data_3IW7
#
_model_server_result.job_id            I2URh-eBnuiuvOShbzX2Iw 
_model_server_result.datetime_utc      '2024-11-22 19:47:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3iw7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":361}' 
#
_entry.id    3IW7 
#
_exptl.entry_id    3IW7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              442.576 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-({4-[(4-benzylpiperidin-1-yl)carbonyl]benzyl}sulfanyl)-3H-imidazo[4,5-c]pyridine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IW7 
_cell.length_a            68.67 
_cell.length_b            70.1 
_cell.length_c            74.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IW7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C26 H26 N4 O S' 
_chem_comp.formula_weight    442.576 
_chem_comp.id                IPK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-({4-[(4-benzylpiperidin-1-yl)carbonyl]benzyl}sulfanyl)-3H-imidazo[4,5-c]pyridine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAX IPK doub 221 n n 
CAB CAC IPK doub 222 n y 
CAD CAB IPK sing 223 n y 
CAD CAG IPK doub 224 n y 
CAF CAC IPK sing 225 n y 
CAG CAZ IPK sing 226 n y 
CAI CAY IPK doub 227 n y 
CAJ CAH IPK doub 228 n y 
CAK CAI IPK sing 229 n y 
CAK CBA IPK doub 230 n y 
CAO CBE IPK sing 231 n n 
CAP CAN IPK sing 232 n n 
CAQ CAO IPK sing 233 n n 
CAQ NBF IPK sing 234 n n 
CAR SAW IPK sing 235 n n 
CAX CBA IPK sing 236 n n 
CAX NBF IPK sing 237 n n 
CAY CAH IPK sing 238 n y 
CAY CAR IPK sing 239 n n 
CAZ CAF IPK doub 240 n y 
CAZ CAS IPK sing 241 n n 
CBA CAJ IPK sing 242 n y 
CBE CAN IPK sing 243 n n 
CBE CAS IPK sing 244 n n 
NBF CAP IPK sing 245 n n 
SAW C21 IPK sing 246 n n 
N2 C21 IPK sing 247 n y 
C21 N3 IPK doub 248 n y 
C22 N2 IPK sing 249 n y 
N3 C23 IPK sing 250 n y 
C24 C22 IPK sing 251 n y 
C22 C23 IPK doub 252 n y 
C23 C25 IPK sing 253 n y 
N4 C24 IPK doub 254 n y 
C25 C26 IPK doub 255 n y 
N4 C26 IPK sing 256 n y 
CAB HAB IPK sing 257 n n 
CAC HAC IPK sing 258 n n 
CAD HAD IPK sing 259 n n 
CAF HAF IPK sing 260 n n 
CAG HAG IPK sing 261 n n 
CAH HAH IPK sing 262 n n 
CAI HAI IPK sing 263 n n 
CAJ HAJ IPK sing 264 n n 
CAK HAK IPK sing 265 n n 
CAN HAN IPK sing 266 n n 
CAN HANA IPK sing 267 n n 
CAO HAO IPK sing 268 n n 
CAO HAOA IPK sing 269 n n 
CAP HAP IPK sing 270 n n 
CAP HAPA IPK sing 271 n n 
CAQ HAQ IPK sing 272 n n 
CAQ HAQA IPK sing 273 n n 
CAR HAR IPK sing 274 n n 
CAR HARA IPK sing 275 n n 
CAS HAS IPK sing 276 n n 
CAS HASA IPK sing 277 n n 
CBE HBE IPK sing 278 n n 
N2 H23 IPK sing 279 n n 
C24 H24 IPK sing 280 n n 
C25 H25 IPK sing 281 n n 
C26 H26 IPK sing 282 n n 
#
_atom_sites.entry_id                     3IW7 
_atom_sites.fract_transf_matrix[1][1]    0.014562 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 1000 1000 BOG BOG . 
C 3 IPK A 1 361 1 IPK IPK . 
D 2 BOG A 1 362 1 BOG BOG . 
E 2 BOG A 1 363 1000 BOG BOG . 
F 4 HOH A 1 364 1 HOH HOH . 
F 4 HOH A 2 365 2 HOH HOH . 
F 4 HOH A 3 366 3 HOH HOH . 
F 4 HOH A 4 367 4 HOH HOH . 
F 4 HOH A 5 368 5 HOH HOH . 
F 4 HOH A 6 369 6 HOH HOH . 
F 4 HOH A 7 370 7 HOH HOH . 
F 4 HOH A 8 371 8 HOH HOH . 
F 4 HOH A 9 372 9 HOH HOH . 
F 4 HOH A 10 373 10 HOH HOH . 
F 4 HOH A 11 374 11 HOH HOH . 
F 4 HOH A 12 375 12 HOH HOH . 
F 4 HOH A 13 376 13 HOH HOH . 
F 4 HOH A 14 377 14 HOH HOH . 
F 4 HOH A 15 378 15 HOH HOH . 
F 4 HOH A 16 379 16 HOH HOH . 
F 4 HOH A 17 380 17 HOH HOH . 
F 4 HOH A 18 381 18 HOH HOH . 
F 4 HOH A 19 382 19 HOH HOH . 
F 4 HOH A 20 383 20 HOH HOH . 
F 4 HOH A 21 384 21 HOH HOH . 
F 4 HOH A 22 385 22 HOH HOH . 
F 4 HOH A 23 386 23 HOH HOH . 
F 4 HOH A 24 387 24 HOH HOH . 
F 4 HOH A 25 388 25 HOH HOH . 
F 4 HOH A 26 389 26 HOH HOH . 
F 4 HOH A 27 390 29 HOH HOH . 
F 4 HOH A 28 391 30 HOH HOH . 
F 4 HOH A 29 392 31 HOH HOH . 
F 4 HOH A 30 393 32 HOH HOH . 
F 4 HOH A 31 394 33 HOH HOH . 
F 4 HOH A 32 395 34 HOH HOH . 
F 4 HOH A 33 396 35 HOH HOH . 
F 4 HOH A 34 397 36 HOH HOH . 
F 4 HOH A 35 398 37 HOH HOH . 
F 4 HOH A 36 399 38 HOH HOH . 
F 4 HOH A 37 400 39 HOH HOH . 
F 4 HOH A 38 401 40 HOH HOH . 
F 4 HOH A 39 402 41 HOH HOH . 
F 4 HOH A 40 403 43 HOH HOH . 
F 4 HOH A 41 404 45 HOH HOH . 
F 4 HOH A 42 405 46 HOH HOH . 
F 4 HOH A 43 406 47 HOH HOH . 
F 4 HOH A 44 407 48 HOH HOH . 
F 4 HOH A 45 408 49 HOH HOH . 
F 4 HOH A 46 409 50 HOH HOH . 
F 4 HOH A 47 410 51 HOH HOH . 
F 4 HOH A 48 411 52 HOH HOH . 
F 4 HOH A 49 412 54 HOH HOH . 
F 4 HOH A 50 413 55 HOH HOH . 
F 4 HOH A 51 414 56 HOH HOH . 
F 4 HOH A 52 415 57 HOH HOH . 
F 4 HOH A 53 416 58 HOH HOH . 
F 4 HOH A 54 417 59 HOH HOH . 
F 4 HOH A 55 418 60 HOH HOH . 
F 4 HOH A 56 419 61 HOH HOH . 
F 4 HOH A 57 420 63 HOH HOH . 
F 4 HOH A 58 421 64 HOH HOH . 
F 4 HOH A 59 422 65 HOH HOH . 
F 4 HOH A 60 423 67 HOH HOH . 
F 4 HOH A 61 424 68 HOH HOH . 
F 4 HOH A 62 425 69 HOH HOH . 
F 4 HOH A 63 426 70 HOH HOH . 
F 4 HOH A 64 427 71 HOH HOH . 
F 4 HOH A 65 428 72 HOH HOH . 
F 4 HOH A 66 429 73 HOH HOH . 
F 4 HOH A 67 430 74 HOH HOH . 
F 4 HOH A 68 431 75 HOH HOH . 
F 4 HOH A 69 432 76 HOH HOH . 
F 4 HOH A 70 433 77 HOH HOH . 
F 4 HOH A 71 434 78 HOH HOH . 
F 4 HOH A 72 435 79 HOH HOH . 
F 4 HOH A 73 436 80 HOH HOH . 
F 4 HOH A 74 437 81 HOH HOH . 
F 4 HOH A 75 438 82 HOH HOH . 
F 4 HOH A 76 439 83 HOH HOH . 
F 4 HOH A 77 440 84 HOH HOH . 
F 4 HOH A 78 441 85 HOH HOH . 
F 4 HOH A 79 442 86 HOH HOH . 
F 4 HOH A 80 443 87 HOH HOH . 
F 4 HOH A 81 444 88 HOH HOH . 
F 4 HOH A 82 445 89 HOH HOH . 
F 4 HOH A 83 446 90 HOH HOH . 
F 4 HOH A 84 447 91 HOH HOH . 
F 4 HOH A 85 448 92 HOH HOH . 
F 4 HOH A 86 449 93 HOH HOH . 
F 4 HOH A 87 450 94 HOH HOH . 
F 4 HOH A 88 451 95 HOH HOH . 
F 4 HOH A 89 452 96 HOH HOH . 
F 4 HOH A 90 453 98 HOH HOH . 
F 4 HOH A 91 454 99 HOH HOH . 
F 4 HOH A 92 455 100 HOH HOH . 
F 4 HOH A 93 456 103 HOH HOH . 
F 4 HOH A 94 457 104 HOH HOH . 
F 4 HOH A 95 458 105 HOH HOH . 
F 4 HOH A 96 459 106 HOH HOH . 
F 4 HOH A 97 460 107 HOH HOH . 
F 4 HOH A 98 461 109 HOH HOH . 
F 4 HOH A 99 462 110 HOH HOH . 
F 4 HOH A 100 463 111 HOH HOH . 
F 4 HOH A 101 464 112 HOH HOH . 
F 4 HOH A 102 465 114 HOH HOH . 
F 4 HOH A 103 466 115 HOH HOH . 
F 4 HOH A 104 467 116 HOH HOH . 
F 4 HOH A 105 468 117 HOH HOH . 
F 4 HOH A 106 469 118 HOH HOH . 
F 4 HOH A 107 470 119 HOH HOH . 
F 4 HOH A 108 471 120 HOH HOH . 
F 4 HOH A 109 472 121 HOH HOH . 
F 4 HOH A 110 473 122 HOH HOH . 
F 4 HOH A 111 474 123 HOH HOH . 
F 4 HOH A 112 475 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA IPK . . . C 3 19.847 1.265 -26.227 1 30.29 ? OAA IPK 361 A 1 
HETATM 2 C CAB IPK . . . C 3 23.384 -4.685 -20.972 1 29.53 ? CAB IPK 361 A 1 
HETATM 3 C CAC IPK . . . C 3 22.124 -4.37 -20.459 1 29.96 ? CAC IPK 361 A 1 
HETATM 4 C CAD IPK . . . C 3 24.205 -3.666 -21.475 1 28.99 ? CAD IPK 361 A 1 
HETATM 5 C CAF IPK . . . C 3 21.683 -3.051 -20.462 1 28.34 ? CAF IPK 361 A 1 
HETATM 6 C CAG IPK . . . C 3 23.771 -2.346 -21.47 1 27.91 ? CAG IPK 361 A 1 
HETATM 7 C CAH IPK . . . C 3 17.832 4.983 -24.207 1 33.24 ? CAH IPK 361 A 1 
HETATM 8 C CAI IPK . . . C 3 20.007 5.553 -25.11 1 33.91 ? CAI IPK 361 A 1 
HETATM 9 C CAJ IPK . . . C 3 18.105 3.635 -24.393 1 31.44 ? CAJ IPK 361 A 1 
HETATM 10 C CAK IPK . . . C 3 20.277 4.199 -25.291 1 32.26 ? CAK IPK 361 A 1 
HETATM 11 C CAN IPK . . . C 3 20.089 0.743 -21.604 1 30.48 ? CAN IPK 361 A 1 
HETATM 12 C CAO IPK . . . C 3 20.815 -1.121 -23.175 1 29.08 ? CAO IPK 361 A 1 
HETATM 13 C CAP IPK . . . C 3 19.316 1.461 -22.697 1 30.42 ? CAP IPK 361 A 1 
HETATM 14 C CAQ IPK . . . C 3 19.871 -0.559 -24.257 1 30.01 ? CAQ IPK 361 A 1 
HETATM 15 C CAR IPK . . . C 3 18.424 7.449 -24.345 1 35.84 ? CAR IPK 361 A 1 
HETATM 16 C CAS IPK . . . C 3 22.049 -0.589 -20.954 1 28.18 ? CAS IPK 361 A 1 
HETATM 17 S SAW IPK . . . C 3 19.698 8.334 -23.34 1 46.37 ? SAW IPK 361 A 1 
HETATM 18 C CAX IPK . . . C 3 19.612 1.724 -25.116 1 32.09 ? CAX IPK 361 A 1 
HETATM 19 C CAY IPK . . . C 3 18.774 5.952 -24.561 1 35.56 ? CAY IPK 361 A 1 
HETATM 20 C CAZ IPK . . . C 3 22.509 -2.046 -20.982 1 28.44 ? CAZ IPK 361 A 1 
HETATM 21 C CBA IPK . . . C 3 19.329 3.236 -24.929 1 32.13 ? CBA IPK 361 A 1 
HETATM 22 C CBE IPK . . . C 3 21.276 -0.055 -22.164 1 29.8 ? CBE IPK 361 A 1 
HETATM 23 N NBF IPK . . . C 3 19.598 0.897 -24.065 1 30.87 ? NBF IPK 361 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#