data_3IWF
#
_model_server_result.job_id            ZhoSgfEcQerT8YCZ9MPKgQ 
_model_server_result.datetime_utc      '2024-11-27 07:42:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3iwf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":109}' 
#
_entry.id    3IWF 
#
_exptl.entry_id    3IWF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IWF 
_cell.length_a            48.921 
_cell.length_b            54.028 
_cell.length_c            173.044 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IWF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,C,D,E,F,G,L 2 1 
B,H,I,J,K,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N PRO 2 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale2 A C ASN 35 A ASN 35 1_555 A N MSE 36 A MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 A C MSE 36 A MSE 36 1_555 A N THR 37 A THR 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale4 B C MSE 1 B MSE 1 1_555 B N PRO 2 B PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale5 B C ASN 35 B ASN 35 1_555 B N MSE 36 B MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 B C MSE 36 B MSE 36 1_555 B N THR 37 B THR 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
metalc ? metalc1 A NE2 HIS 31 A HIS 31 1_555 D NI NI . A NI 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 D NI NI . A NI 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc3 D NI NI . A NI 109 1_555 I O1 TRS . B TRS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc4 D NI NI . A NI 109 1_555 I N TRS . B TRS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc5 D NI NI . A NI 109 1_555 I O2 TRS . B TRS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc6 D NI NI . A NI 109 1_555 M O HOH . B HOH 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc7 B NE2 HIS 31 B HIS 31 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc8 B NE2 HIS 100 B HIS 100 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc9 H N TRS . B TRS 108 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc10 H O1 TRS . B TRS 108 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc11 H O3 TRS . B TRS 108 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc12 K NI NI . B NI 111 1_555 M O HOH . B HOH 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3IWF 
_atom_sites.fract_transf_matrix[1][1]    0.020441 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005779 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 108 2 CL CL . 
D 3 NI A 1 109 4 NI NI . 
E 4 NA A 1 110 5 NA NA . 
F 5 MXE A 1 111 1 MXE MXE . 
G 5 MXE A 1 112 2 MXE MXE . 
H 6 TRS B 1 108 1 TRS TRS . 
I 6 TRS B 1 109 2 TRS TRS . 
J 2 CL B 1 110 1 CL CL . 
K 3 NI B 1 111 3 NI NI . 
L 7 HOH A 1 113 2 HOH HOH . 
L 7 HOH A 2 114 6 HOH HOH . 
L 7 HOH A 3 115 115 HOH HOH . 
L 7 HOH A 4 116 7 HOH HOH . 
L 7 HOH A 5 117 117 HOH HOH . 
L 7 HOH A 6 118 118 HOH HOH . 
L 7 HOH A 7 119 8 HOH HOH . 
L 7 HOH A 8 120 11 HOH HOH . 
L 7 HOH A 9 121 13 HOH HOH . 
L 7 HOH A 10 122 14 HOH HOH . 
L 7 HOH A 11 123 123 HOH HOH . 
L 7 HOH A 12 124 21 HOH HOH . 
L 7 HOH A 13 125 26 HOH HOH . 
L 7 HOH A 14 126 126 HOH HOH . 
L 7 HOH A 15 127 27 HOH HOH . 
L 7 HOH A 16 128 30 HOH HOH . 
L 7 HOH A 17 129 32 HOH HOH . 
L 7 HOH A 18 130 34 HOH HOH . 
L 7 HOH A 19 131 131 HOH HOH . 
L 7 HOH A 20 132 36 HOH HOH . 
L 7 HOH A 21 133 133 HOH HOH . 
L 7 HOH A 22 134 37 HOH HOH . 
L 7 HOH A 23 135 135 HOH HOH . 
L 7 HOH A 24 136 41 HOH HOH . 
L 7 HOH A 25 137 137 HOH HOH . 
L 7 HOH A 26 138 138 HOH HOH . 
L 7 HOH A 27 139 139 HOH HOH . 
L 7 HOH A 28 140 140 HOH HOH . 
L 7 HOH A 29 141 141 HOH HOH . 
L 7 HOH A 30 142 142 HOH HOH . 
L 7 HOH A 31 143 143 HOH HOH . 
L 7 HOH A 32 144 144 HOH HOH . 
L 7 HOH A 33 145 45 HOH HOH . 
L 7 HOH A 34 146 146 HOH HOH . 
L 7 HOH A 35 147 46 HOH HOH . 
L 7 HOH A 36 148 47 HOH HOH . 
L 7 HOH A 37 149 49 HOH HOH . 
L 7 HOH A 38 150 51 HOH HOH . 
L 7 HOH A 39 151 151 HOH HOH . 
L 7 HOH A 40 152 152 HOH HOH . 
L 7 HOH A 41 153 153 HOH HOH . 
L 7 HOH A 42 154 154 HOH HOH . 
L 7 HOH A 43 155 52 HOH HOH . 
L 7 HOH A 44 156 53 HOH HOH . 
L 7 HOH A 45 157 54 HOH HOH . 
L 7 HOH A 46 158 55 HOH HOH . 
L 7 HOH A 47 159 57 HOH HOH . 
L 7 HOH A 48 160 160 HOH HOH . 
L 7 HOH A 49 161 161 HOH HOH . 
L 7 HOH A 50 162 58 HOH HOH . 
L 7 HOH A 51 163 163 HOH HOH . 
L 7 HOH A 52 164 164 HOH HOH . 
L 7 HOH A 53 165 59 HOH HOH . 
L 7 HOH A 54 166 166 HOH HOH . 
L 7 HOH A 55 167 60 HOH HOH . 
L 7 HOH A 56 168 61 HOH HOH . 
L 7 HOH A 57 169 62 HOH HOH . 
L 7 HOH A 58 170 64 HOH HOH . 
L 7 HOH A 59 171 67 HOH HOH . 
L 7 HOH A 60 172 68 HOH HOH . 
L 7 HOH A 61 173 70 HOH HOH . 
L 7 HOH A 62 174 73 HOH HOH . 
L 7 HOH A 63 175 75 HOH HOH . 
L 7 HOH A 64 176 83 HOH HOH . 
L 7 HOH A 65 177 84 HOH HOH . 
L 7 HOH A 66 178 85 HOH HOH . 
L 7 HOH A 67 179 86 HOH HOH . 
L 7 HOH A 68 180 87 HOH HOH . 
L 7 HOH A 69 181 89 HOH HOH . 
L 7 HOH A 70 182 91 HOH HOH . 
L 7 HOH A 71 183 93 HOH HOH . 
L 7 HOH A 72 184 94 HOH HOH . 
L 7 HOH A 73 185 97 HOH HOH . 
L 7 HOH A 74 186 100 HOH HOH . 
L 7 HOH A 75 187 101 HOH HOH . 
L 7 HOH A 76 188 107 HOH HOH . 
L 7 HOH A 77 189 108 HOH HOH . 
L 7 HOH A 78 190 110 HOH HOH . 
L 7 HOH A 79 191 112 HOH HOH . 
M 7 HOH B 1 112 1 HOH HOH . 
M 7 HOH B 2 113 113 HOH HOH . 
M 7 HOH B 3 114 114 HOH HOH . 
M 7 HOH B 4 115 3 HOH HOH . 
M 7 HOH B 5 116 116 HOH HOH . 
M 7 HOH B 6 117 4 HOH HOH . 
M 7 HOH B 7 118 5 HOH HOH . 
M 7 HOH B 8 119 119 HOH HOH . 
M 7 HOH B 9 120 120 HOH HOH . 
M 7 HOH B 10 121 121 HOH HOH . 
M 7 HOH B 11 122 122 HOH HOH . 
M 7 HOH B 12 123 9 HOH HOH . 
M 7 HOH B 13 124 124 HOH HOH . 
M 7 HOH B 14 125 125 HOH HOH . 
M 7 HOH B 15 126 10 HOH HOH . 
M 7 HOH B 16 127 127 HOH HOH . 
M 7 HOH B 17 128 128 HOH HOH . 
M 7 HOH B 18 129 129 HOH HOH . 
M 7 HOH B 19 130 130 HOH HOH . 
M 7 HOH B 20 131 12 HOH HOH . 
M 7 HOH B 21 132 132 HOH HOH . 
M 7 HOH B 22 133 15 HOH HOH . 
M 7 HOH B 23 134 134 HOH HOH . 
M 7 HOH B 24 135 16 HOH HOH . 
M 7 HOH B 25 136 136 HOH HOH . 
M 7 HOH B 26 137 17 HOH HOH . 
M 7 HOH B 27 138 18 HOH HOH . 
M 7 HOH B 28 139 19 HOH HOH . 
M 7 HOH B 29 140 20 HOH HOH . 
M 7 HOH B 30 141 22 HOH HOH . 
M 7 HOH B 31 142 23 HOH HOH . 
M 7 HOH B 32 143 24 HOH HOH . 
M 7 HOH B 33 144 25 HOH HOH . 
M 7 HOH B 34 145 145 HOH HOH . 
M 7 HOH B 35 146 28 HOH HOH . 
M 7 HOH B 36 147 147 HOH HOH . 
M 7 HOH B 37 148 148 HOH HOH . 
M 7 HOH B 38 149 149 HOH HOH . 
M 7 HOH B 39 150 150 HOH HOH . 
M 7 HOH B 40 151 29 HOH HOH . 
M 7 HOH B 41 152 31 HOH HOH . 
M 7 HOH B 42 153 33 HOH HOH . 
M 7 HOH B 43 154 35 HOH HOH . 
M 7 HOH B 44 155 155 HOH HOH . 
M 7 HOH B 45 156 156 HOH HOH . 
M 7 HOH B 46 157 157 HOH HOH . 
M 7 HOH B 47 158 158 HOH HOH . 
M 7 HOH B 48 159 159 HOH HOH . 
M 7 HOH B 49 160 38 HOH HOH . 
M 7 HOH B 50 161 39 HOH HOH . 
M 7 HOH B 51 162 162 HOH HOH . 
M 7 HOH B 52 163 40 HOH HOH . 
M 7 HOH B 53 164 42 HOH HOH . 
M 7 HOH B 54 165 165 HOH HOH . 
M 7 HOH B 55 166 43 HOH HOH . 
M 7 HOH B 56 167 167 HOH HOH . 
M 7 HOH B 57 168 168 HOH HOH . 
M 7 HOH B 58 169 44 HOH HOH . 
M 7 HOH B 59 170 48 HOH HOH . 
M 7 HOH B 60 171 50 HOH HOH . 
M 7 HOH B 61 172 56 HOH HOH . 
M 7 HOH B 62 173 63 HOH HOH . 
M 7 HOH B 63 174 65 HOH HOH . 
M 7 HOH B 64 175 66 HOH HOH . 
M 7 HOH B 65 176 69 HOH HOH . 
M 7 HOH B 66 177 71 HOH HOH . 
M 7 HOH B 67 178 72 HOH HOH . 
M 7 HOH B 68 179 74 HOH HOH . 
M 7 HOH B 69 180 76 HOH HOH . 
M 7 HOH B 70 181 77 HOH HOH . 
M 7 HOH B 71 182 78 HOH HOH . 
M 7 HOH B 72 183 79 HOH HOH . 
M 7 HOH B 73 184 80 HOH HOH . 
M 7 HOH B 74 185 81 HOH HOH . 
M 7 HOH B 75 186 82 HOH HOH . 
M 7 HOH B 76 187 88 HOH HOH . 
M 7 HOH B 77 188 90 HOH HOH . 
M 7 HOH B 78 189 92 HOH HOH . 
M 7 HOH B 79 190 95 HOH HOH . 
M 7 HOH B 80 191 96 HOH HOH . 
M 7 HOH B 81 192 98 HOH HOH . 
M 7 HOH B 82 193 99 HOH HOH . 
M 7 HOH B 83 194 102 HOH HOH . 
M 7 HOH B 84 195 103 HOH HOH . 
M 7 HOH B 85 196 104 HOH HOH . 
M 7 HOH B 86 197 105 HOH HOH . 
M 7 HOH B 87 198 106 HOH HOH . 
M 7 HOH B 88 199 109 HOH HOH . 
M 7 HOH B 89 200 111 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               12.268 
_atom_site.Cartn_y               -6.1 
_atom_site.Cartn_z               22.962 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.7 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           109 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#