data_3IWF # _model_server_result.job_id hSIYf7uBkSLgJeq8-lyarQ _model_server_result.datetime_utc '2024-10-19 08:22:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":110}' # _entry.id 3IWF # _exptl.entry_id 3IWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IWF _cell.length_a 48.921 _cell.length_b 54.028 _cell.length_c 173.044 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,C,D,E,F,G,L 2 1 B,H,I,J,K,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N PRO 2 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale2 A C ASN 35 A ASN 35 1_555 A N MSE 36 A MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 36 A MSE 36 1_555 A N THR 37 A THR 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 B C MSE 1 B MSE 1 1_555 B N PRO 2 B PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 B C ASN 35 B ASN 35 1_555 B N MSE 36 B MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 B C MSE 36 B MSE 36 1_555 B N THR 37 B THR 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A NE2 HIS 31 A HIS 31 1_555 D NI NI . A NI 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 D NI NI . A NI 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 B NE2 HIS 31 B HIS 31 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc4 B NE2 HIS 100 B HIS 100 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 D NI NI . A NI 109 1_555 I O1 TRS . B TRS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 D NI NI . A NI 109 1_555 M O HOH . B HOH 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 D NI NI . A NI 109 1_555 I N TRS . B TRS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc8 D NI NI . A NI 109 1_555 I O2 TRS . B TRS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc9 H N TRS . B TRS 108 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc10 H O1 TRS . B TRS 108 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc11 H O3 TRS . B TRS 108 1_555 K NI NI . B NI 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc12 K NI NI . B NI 111 1_555 M O HOH . B HOH 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IWF _atom_sites.fract_transf_matrix[1][1] 0.020441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 108 2 CL CL . D 3 NI A 1 109 4 NI NI . E 4 NA A 1 110 5 NA NA . F 5 MXE A 1 111 1 MXE MXE . G 5 MXE A 1 112 2 MXE MXE . H 6 TRS B 1 108 1 TRS TRS . I 6 TRS B 1 109 2 TRS TRS . J 2 CL B 1 110 1 CL CL . K 3 NI B 1 111 3 NI NI . L 7 HOH A 1 113 2 HOH HOH . L 7 HOH A 2 114 6 HOH HOH . L 7 HOH A 3 115 115 HOH HOH . L 7 HOH A 4 116 7 HOH HOH . L 7 HOH A 5 117 117 HOH HOH . L 7 HOH A 6 118 118 HOH HOH . L 7 HOH A 7 119 8 HOH HOH . L 7 HOH A 8 120 11 HOH HOH . L 7 HOH A 9 121 13 HOH HOH . L 7 HOH A 10 122 14 HOH HOH . L 7 HOH A 11 123 123 HOH HOH . L 7 HOH A 12 124 21 HOH HOH . L 7 HOH A 13 125 26 HOH HOH . L 7 HOH A 14 126 126 HOH HOH . L 7 HOH A 15 127 27 HOH HOH . L 7 HOH A 16 128 30 HOH HOH . L 7 HOH A 17 129 32 HOH HOH . L 7 HOH A 18 130 34 HOH HOH . L 7 HOH A 19 131 131 HOH HOH . L 7 HOH A 20 132 36 HOH HOH . L 7 HOH A 21 133 133 HOH HOH . L 7 HOH A 22 134 37 HOH HOH . L 7 HOH A 23 135 135 HOH HOH . L 7 HOH A 24 136 41 HOH HOH . L 7 HOH A 25 137 137 HOH HOH . L 7 HOH A 26 138 138 HOH HOH . L 7 HOH A 27 139 139 HOH HOH . L 7 HOH A 28 140 140 HOH HOH . L 7 HOH A 29 141 141 HOH HOH . L 7 HOH A 30 142 142 HOH HOH . L 7 HOH A 31 143 143 HOH HOH . L 7 HOH A 32 144 144 HOH HOH . L 7 HOH A 33 145 45 HOH HOH . L 7 HOH A 34 146 146 HOH HOH . L 7 HOH A 35 147 46 HOH HOH . L 7 HOH A 36 148 47 HOH HOH . L 7 HOH A 37 149 49 HOH HOH . L 7 HOH A 38 150 51 HOH HOH . L 7 HOH A 39 151 151 HOH HOH . L 7 HOH A 40 152 152 HOH HOH . L 7 HOH A 41 153 153 HOH HOH . L 7 HOH A 42 154 154 HOH HOH . L 7 HOH A 43 155 52 HOH HOH . L 7 HOH A 44 156 53 HOH HOH . L 7 HOH A 45 157 54 HOH HOH . L 7 HOH A 46 158 55 HOH HOH . L 7 HOH A 47 159 57 HOH HOH . L 7 HOH A 48 160 160 HOH HOH . L 7 HOH A 49 161 161 HOH HOH . L 7 HOH A 50 162 58 HOH HOH . L 7 HOH A 51 163 163 HOH HOH . L 7 HOH A 52 164 164 HOH HOH . L 7 HOH A 53 165 59 HOH HOH . L 7 HOH A 54 166 166 HOH HOH . L 7 HOH A 55 167 60 HOH HOH . L 7 HOH A 56 168 61 HOH HOH . L 7 HOH A 57 169 62 HOH HOH . L 7 HOH A 58 170 64 HOH HOH . L 7 HOH A 59 171 67 HOH HOH . L 7 HOH A 60 172 68 HOH HOH . L 7 HOH A 61 173 70 HOH HOH . L 7 HOH A 62 174 73 HOH HOH . L 7 HOH A 63 175 75 HOH HOH . L 7 HOH A 64 176 83 HOH HOH . L 7 HOH A 65 177 84 HOH HOH . L 7 HOH A 66 178 85 HOH HOH . L 7 HOH A 67 179 86 HOH HOH . L 7 HOH A 68 180 87 HOH HOH . L 7 HOH A 69 181 89 HOH HOH . L 7 HOH A 70 182 91 HOH HOH . L 7 HOH A 71 183 93 HOH HOH . L 7 HOH A 72 184 94 HOH HOH . L 7 HOH A 73 185 97 HOH HOH . L 7 HOH A 74 186 100 HOH HOH . L 7 HOH A 75 187 101 HOH HOH . L 7 HOH A 76 188 107 HOH HOH . L 7 HOH A 77 189 108 HOH HOH . L 7 HOH A 78 190 110 HOH HOH . L 7 HOH A 79 191 112 HOH HOH . M 7 HOH B 1 112 1 HOH HOH . M 7 HOH B 2 113 113 HOH HOH . M 7 HOH B 3 114 114 HOH HOH . M 7 HOH B 4 115 3 HOH HOH . M 7 HOH B 5 116 116 HOH HOH . M 7 HOH B 6 117 4 HOH HOH . M 7 HOH B 7 118 5 HOH HOH . M 7 HOH B 8 119 119 HOH HOH . M 7 HOH B 9 120 120 HOH HOH . M 7 HOH B 10 121 121 HOH HOH . M 7 HOH B 11 122 122 HOH HOH . M 7 HOH B 12 123 9 HOH HOH . M 7 HOH B 13 124 124 HOH HOH . M 7 HOH B 14 125 125 HOH HOH . M 7 HOH B 15 126 10 HOH HOH . M 7 HOH B 16 127 127 HOH HOH . M 7 HOH B 17 128 128 HOH HOH . M 7 HOH B 18 129 129 HOH HOH . M 7 HOH B 19 130 130 HOH HOH . M 7 HOH B 20 131 12 HOH HOH . M 7 HOH B 21 132 132 HOH HOH . M 7 HOH B 22 133 15 HOH HOH . M 7 HOH B 23 134 134 HOH HOH . M 7 HOH B 24 135 16 HOH HOH . M 7 HOH B 25 136 136 HOH HOH . M 7 HOH B 26 137 17 HOH HOH . M 7 HOH B 27 138 18 HOH HOH . M 7 HOH B 28 139 19 HOH HOH . M 7 HOH B 29 140 20 HOH HOH . M 7 HOH B 30 141 22 HOH HOH . M 7 HOH B 31 142 23 HOH HOH . M 7 HOH B 32 143 24 HOH HOH . M 7 HOH B 33 144 25 HOH HOH . M 7 HOH B 34 145 145 HOH HOH . M 7 HOH B 35 146 28 HOH HOH . M 7 HOH B 36 147 147 HOH HOH . M 7 HOH B 37 148 148 HOH HOH . M 7 HOH B 38 149 149 HOH HOH . M 7 HOH B 39 150 150 HOH HOH . M 7 HOH B 40 151 29 HOH HOH . M 7 HOH B 41 152 31 HOH HOH . M 7 HOH B 42 153 33 HOH HOH . M 7 HOH B 43 154 35 HOH HOH . M 7 HOH B 44 155 155 HOH HOH . M 7 HOH B 45 156 156 HOH HOH . M 7 HOH B 46 157 157 HOH HOH . M 7 HOH B 47 158 158 HOH HOH . M 7 HOH B 48 159 159 HOH HOH . M 7 HOH B 49 160 38 HOH HOH . M 7 HOH B 50 161 39 HOH HOH . M 7 HOH B 51 162 162 HOH HOH . M 7 HOH B 52 163 40 HOH HOH . M 7 HOH B 53 164 42 HOH HOH . M 7 HOH B 54 165 165 HOH HOH . M 7 HOH B 55 166 43 HOH HOH . M 7 HOH B 56 167 167 HOH HOH . M 7 HOH B 57 168 168 HOH HOH . M 7 HOH B 58 169 44 HOH HOH . M 7 HOH B 59 170 48 HOH HOH . M 7 HOH B 60 171 50 HOH HOH . M 7 HOH B 61 172 56 HOH HOH . M 7 HOH B 62 173 63 HOH HOH . M 7 HOH B 63 174 65 HOH HOH . M 7 HOH B 64 175 66 HOH HOH . M 7 HOH B 65 176 69 HOH HOH . M 7 HOH B 66 177 71 HOH HOH . M 7 HOH B 67 178 72 HOH HOH . M 7 HOH B 68 179 74 HOH HOH . M 7 HOH B 69 180 76 HOH HOH . M 7 HOH B 70 181 77 HOH HOH . M 7 HOH B 71 182 78 HOH HOH . M 7 HOH B 72 183 79 HOH HOH . M 7 HOH B 73 184 80 HOH HOH . M 7 HOH B 74 185 81 HOH HOH . M 7 HOH B 75 186 82 HOH HOH . M 7 HOH B 76 187 88 HOH HOH . M 7 HOH B 77 188 90 HOH HOH . M 7 HOH B 78 189 92 HOH HOH . M 7 HOH B 79 190 95 HOH HOH . M 7 HOH B 80 191 96 HOH HOH . M 7 HOH B 81 192 98 HOH HOH . M 7 HOH B 82 193 99 HOH HOH . M 7 HOH B 83 194 102 HOH HOH . M 7 HOH B 84 195 103 HOH HOH . M 7 HOH B 85 196 104 HOH HOH . M 7 HOH B 86 197 105 HOH HOH . M 7 HOH B 87 198 106 HOH HOH . M 7 HOH B 88 199 109 HOH HOH . M 7 HOH B 89 200 111 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 8.968 _atom_site.Cartn_y 9.925 _atom_site.Cartn_z 31.037 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 110 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #