH . E 3 HOH B 35 297 92 HOH HOH . E 3 HOH B 36 298 96 HOH HOH . E 3 HOH B 37 299 97 HOH HOH . E 3 HOH B 38 300 100 HOH HOH . E 3 HOH B 39 301 103 HOH HOH . E 3 HOH B 40 302 104 HOH HOH . E 3 HOH B 41 303 115 HOH HOH . E 3 HOH B 42 304 117 HOH HOH . E 3 HOH B 43 305 118 HOH HOH . E 3 HOH B 44 306 124 HOH HOH . E 3 HOH B 45 307 126 HOH HOH . E 3 HOH B 46 308 127 HOH HOH . E 3 HOH B 47 309 136 HOH HOH . E 3 HOH B 48 310 141 HOH HOH . E 3 HOH B 49 311 144 HOH HOH . E 3 HOH B 50 312 148 HOH HOH . E 3 HOH B 51 313 153 HOH HOH . E 3 HOH B 52 314 154 HOH HOH . E 3 HOH B 53 315 155 HOH HOH . E 3 HOH B 54 316 157 HOH HOH . E 3 HOH B 55 317 158 HOH HOH . E 3 HOH B 56 318 159 HOH HOH . E 3 HOH B 57 319 161 HOH HOH . E 3 HOH B 58 320 164 HOH HOH . E 3 HOH B 59 321 165 HOH HOH . E 3 HOH B 60 322 170 HOH HOH . E 3 HOH B 61 323 173 HOH HOH . E 3 HOH B 62 324 175 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.827 _atom_site.Cartn_y 22.56 _atom_site.Cartn_z 27.999 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 22.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 263 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #