data_3IW5 # _model_server_result.job_id fLlKktkPPPpba5fjeGAcYQ _model_server_result.datetime_utc '2024-10-11 01:29:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iw5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":362}' # _entry.id 3IW5 # _exptl.entry_id 3IW5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 555.568 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(3-{[2-(2,3-dihydro-1,4-benzodioxin-6-ylamino)-2-oxoethyl]sulfanyl}-1H-indol-1-yl)ethyl]-3-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IW5 _cell.length_a 69.07 _cell.length_b 70.05 _cell.length_c 74.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H24 F3 N3 O4 S' _chem_comp.formula_weight 555.568 _chem_comp.id DF3 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(3-{[2-(2,3-dihydro-1,4-benzodioxin-6-ylamino)-2-oxoethyl]sulfanyl}-1H-indol-1-yl)ethyl]-3-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CBB DF3 doub 131 n n OAB CBC DF3 doub 132 n n CBM FAC DF3 sing 133 n n CBM FAD DF3 sing 134 n n FAE CBM DF3 sing 135 n n CAF CAI DF3 doub 136 n y CAF CAJ DF3 sing 137 n y CAF HAF DF3 sing 138 n n CAM CAG DF3 doub 139 n y CAG CAH DF3 sing 140 n y CAG HAG DF3 sing 141 n n CAH CAN DF3 doub 142 n y CAH HAH DF3 sing 143 n n CAI CBE DF3 sing 144 n y CAI HAI DF3 sing 145 n n CAJ CBF DF3 doub 146 n y CAJ HAJ DF3 sing 147 n n CAL CAK DF3 doub 148 n y CAK CBD DF3 sing 149 n y CAK HAK DF3 sing 150 n n CAL CBG DF3 sing 151 n y CAL HAL DF3 sing 152 n n CAM CBJ DF3 sing 153 n y CAM HAM DF3 sing 154 n n CBK CAN DF3 sing 155 n y CAN HAN DF3 sing 156 n n CBD CAO DF3 doub 157 n y CBH CAO DF3 sing 158 n y CAO HAO DF3 sing 159 n n CBE CAP DF3 doub 160 n y CBF CAP DF3 sing 161 n y CAP HAP DF3 sing 162 n n CBI CAQ DF3 doub 163 n y CAQ NBL DF3 sing 164 n y CAQ HAQ DF3 sing 165 n n NAW CAR DF3 sing 166 n n CAU CAR DF3 sing 167 n n CAR HAR DF3 sing 168 n n CAR HARA DF3 sing 169 n n OAY CAS DF3 sing 170 n n CAS CAT DF3 sing 171 n n CAS HAS DF3 sing 172 n n CAS HASA DF3 sing 173 n n CAT OAZ DF3 sing 174 n n CAT HAT DF3 sing 175 n n CAT HATA DF3 sing 176 n n NBL CAU DF3 sing 177 n n CAU HAU DF3 sing 178 n n CAU HAUA DF3 sing 179 n n CBB CAV DF3 sing 180 n n CAV SBA DF3 sing 181 n n CAV HAV DF3 sing 182 n n CAV HAVA DF3 sing 183 n n CBC NAW DF3 sing 184 n n NAW HNAW DF3 sing 185 n n CBB NAX DF3 sing 186 n n CBD NAX DF3 sing 187 n n NAX HNAX DF3 sing 188 n n OAY CBG DF3 sing 189 n n CBH OAZ DF3 sing 190 n n SBA CBI DF3 sing 191 n n CBE CBC DF3 sing 192 n n CBF CBM DF3 sing 193 n n CBG CBH DF3 doub 194 n y CBI CBJ DF3 sing 195 n y CBJ CBK DF3 doub 196 n y CBK NBL DF3 sing 197 n y # _atom_sites.entry_id 3IW5 _atom_sites.fract_transf_matrix[1][1] 0.014478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 361 1 BOG BOG . C 3 DF3 A 1 362 1 DF3 DF3 . D 2 BOG A 1 363 1 BOG BOG . E 4 HOH A 1 364 1 HOH HOH . E 4 HOH A 2 365 2 HOH HOH . E 4 HOH A 3 366 3 HOH HOH . E 4 HOH A 4 367 4 HOH HOH . E 4 HOH A 5 368 5 HOH HOH . E 4 HOH A 6 369 6 HOH HOH . E 4 HOH A 7 370 7 HOH HOH . E 4 HOH A 8 371 8 HOH HOH . E 4 HOH A 9 372 9 HOH HOH . E 4 HOH A 10 373 11 HOH HOH . E 4 HOH A 11 374 12 HOH HOH . E 4 HOH A 12 375 13 HOH HOH . E 4 HOH A 13 376 14 HOH HOH . E 4 HOH A 14 377 15 HOH HOH . E 4 HOH A 15 378 16 HOH HOH . E 4 HOH A 16 379 17 HOH HOH . E 4 HOH A 17 380 18 HOH HOH . E 4 HOH A 18 381 19 HOH HOH . E 4 HOH A 19 382 20 HOH HOH . E 4 HOH A 20 383 21 HOH HOH . E 4 HOH A 21 384 22 HOH HOH . E 4 HOH A 22 385 23 HOH HOH . E 4 HOH A 23 386 24 HOH HOH . E 4 HOH A 24 387 25 HOH HOH . E 4 HOH A 25 388 26 HOH HOH . E 4 HOH A 26 389 27 HOH HOH . E 4 HOH A 27 390 28 HOH HOH . E 4 HOH A 28 391 29 HOH HOH . E 4 HOH A 29 392 30 HOH HOH . E 4 HOH A 30 393 31 HOH HOH . E 4 HOH A 31 394 32 HOH HOH . E 4 HOH A 32 395 33 HOH HOH . E 4 HOH A 33 396 34 HOH HOH . E 4 HOH A 34 397 35 HOH HOH . E 4 HOH A 35 398 36 HOH HOH . E 4 HOH A 36 399 37 HOH HOH . E 4 HOH A 37 400 38 HOH HOH . E 4 HOH A 38 401 41 HOH HOH . E 4 HOH A 39 402 42 HOH HOH . E 4 HOH A 40 403 43 HOH HOH . E 4 HOH A 41 404 44 HOH HOH . E 4 HOH A 42 405 45 HOH HOH . E 4 HOH A 43 406 46 HOH HOH . E 4 HOH A 44 407 47 HOH HOH . E 4 HOH A 45 408 48 HOH HOH . E 4 HOH A 46 409 49 HOH HOH . E 4 HOH A 47 410 50 HOH HOH . E 4 HOH A 48 411 51 HOH HOH . E 4 HOH A 49 412 52 HOH HOH . E 4 HOH A 50 413 53 HOH HOH . E 4 HOH A 51 414 54 HOH HOH . E 4 HOH A 52 415 55 HOH HOH . E 4 HOH A 53 416 56 HOH HOH . E 4 HOH A 54 417 57 HOH HOH . E 4 HOH A 55 418 58 HOH HOH . E 4 HOH A 56 419 59 HOH HOH . E 4 HOH A 57 420 60 HOH HOH . E 4 HOH A 58 421 61 HOH HOH . E 4 HOH A 59 422 62 HOH HOH . E 4 HOH A 60 423 65 HOH HOH . E 4 HOH A 61 424 66 HOH HOH . E 4 HOH A 62 425 67 HOH HOH . E 4 HOH A 63 426 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA DF3 . . . C 3 20.815 1.4 -26.237 1 18.41 ? OAA DF3 362 A 1 HETATM 2 O OAB DF3 . . . C 3 22.133 1.021 -21.474 1 12.35 ? OAB DF3 362 A 1 HETATM 3 F FAC DF3 . . . C 3 23.475 -5.422 -19.231 1 20.86 ? FAC DF3 362 A 1 HETATM 4 F FAD DF3 . . . C 3 21.55 -4.901 -19.574 1 18.86 ? FAD DF3 362 A 1 HETATM 5 F FAE DF3 . . . C 3 22.589 -5.752 -21.193 1 21.86 ? FAE DF3 362 A 1 HETATM 6 C CAF DF3 . . . C 3 24.849 -2.267 -21.795 1 15.19 ? CAF DF3 362 A 1 HETATM 7 C CAG DF3 . . . C 3 17.621 3.612 -23.546 1 16.83 ? CAG DF3 362 A 1 HETATM 8 C CAH DF3 . . . C 3 17.531 3.938 -22.2 1 17.07 ? CAH DF3 362 A 1 HETATM 9 C CAI DF3 . . . C 3 24.123 -1.1 -21.575 1 15.93 ? CAI DF3 362 A 1 HETATM 10 C CAJ DF3 . . . C 3 24.372 -3.487 -21.318 1 15.3 ? CAJ DF3 362 A 1 HETATM 11 C CAK DF3 . . . C 3 21.551 3.577 -25.619 1 31.79 ? CAK DF3 362 A 1 HETATM 12 C CAL DF3 . . . C 3 21.506 4.933 -25.902 1 32.24 ? CAL DF3 362 A 1 HETATM 13 C CAM DF3 . . . C 3 18.082 2.361 -23.922 1 16.07 ? CAM DF3 362 A 1 HETATM 14 C CAN DF3 . . . C 3 17.915 2.992 -21.239 1 18.5 ? CAN DF3 362 A 1 HETATM 15 C CAO DF3 . . . C 3 21.213 3.974 -23.292 1 30.82 ? CAO DF3 362 A 1 HETATM 16 C CAP DF3 . . . C 3 22.419 -2.409 -20.416 1 15.5 ? CAP DF3 362 A 1 HETATM 17 C CAQ DF3 . . . C 3 19.162 -0.303 -21.796 1 16.8 ? CAQ DF3 362 A 1 HETATM 18 C CAR DF3 . . . C 3 20.361 1.107 -19.152 1 16.12 ? CAR DF3 362 A 1 HETATM 19 C CAS DF3 . . . C 3 21.256 7.95 -24.063 1 32.74 ? CAS DF3 362 A 1 HETATM 20 C CAT DF3 . . . C 3 20.321 7.319 -23.058 1 32.81 ? CAT DF3 362 A 1 HETATM 21 C CAU DF3 . . . C 3 18.962 0.546 -19.518 1 18.05 ? CAU DF3 362 A 1 HETATM 22 C CAV DF3 . . . C 3 21.029 -0.423 -24.78 1 18.24 ? CAV DF3 362 A 1 HETATM 23 N NAW DF3 . . . C 3 21.29 0.05 -19.553 1 20.06 ? NAW DF3 362 A 1 HETATM 24 N NAX DF3 . . . C 3 21.444 1.821 -24.122 1 24.77 ? NAX DF3 362 A 1 HETATM 25 O OAY DF3 . . . C 3 21.275 7.118 -25.214 1 31.86 ? OAY DF3 362 A 1 HETATM 26 O OAZ DF3 . . . C 3 20.986 6.16 -22.552 1 31.73 ? OAZ DF3 362 A 1 HETATM 27 S SBA DF3 . . . C 3 19.3 -0.861 -24.44 1 17.26 ? SBA DF3 362 A 1 HETATM 28 C CBB DF3 . . . C 3 21.091 1.032 -25.112 1 18.47 ? CBB DF3 362 A 1 HETATM 29 C CBC DF3 . . . C 3 22.086 0.099 -20.656 1 18.13 ? CBC DF3 362 A 1 HETATM 30 C CBD DF3 . . . C 3 21.444 3.098 -24.331 1 28.17 ? CBD DF3 362 A 1 HETATM 31 C CBE DF3 . . . C 3 22.918 -1.167 -20.875 1 17.12 ? CBE DF3 362 A 1 HETATM 32 C CBF DF3 . . . C 3 23.16 -3.562 -20.632 1 16.15 ? CBF DF3 362 A 1 HETATM 33 C CBG DF3 . . . C 3 21.317 5.809 -24.876 1 30.71 ? CBG DF3 362 A 1 HETATM 34 C CBH DF3 . . . C 3 21.165 5.324 -23.58 1 31.3 ? CBH DF3 362 A 1 HETATM 35 C CBI DF3 . . . C 3 18.955 0.13 -23.023 1 16.89 ? CBI DF3 362 A 1 HETATM 36 C CBJ DF3 . . . C 3 18.468 1.427 -22.973 1 14.73 ? CBJ DF3 362 A 1 HETATM 37 C CBK DF3 . . . C 3 18.394 1.74 -21.633 1 17.16 ? CBK DF3 362 A 1 HETATM 38 N NBL DF3 . . . C 3 18.829 0.67 -20.973 1 17.34 ? NBL DF3 362 A 1 HETATM 39 C CBM DF3 . . . C 3 22.693 -4.935 -20.149 1 19.41 ? CBM DF3 362 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #