data_3IW7 # _model_server_result.job_id AEDWyZuQtWprljvtgvZuGA _model_server_result.datetime_utc '2024-10-20 20:38:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":361}' # _entry.id 3IW7 # _exptl.entry_id 3IW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.576 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({4-[(4-benzylpiperidin-1-yl)carbonyl]benzyl}sulfanyl)-3H-imidazo[4,5-c]pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IW7 _cell.length_a 68.67 _cell.length_b 70.1 _cell.length_c 74.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H26 N4 O S' _chem_comp.formula_weight 442.576 _chem_comp.id IPK _chem_comp.mon_nstd_flag . _chem_comp.name 2-({4-[(4-benzylpiperidin-1-yl)carbonyl]benzyl}sulfanyl)-3H-imidazo[4,5-c]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAX IPK doub 221 n n CAB CAC IPK doub 222 n y CAD CAB IPK sing 223 n y CAD CAG IPK doub 224 n y CAF CAC IPK sing 225 n y CAG CAZ IPK sing 226 n y CAI CAY IPK doub 227 n y CAJ CAH IPK doub 228 n y CAK CAI IPK sing 229 n y CAK CBA IPK doub 230 n y CAO CBE IPK sing 231 n n CAP CAN IPK sing 232 n n CAQ CAO IPK sing 233 n n CAQ NBF IPK sing 234 n n CAR SAW IPK sing 235 n n CAX CBA IPK sing 236 n n CAX NBF IPK sing 237 n n CAY CAH IPK sing 238 n y CAY CAR IPK sing 239 n n CAZ CAF IPK doub 240 n y CAZ CAS IPK sing 241 n n CBA CAJ IPK sing 242 n y CBE CAN IPK sing 243 n n CBE CAS IPK sing 244 n n NBF CAP IPK sing 245 n n SAW C21 IPK sing 246 n n N2 C21 IPK sing 247 n y C21 N3 IPK doub 248 n y C22 N2 IPK sing 249 n y N3 C23 IPK sing 250 n y C24 C22 IPK sing 251 n y C22 C23 IPK doub 252 n y C23 C25 IPK sing 253 n y N4 C24 IPK doub 254 n y C25 C26 IPK doub 255 n y N4 C26 IPK sing 256 n y CAB HAB IPK sing 257 n n CAC HAC IPK sing 258 n n CAD HAD IPK sing 259 n n CAF HAF IPK sing 260 n n CAG HAG IPK sing 261 n n CAH HAH IPK sing 262 n n CAI HAI IPK sing 263 n n CAJ HAJ IPK sing 264 n n CAK HAK IPK sing 265 n n CAN HAN IPK sing 266 n n CAN HANA IPK sing 267 n n CAO HAO IPK sing 268 n n CAO HAOA IPK sing 269 n n CAP HAP IPK sing 270 n n CAP HAPA IPK sing 271 n n CAQ HAQ IPK sing 272 n n CAQ HAQA IPK sing 273 n n CAR HAR IPK sing 274 n n CAR HARA IPK sing 275 n n CAS HAS IPK sing 276 n n CAS HASA IPK sing 277 n n CBE HBE IPK sing 278 n n N2 H23 IPK sing 279 n n C24 H24 IPK sing 280 n n C25 H25 IPK sing 281 n n C26 H26 IPK sing 282 n n # _atom_sites.entry_id 3IW7 _atom_sites.fract_transf_matrix[1][1] 0.014562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 1000 1000 BOG BOG . C 3 IPK A 1 361 1 IPK IPK . D 2 BOG A 1 362 1 BOG BOG . E 2 BOG A 1 363 1000 BOG BOG . F 4 HOH A 1 364 1 HOH HOH . F 4 HOH A 2 365 2 HOH HOH . F 4 HOH A 3 366 3 HOH HOH . F 4 HOH A 4 367 4 HOH HOH . F 4 HOH A 5 368 5 HOH HOH . F 4 HOH A 6 369 6 HOH HOH . F 4 HOH A 7 370 7 HOH HOH . F 4 HOH A 8 371 8 HOH HOH . F 4 HOH A 9 372 9 HOH HOH . F 4 HOH A 10 373 10 HOH HOH . F 4 HOH A 11 374 11 HOH HOH . F 4 HOH A 12 375 12 HOH HOH . F 4 HOH A 13 376 13 HOH HOH . F 4 HOH A 14 377 14 HOH HOH . F 4 HOH A 15 378 15 HOH HOH . F 4 HOH A 16 379 16 HOH HOH . F 4 HOH A 17 380 17 HOH HOH . F 4 HOH A 18 381 18 HOH HOH . F 4 HOH A 19 382 19 HOH HOH . F 4 HOH A 20 383 20 HOH HOH . F 4 HOH A 21 384 21 HOH HOH . F 4 HOH A 22 385 22 HOH HOH . F 4 HOH A 23 386 23 HOH HOH . F 4 HOH A 24 387 24 HOH HOH . F 4 HOH A 25 388 25 HOH HOH . F 4 HOH A 26 389 26 HOH HOH . F 4 HOH A 27 390 29 HOH HOH . F 4 HOH A 28 391 30 HOH HOH . F 4 HOH A 29 392 31 HOH HOH . F 4 HOH A 30 393 32 HOH HOH . F 4 HOH A 31 394 33 HOH HOH . F 4 HOH A 32 395 34 HOH HOH . F 4 HOH A 33 396 35 HOH HOH . F 4 HOH A 34 397 36 HOH HOH . F 4 HOH A 35 398 37 HOH HOH . F 4 HOH A 36 399 38 HOH HOH . F 4 HOH A 37 400 39 HOH HOH . F 4 HOH A 38 401 40 HOH HOH . F 4 HOH A 39 402 41 HOH HOH . F 4 HOH A 40 403 43 HOH HOH . F 4 HOH A 41 404 45 HOH HOH . F 4 HOH A 42 405 46 HOH HOH . F 4 HOH A 43 406 47 HOH HOH . F 4 HOH A 44 407 48 HOH HOH . F 4 HOH A 45 408 49 HOH HOH . F 4 HOH A 46 409 50 HOH HOH . F 4 HOH A 47 410 51 HOH HOH . F 4 HOH A 48 411 52 HOH HOH . F 4 HOH A 49 412 54 HOH HOH . F 4 HOH A 50 413 55 HOH HOH . F 4 HOH A 51 414 56 HOH HOH . F 4 HOH A 52 415 57 HOH HOH . F 4 HOH A 53 416 58 HOH HOH . F 4 HOH A 54 417 59 HOH HOH . F 4 HOH A 55 418 60 HOH HOH . F 4 HOH A 56 419 61 HOH HOH . F 4 HOH A 57 420 63 HOH HOH . F 4 HOH A 58 421 64 HOH HOH . F 4 HOH A 59 422 65 HOH HOH . F 4 HOH A 60 423 67 HOH HOH . F 4 HOH A 61 424 68 HOH HOH . F 4 HOH A 62 425 69 HOH HOH . F 4 HOH A 63 426 70 HOH HOH . F 4 HOH A 64 427 71 HOH HOH . F 4 HOH A 65 428 72 HOH HOH . F 4 HOH A 66 429 73 HOH HOH . F 4 HOH A 67 430 74 HOH HOH . F 4 HOH A 68 431 75 HOH HOH . F 4 HOH A 69 432 76 HOH HOH . F 4 HOH A 70 433 77 HOH HOH . F 4 HOH A 71 434 78 HOH HOH . F 4 HOH A 72 435 79 HOH HOH . F 4 HOH A 73 436 80 HOH HOH . F 4 HOH A 74 437 81 HOH HOH . F 4 HOH A 75 438 82 HOH HOH . F 4 HOH A 76 439 83 HOH HOH . F 4 HOH A 77 440 84 HOH HOH . F 4 HOH A 78 441 85 HOH HOH . F 4 HOH A 79 442 86 HOH HOH . F 4 HOH A 80 443 87 HOH HOH . F 4 HOH A 81 444 88 HOH HOH . F 4 HOH A 82 445 89 HOH HOH . F 4 HOH A 83 446 90 HOH HOH . F 4 HOH A 84 447 91 HOH HOH . F 4 HOH A 85 448 92 HOH HOH . F 4 HOH A 86 449 93 HOH HOH . F 4 HOH A 87 450 94 HOH HOH . F 4 HOH A 88 451 95 HOH HOH . F 4 HOH A 89 452 96 HOH HOH . F 4 HOH A 90 453 98 HOH HOH . F 4 HOH A 91 454 99 HOH HOH . F 4 HOH A 92 455 100 HOH HOH . F 4 HOH A 93 456 103 HOH HOH . F 4 HOH A 94 457 104 HOH HOH . F 4 HOH A 95 458 105 HOH HOH . F 4 HOH A 96 459 106 HOH HOH . F 4 HOH A 97 460 107 HOH HOH . F 4 HOH A 98 461 109 HOH HOH . F 4 HOH A 99 462 110 HOH HOH . F 4 HOH A 100 463 111 HOH HOH . F 4 HOH A 101 464 112 HOH HOH . F 4 HOH A 102 465 114 HOH HOH . F 4 HOH A 103 466 115 HOH HOH . F 4 HOH A 104 467 116 HOH HOH . F 4 HOH A 105 468 117 HOH HOH . F 4 HOH A 106 469 118 HOH HOH . F 4 HOH A 107 470 119 HOH HOH . F 4 HOH A 108 471 120 HOH HOH . F 4 HOH A 109 472 121 HOH HOH . F 4 HOH A 110 473 122 HOH HOH . F 4 HOH A 111 474 123 HOH HOH . F 4 HOH A 112 475 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA IPK . . . C 3 19.847 1.265 -26.227 1 30.29 ? OAA IPK 361 A 1 HETATM 2 C CAB IPK . . . C 3 23.384 -4.685 -20.972 1 29.53 ? CAB IPK 361 A 1 HETATM 3 C CAC IPK . . . C 3 22.124 -4.37 -20.459 1 29.96 ? CAC IPK 361 A 1 HETATM 4 C CAD IPK . . . C 3 24.205 -3.666 -21.475 1 28.99 ? CAD IPK 361 A 1 HETATM 5 C CAF IPK . . . C 3 21.683 -3.051 -20.462 1 28.34 ? CAF IPK 361 A 1 HETATM 6 C CAG IPK . . . C 3 23.771 -2.346 -21.47 1 27.91 ? CAG IPK 361 A 1 HETATM 7 C CAH IPK . . . C 3 17.832 4.983 -24.207 1 33.24 ? CAH IPK 361 A 1 HETATM 8 C CAI IPK . . . C 3 20.007 5.553 -25.11 1 33.91 ? CAI IPK 361 A 1 HETATM 9 C CAJ IPK . . . C 3 18.105 3.635 -24.393 1 31.44 ? CAJ IPK 361 A 1 HETATM 10 C CAK IPK . . . C 3 20.277 4.199 -25.291 1 32.26 ? CAK IPK 361 A 1 HETATM 11 C CAN IPK . . . C 3 20.089 0.743 -21.604 1 30.48 ? CAN IPK 361 A 1 HETATM 12 C CAO IPK . . . C 3 20.815 -1.121 -23.175 1 29.08 ? CAO IPK 361 A 1 HETATM 13 C CAP IPK . . . C 3 19.316 1.461 -22.697 1 30.42 ? CAP IPK 361 A 1 HETATM 14 C CAQ IPK . . . C 3 19.871 -0.559 -24.257 1 30.01 ? CAQ IPK 361 A 1 HETATM 15 C CAR IPK . . . C 3 18.424 7.449 -24.345 1 35.84 ? CAR IPK 361 A 1 HETATM 16 C CAS IPK . . . C 3 22.049 -0.589 -20.954 1 28.18 ? CAS IPK 361 A 1 HETATM 17 S SAW IPK . . . C 3 19.698 8.334 -23.34 1 46.37 ? SAW IPK 361 A 1 HETATM 18 C CAX IPK . . . C 3 19.612 1.724 -25.116 1 32.09 ? CAX IPK 361 A 1 HETATM 19 C CAY IPK . . . C 3 18.774 5.952 -24.561 1 35.56 ? CAY IPK 361 A 1 HETATM 20 C CAZ IPK . . . C 3 22.509 -2.046 -20.982 1 28.44 ? CAZ IPK 361 A 1 HETATM 21 C CBA IPK . . . C 3 19.329 3.236 -24.929 1 32.13 ? CBA IPK 361 A 1 HETATM 22 C CBE IPK . . . C 3 21.276 -0.055 -22.164 1 29.8 ? CBE IPK 361 A 1 HETATM 23 N NBF IPK . . . C 3 19.598 0.897 -24.065 1 30.87 ? NBF IPK 361 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #