data_3IW4 # _model_server_result.job_id ucZIBs0qls7dFwMjfj7PJQ _model_server_result.datetime_utc '2024-11-22 22:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 3IW4 # _exptl.entry_id 3IW4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(1H-indol-3-yl)-4-[2-(4-methylpiperazin-1-yl)quinazolin-4-yl]-1H-pyrrole-2,5-dione _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IW4 _cell.length_a 43.868 _cell.length_b 100.669 _cell.length_c 251.335 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 319 A LEU 637 1_555 A N TPO 320 A TPO 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C TPO 320 A TPO 638 1_555 A N PRO 321 A PRO 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C PHE 338 A PHE 656 1_555 A N SEP 339 A SEP 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C SEP 339 A SEP 657 1_555 A N TYR 340 A TYR 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 B C LEU 319 B LEU 637 1_555 B N TPO 320 B TPO 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 B C TPO 320 B TPO 638 1_555 B N PRO 321 B PRO 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 B C PHE 338 B PHE 656 1_555 B N SEP 339 B SEP 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale8 B C SEP 339 B SEP 657 1_555 B N TYR 340 B TYR 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale9 C C LEU 319 C LEU 637 1_555 C N TPO 320 C TPO 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 C C TPO 320 C TPO 638 1_555 C N PRO 321 C PRO 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale11 C C PHE 338 C PHE 656 1_555 C N SEP 339 C SEP 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 C C SEP 339 C SEP 657 1_555 C N TYR 340 C TYR 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C25 H22 N6 O2' _chem_comp.formula_weight 438.481 _chem_comp.id LW4 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(1H-indol-3-yl)-4-[2-(4-methylpiperazin-1-yl)quinazolin-4-yl]-1H-pyrrole-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 LW4 sing 194 n y N1 C3 LW4 sing 195 n y C4 C5 LW4 sing 196 n y C4 C3 LW4 doub 197 n y C4 C48 LW4 sing 198 n y C5 C6 LW4 doub 199 n y C5 C8 LW4 sing 200 n n C8 C13 LW4 sing 201 n n C8 C9 LW4 doub 202 n n C10 C9 LW4 sing 203 n n C10 N11 LW4 sing 204 n n C10 O15 LW4 doub 205 n n C13 N11 LW4 sing 206 n n C13 O14 LW4 doub 207 n n C20 C21 LW4 doub 208 n y C20 C28 LW4 sing 209 n y C20 N19 LW4 sing 210 n y C21 C22 LW4 sing 211 n y C21 C16 LW4 sing 212 n y C22 C24 LW4 doub 213 n y C24 C26 LW4 sing 214 n y C26 C28 LW4 doub 215 n y C3 C54 LW4 sing 216 n y C9 C16 LW4 sing 217 n n C16 N17 LW4 doub 218 n y N17 C18 LW4 sing 219 n y C18 N19 LW4 doub 220 n y C18 N30 LW4 sing 221 n n N30 C31 LW4 sing 222 n n N30 C41 LW4 sing 223 n n C31 C34 LW4 sing 224 n n C34 N37 LW4 sing 225 n n N37 C38 LW4 sing 226 n n N37 C44 LW4 sing 227 n n C38 C41 LW4 sing 228 n n C48 C50 LW4 doub 229 n y C50 C52 LW4 sing 230 n y C52 C54 LW4 doub 231 n y N1 HN1 LW4 sing 232 n n C6 H6 LW4 sing 233 n n C22 H22 LW4 sing 234 n n C24 H24 LW4 sing 235 n n C26 H26 LW4 sing 236 n n C28 H28 LW4 sing 237 n n N11 HN11 LW4 sing 238 n n C31 H31 LW4 sing 239 n n C31 H31A LW4 sing 240 n n C34 H34 LW4 sing 241 n n C34 H34A LW4 sing 242 n n C38 H38 LW4 sing 243 n n C38 H38A LW4 sing 244 n n C41 H41 LW4 sing 245 n n C41 H41A LW4 sing 246 n n C44 H44 LW4 sing 247 n n C44 H44A LW4 sing 248 n n C44 H44B LW4 sing 249 n n C48 H48 LW4 sing 250 n n C50 H50 LW4 sing 251 n n C52 H52 LW4 sing 252 n n C54 H54 LW4 sing 253 n n # _atom_sites.entry_id 3IW4 _atom_sites.fract_transf_matrix[1][1] 0.022796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 LW4 A 1 901 901 LW4 LIG . E 2 LW4 B 1 901 901 LW4 LIG . F 2 LW4 C 1 901 901 LW4 LIG . G 3 HOH A 1 3 3 HOH HOH . G 3 HOH A 2 4 4 HOH HOH . G 3 HOH A 3 12 12 HOH HOH . G 3 HOH A 4 20 20 HOH HOH . G 3 HOH A 5 21 21 HOH HOH . G 3 HOH A 6 22 22 HOH HOH . G 3 HOH A 7 23 23 HOH HOH . G 3 HOH A 8 24 24 HOH HOH . G 3 HOH A 9 26 26 HOH HOH . G 3 HOH A 10 32 32 HOH HOH . G 3 HOH A 11 33 33 HOH HOH . G 3 HOH A 12 34 34 HOH HOH . G 3 HOH A 13 35 35 HOH HOH . G 3 HOH A 14 38 38 HOH HOH . G 3 HOH A 15 41 41 HOH HOH . G 3 HOH A 16 42 42 HOH HOH . G 3 HOH A 17 45 45 HOH HOH . G 3 HOH A 18 46 46 HOH HOH . G 3 HOH A 19 52 52 HOH HOH . H 3 HOH B 1 1 1 HOH HOH . H 3 HOH B 2 2 2 HOH HOH . H 3 HOH B 3 7 7 HOH HOH . H 3 HOH B 4 16 16 HOH HOH . H 3 HOH B 5 18 18 HOH HOH . H 3 HOH B 6 19 19 HOH HOH . H 3 HOH B 7 40 40 HOH HOH . I 3 HOH C 1 5 5 HOH HOH . I 3 HOH C 2 6 6 HOH HOH . I 3 HOH C 3 8 8 HOH HOH . I 3 HOH C 4 9 9 HOH HOH . I 3 HOH C 5 11 11 HOH HOH . I 3 HOH C 6 14 14 HOH HOH . I 3 HOH C 7 15 15 HOH HOH . I 3 HOH C 8 17 17 HOH HOH . I 3 HOH C 9 25 25 HOH HOH . I 3 HOH C 10 27 27 HOH HOH . I 3 HOH C 11 28 28 HOH HOH . I 3 HOH C 12 29 29 HOH HOH . I 3 HOH C 13 31 31 HOH HOH . I 3 HOH C 14 37 37 HOH HOH . I 3 HOH C 15 39 39 HOH HOH . I 3 HOH C 16 43 43 HOH HOH . I 3 HOH C 17 44 44 HOH HOH . I 3 HOH C 18 50 50 HOH HOH . I 3 HOH C 19 51 51 HOH HOH . I 3 HOH C 20 53 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LW4 . . . E 2 -12.98 13.435 29.705 1 30.2 ? N1 LW4 901 B 1 HETATM 2 C C4 LW4 . . . E 2 -14.808 14.294 30.653 1 31.99 ? C4 LW4 901 B 1 HETATM 3 C C5 LW4 . . . E 2 -15.123 13.199 29.675 1 26.37 ? C5 LW4 901 B 1 HETATM 4 C C6 LW4 . . . E 2 -13.971 12.772 29.154 1 29.2 ? C6 LW4 901 B 1 HETATM 5 C C8 LW4 . . . E 2 -16.426 12.715 29.293 1 26.51 ? C8 LW4 901 B 1 HETATM 6 C C10 LW4 . . . E 2 -18.574 12.369 28.73 1 30.76 ? C10 LW4 901 B 1 HETATM 7 C C13 LW4 . . . E 2 -16.639 11.358 28.823 1 28.37 ? C13 LW4 901 B 1 HETATM 8 C C20 LW4 . . . E 2 -19.316 16.466 30.604 1 31.04 ? C20 LW4 901 B 1 HETATM 9 C C21 LW4 . . . E 2 -19.096 15.104 30.336 1 31.68 ? C21 LW4 901 B 1 HETATM 10 C C22 LW4 . . . E 2 -19.989 14.13 30.824 1 32.62 ? C22 LW4 901 B 1 HETATM 11 C C24 LW4 . . . E 2 -21.106 14.497 31.562 1 33.6 ? C24 LW4 901 B 1 HETATM 12 C C26 LW4 . . . E 2 -21.313 15.862 31.819 1 39.17 ? C26 LW4 901 B 1 HETATM 13 C C28 LW4 . . . E 2 -20.428 16.852 31.348 1 31.93 ? C28 LW4 901 B 1 HETATM 14 C C3 LW4 . . . E 2 -13.415 14.341 30.592 1 30.91 ? C3 LW4 901 B 1 HETATM 15 C C9 LW4 . . . E 2 -17.607 13.349 29.223 1 30.97 ? C9 LW4 901 B 1 HETATM 16 N N11 LW4 . . . E 2 -17.942 11.191 28.519 1 33.23 ? N11 LW4 901 B 1 HETATM 17 O O14 LW4 . . . E 2 -15.745 10.533 28.763 1 30.4 ? O14 LW4 901 B 1 HETATM 18 O O15 LW4 . . . E 2 -19.754 12.622 28.55 1 33.26 ? O15 LW4 901 B 1 HETATM 19 C C16 LW4 . . . E 2 -17.966 14.777 29.582 1 29.88 ? C16 LW4 901 B 1 HETATM 20 N N17 LW4 . . . E 2 -17.161 15.765 29.159 1 33.18 ? N17 LW4 901 B 1 HETATM 21 C C18 LW4 . . . E 2 -17.375 17.071 29.432 1 31.95 ? C18 LW4 901 B 1 HETATM 22 N N19 LW4 . . . E 2 -18.455 17.416 30.167 1 31.84 ? N19 LW4 901 B 1 HETATM 23 N N30 LW4 . . . E 2 -16.404 17.964 29.132 1 27.03 ? N30 LW4 901 B 1 HETATM 24 C C31 LW4 . . . E 2 -16.483 19.325 29.641 1 29.31 ? C31 LW4 901 B 1 HETATM 25 C C34 LW4 . . . E 2 -15.142 19.743 30.297 1 30.07 ? C34 LW4 901 B 1 HETATM 26 N N37 LW4 . . . E 2 -14.018 19.289 29.45 1 31.98 ? N37 LW4 901 B 1 HETATM 27 C C38 LW4 . . . E 2 -14.015 17.826 29.231 1 25.97 ? C38 LW4 901 B 1 HETATM 28 C C41 LW4 . . . E 2 -15.241 17.54 28.353 1 23.91 ? C41 LW4 901 B 1 HETATM 29 C C44 LW4 . . . E 2 -12.703 19.942 29.708 1 33.29 ? C44 LW4 901 B 1 HETATM 30 C C48 LW4 . . . E 2 -15.543 15.119 31.506 1 29.01 ? C48 LW4 901 B 1 HETATM 31 C C50 LW4 . . . E 2 -14.782 16.007 32.292 1 33.54 ? C50 LW4 901 B 1 HETATM 32 C C52 LW4 . . . E 2 -13.376 16.06 32.226 1 31.18 ? C52 LW4 901 B 1 HETATM 33 C C54 LW4 . . . E 2 -12.658 15.215 31.368 1 30.45 ? C54 LW4 901 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #