data_3IWR
#
_model_server_result.job_id            tUBuxd-6WDEmx0UtuJCHTQ 
_model_server_result.datetime_utc      '2024-10-20 19:33:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3iwr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":341}' 
#
_entry.id    3IWR 
#
_exptl.entry_id    3IWR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3IWR 
_cell.length_a            117.082 
_cell.length_b            117.082 
_cell.length_c            77.971 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IWR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 79 A CYS 110 1_555 A SG CYS 141 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf2 A SG CYS 153 A CYS 184 1_555 A SG CYS 161 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 A SG CYS 260 A CYS 291 1_555 A SG CYS 292 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 79 B CYS 110 1_555 B SG CYS 141 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
disulf ? disulf5 B SG CYS 153 B CYS 184 1_555 B SG CYS 161 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf6 B SG CYS 260 B CYS 291 1_555 B SG CYS 292 B CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 262 n n 
C1 H11 MPD sing 263 n n 
C1 H12 MPD sing 264 n n 
C1 H13 MPD sing 265 n n 
C2 O2 MPD sing 266 n n 
C2 CM MPD sing 267 n n 
C2 C3 MPD sing 268 n n 
O2 HO2 MPD sing 269 n n 
CM HM1 MPD sing 270 n n 
CM HM2 MPD sing 271 n n 
CM HM3 MPD sing 272 n n 
C3 C4 MPD sing 273 n n 
C3 H31 MPD sing 274 n n 
C3 H32 MPD sing 275 n n 
C4 O4 MPD sing 276 n n 
C4 C5 MPD sing 277 n n 
C4 H4 MPD sing 278 n n 
O4 HO4 MPD sing 279 n n 
C5 H51 MPD sing 280 n n 
C5 H52 MPD sing 281 n n 
C5 H53 MPD sing 282 n n 
#
_atom_sites.entry_id                     3IWR 
_atom_sites.fract_transf_matrix[1][1]    0.008541 
_atom_sites.fract_transf_matrix[1][2]    0.004931 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009862 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012825 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MES A 1 1 1 MES MES . 
D 3 MPD A 1 341 1 MPD MPD . 
E 2 MES B 1 2 2 MES MES . 
F 3 MPD B 1 341 2 MPD MPD . 
G 4 HOH A 1 2 2 HOH HOH . 
G 4 HOH A 2 15 15 HOH HOH . 
G 4 HOH A 3 16 16 HOH HOH . 
G 4 HOH A 4 18 18 HOH HOH . 
G 4 HOH A 5 22 22 HOH HOH . 
G 4 HOH A 6 23 23 HOH HOH . 
G 4 HOH A 7 28 28 HOH HOH . 
G 4 HOH A 8 29 29 HOH HOH . 
G 4 HOH A 9 30 30 HOH HOH . 
G 4 HOH A 10 31 31 HOH HOH . 
G 4 HOH A 11 342 32 HOH HOH . 
G 4 HOH A 12 343 33 HOH HOH . 
G 4 HOH A 13 344 34 HOH HOH . 
G 4 HOH A 14 345 38 HOH HOH . 
G 4 HOH A 15 346 39 HOH HOH . 
G 4 HOH A 16 347 42 HOH HOH . 
G 4 HOH A 17 348 44 HOH HOH . 
G 4 HOH A 18 349 46 HOH HOH . 
G 4 HOH A 19 350 49 HOH HOH . 
G 4 HOH A 20 351 51 HOH HOH . 
G 4 HOH A 21 352 52 HOH HOH . 
G 4 HOH A 22 353 53 HOH HOH . 
G 4 HOH A 23 354 56 HOH HOH . 
G 4 HOH A 24 355 59 HOH HOH . 
G 4 HOH A 25 356 62 HOH HOH . 
G 4 HOH A 26 357 69 HOH HOH . 
G 4 HOH A 27 358 74 HOH HOH . 
G 4 HOH A 28 359 78 HOH HOH . 
G 4 HOH A 29 360 79 HOH HOH . 
G 4 HOH A 30 361 80 HOH HOH . 
G 4 HOH A 31 362 81 HOH HOH . 
G 4 HOH A 32 363 82 HOH HOH . 
G 4 HOH A 33 364 83 HOH HOH . 
G 4 HOH A 34 365 84 HOH HOH . 
G 4 HOH A 35 366 85 HOH HOH . 
G 4 HOH A 36 367 86 HOH HOH . 
G 4 HOH A 37 368 89 HOH HOH . 
G 4 HOH A 38 369 90 HOH HOH . 
G 4 HOH A 39 370 94 HOH HOH . 
G 4 HOH A 40 371 96 HOH HOH . 
G 4 HOH A 41 372 98 HOH HOH . 
G 4 HOH A 42 373 99 HOH HOH . 
G 4 HOH A 43 374 101 HOH HOH . 
G 4 HOH A 44 375 103 HOH HOH . 
G 4 HOH A 45 376 110 HOH HOH . 
G 4 HOH A 46 377 113 HOH HOH . 
G 4 HOH A 47 378 118 HOH HOH . 
G 4 HOH A 48 379 119 HOH HOH . 
G 4 HOH A 49 380 121 HOH HOH . 
H 4 HOH B 1 1 1 HOH HOH . 
H 4 HOH B 2 3 3 HOH HOH . 
H 4 HOH B 3 4 4 HOH HOH . 
H 4 HOH B 4 5 5 HOH HOH . 
H 4 HOH B 5 6 6 HOH HOH . 
H 4 HOH B 6 7 7 HOH HOH . 
H 4 HOH B 7 8 8 HOH HOH . 
H 4 HOH B 8 9 9 HOH HOH . 
H 4 HOH B 9 10 10 HOH HOH . 
H 4 HOH B 10 11 11 HOH HOH . 
H 4 HOH B 11 12 12 HOH HOH . 
H 4 HOH B 12 13 13 HOH HOH . 
H 4 HOH B 13 14 14 HOH HOH . 
H 4 HOH B 14 17 17 HOH HOH . 
H 4 HOH B 15 19 19 HOH HOH . 
H 4 HOH B 16 20 20 HOH HOH . 
H 4 HOH B 17 21 21 HOH HOH . 
H 4 HOH B 18 24 24 HOH HOH . 
H 4 HOH B 19 25 25 HOH HOH . 
H 4 HOH B 20 26 26 HOH HOH . 
H 4 HOH B 21 27 27 HOH HOH . 
H 4 HOH B 22 342 35 HOH HOH . 
H 4 HOH B 23 343 36 HOH HOH . 
H 4 HOH B 24 344 37 HOH HOH . 
H 4 HOH B 25 345 40 HOH HOH . 
H 4 HOH B 26 346 41 HOH HOH . 
H 4 HOH B 27 347 43 HOH HOH . 
H 4 HOH B 28 348 45 HOH HOH . 
H 4 HOH B 29 349 47 HOH HOH . 
H 4 HOH B 30 350 48 HOH HOH . 
H 4 HOH B 31 351 50 HOH HOH . 
H 4 HOH B 32 352 54 HOH HOH . 
H 4 HOH B 33 353 55 HOH HOH . 
H 4 HOH B 34 354 57 HOH HOH . 
H 4 HOH B 35 355 58 HOH HOH . 
H 4 HOH B 36 356 60 HOH HOH . 
H 4 HOH B 37 357 61 HOH HOH . 
H 4 HOH B 38 358 63 HOH HOH . 
H 4 HOH B 39 359 64 HOH HOH . 
H 4 HOH B 40 360 65 HOH HOH . 
H 4 HOH B 41 361 66 HOH HOH . 
H 4 HOH B 42 362 67 HOH HOH . 
H 4 HOH B 43 363 68 HOH HOH . 
H 4 HOH B 44 364 70 HOH HOH . 
H 4 HOH B 45 365 71 HOH HOH . 
H 4 HOH B 46 366 72 HOH HOH . 
H 4 HOH B 47 367 73 HOH HOH . 
H 4 HOH B 48 368 75 HOH HOH . 
H 4 HOH B 49 369 76 HOH HOH . 
H 4 HOH B 50 370 77 HOH HOH . 
H 4 HOH B 51 371 87 HOH HOH . 
H 4 HOH B 52 372 88 HOH HOH . 
H 4 HOH B 53 373 91 HOH HOH . 
H 4 HOH B 54 374 92 HOH HOH . 
H 4 HOH B 55 375 93 HOH HOH . 
H 4 HOH B 56 376 95 HOH HOH . 
H 4 HOH B 57 377 97 HOH HOH . 
H 4 HOH B 58 378 100 HOH HOH . 
H 4 HOH B 59 379 102 HOH HOH . 
H 4 HOH B 60 380 104 HOH HOH . 
H 4 HOH B 61 381 105 HOH HOH . 
H 4 HOH B 62 382 106 HOH HOH . 
H 4 HOH B 63 383 107 HOH HOH . 
H 4 HOH B 64 384 108 HOH HOH . 
H 4 HOH B 65 385 109 HOH HOH . 
H 4 HOH B 66 386 111 HOH HOH . 
H 4 HOH B 67 387 112 HOH HOH . 
H 4 HOH B 68 388 114 HOH HOH . 
H 4 HOH B 69 389 115 HOH HOH . 
H 4 HOH B 70 390 116 HOH HOH . 
H 4 HOH B 71 391 117 HOH HOH . 
H 4 HOH B 72 392 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . F 3 48.363 82.647 24.122 1 38.81 ? C1 MPD 341 B 1 
HETATM 2 C C2 MPD . . . F 3 48.71 83.254 25.479 1 41.55 ? C2 MPD 341 B 1 
HETATM 3 O O2 MPD . . . F 3 48.43 82.263 26.487 1 42.5 ? O2 MPD 341 B 1 
HETATM 4 C CM MPD . . . F 3 50.202 83.59 25.568 1 40.84 ? CM MPD 341 B 1 
HETATM 5 C C3 MPD . . . F 3 47.815 84.447 25.839 1 41.45 ? C3 MPD 341 B 1 
HETATM 6 C C4 MPD . . . F 3 48.205 85.752 25.12 1 42.15 ? C4 MPD 341 B 1 
HETATM 7 O O4 MPD . . . F 3 47.39 85.951 23.969 1 39.81 ? O4 MPD 341 B 1 
HETATM 8 C C5 MPD . . . F 3 48.13 86.94 26.099 1 41.4 ? C5 MPD 341 B 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#