data_3IWX # _model_server_result.job_id aS_E11DyEhVN3FiRVT1f-A _model_server_result.datetime_utc '2024-11-24 09:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iwx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":69}' # _entry.id 3IWX # _exptl.entry_id 3IWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.045 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cisplatin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IWX _cell.length_a 78.289 _cell.length_b 78.289 _cell.length_c 54.335 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 12 A CYS 12 1_555 C PT1 CPT . A CPT 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc2 A SG CYS 15 A CYS 15 1_555 C PT1 CPT . A CPT 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 C PT1 CPT . A CPT 69 1_555 B SG CYS 12 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc4 C PT1 CPT . A CPT 69 1_555 B SG CYS 15 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? # _chem_comp.formula 'Cl2 H6 N2 Pt' _chem_comp.formula_weight 300.045 _chem_comp.id CPT _chem_comp.mon_nstd_flag . _chem_comp.name Cisplatin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms diammine(dichloro)platinum # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PT1 N1 CPT sing 70 n n PT1 N2 CPT sing 71 n n N1 H11 CPT sing 72 n n N1 H12 CPT sing 73 n n N1 H13 CPT sing 74 n n N2 H21 CPT sing 75 n n N2 H22 CPT sing 76 n n N2 H23 CPT sing 77 n n CL2 PT1 CPT sing 78 n n CL1 PT1 CPT sing 79 n n # _atom_sites.entry_id 3IWX _atom_sites.fract_transf_matrix[1][1] 0.012773 _atom_sites.fract_transf_matrix[1][2] 0.007375 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CPT A 1 69 69 CPT CPT . D 3 SO4 A 1 71 71 SO4 SO4 . E 3 SO4 B 1 70 70 SO4 SO4 . F 3 SO4 B 1 71 71 SO4 SO4 . G 4 HOH A 1 72 72 HOH HOH . G 4 HOH A 2 73 73 HOH HOH . G 4 HOH A 3 74 74 HOH HOH . G 4 HOH A 4 75 75 HOH HOH . G 4 HOH A 5 76 76 HOH HOH . G 4 HOH A 6 77 77 HOH HOH . G 4 HOH A 7 78 78 HOH HOH . G 4 HOH A 8 79 79 HOH HOH . G 4 HOH A 9 80 80 HOH HOH . G 4 HOH A 10 81 81 HOH HOH . G 4 HOH A 11 82 82 HOH HOH . G 4 HOH A 12 83 83 HOH HOH . G 4 HOH A 13 84 84 HOH HOH . G 4 HOH A 14 85 85 HOH HOH . G 4 HOH A 15 86 86 HOH HOH . G 4 HOH A 16 87 87 HOH HOH . G 4 HOH A 17 88 88 HOH HOH . G 4 HOH A 18 89 89 HOH HOH . G 4 HOH A 19 90 90 HOH HOH . G 4 HOH A 20 91 91 HOH HOH . G 4 HOH A 21 92 92 HOH HOH . G 4 HOH A 22 93 93 HOH HOH . G 4 HOH A 23 94 94 HOH HOH . G 4 HOH A 24 95 95 HOH HOH . G 4 HOH A 25 96 96 HOH HOH . G 4 HOH A 26 97 97 HOH HOH . G 4 HOH A 27 98 98 HOH HOH . G 4 HOH A 28 99 99 HOH HOH . G 4 HOH A 29 100 100 HOH HOH . G 4 HOH A 30 101 101 HOH HOH . G 4 HOH A 31 102 102 HOH HOH . G 4 HOH A 32 103 103 HOH HOH . G 4 HOH A 33 104 104 HOH HOH . G 4 HOH A 34 105 105 HOH HOH . G 4 HOH A 35 106 106 HOH HOH . G 4 HOH A 36 107 107 HOH HOH . G 4 HOH A 37 108 108 HOH HOH . G 4 HOH A 38 109 109 HOH HOH . G 4 HOH A 39 110 110 HOH HOH . G 4 HOH A 40 111 111 HOH HOH . G 4 HOH A 41 112 112 HOH HOH . G 4 HOH A 42 113 113 HOH HOH . H 4 HOH B 1 72 72 HOH HOH . H 4 HOH B 2 73 73 HOH HOH . H 4 HOH B 3 74 74 HOH HOH . H 4 HOH B 4 75 75 HOH HOH . H 4 HOH B 5 76 76 HOH HOH . H 4 HOH B 6 77 77 HOH HOH . H 4 HOH B 7 78 78 HOH HOH . H 4 HOH B 8 79 79 HOH HOH . H 4 HOH B 9 80 80 HOH HOH . H 4 HOH B 10 81 81 HOH HOH . H 4 HOH B 11 82 82 HOH HOH . H 4 HOH B 12 83 83 HOH HOH . H 4 HOH B 13 84 84 HOH HOH . H 4 HOH B 14 85 85 HOH HOH . H 4 HOH B 15 86 86 HOH HOH . H 4 HOH B 16 87 87 HOH HOH . H 4 HOH B 17 88 88 HOH HOH . H 4 HOH B 18 89 89 HOH HOH . H 4 HOH B 19 90 90 HOH HOH . H 4 HOH B 20 91 91 HOH HOH . H 4 HOH B 21 92 92 HOH HOH . H 4 HOH B 22 93 93 HOH HOH . H 4 HOH B 23 94 94 HOH HOH . H 4 HOH B 24 95 95 HOH HOH . H 4 HOH B 25 96 96 HOH HOH . H 4 HOH B 26 97 97 HOH HOH . H 4 HOH B 27 98 98 HOH HOH . H 4 HOH B 28 99 99 HOH HOH . H 4 HOH B 29 100 100 HOH HOH . H 4 HOH B 30 101 101 HOH HOH . H 4 HOH B 31 102 102 HOH HOH . H 4 HOH B 32 103 103 HOH HOH . H 4 HOH B 33 104 104 HOH HOH . H 4 HOH B 34 105 105 HOH HOH . H 4 HOH B 35 106 106 HOH HOH . H 4 HOH B 36 107 107 HOH HOH . H 4 HOH B 37 108 108 HOH HOH . H 4 HOH B 38 109 109 HOH HOH . H 4 HOH B 39 110 110 HOH HOH . H 4 HOH B 40 111 111 HOH HOH . H 4 HOH B 41 112 112 HOH HOH . H 4 HOH B 42 113 113 HOH HOH . H 4 HOH B 43 114 114 HOH HOH . H 4 HOH B 44 115 115 HOH HOH . H 4 HOH B 45 116 116 HOH HOH . H 4 HOH B 46 117 117 HOH HOH . H 4 HOH B 47 118 118 HOH HOH . H 4 HOH B 48 119 119 HOH HOH . H 4 HOH B 49 120 120 HOH HOH . H 4 HOH B 50 121 121 HOH HOH . H 4 HOH B 51 122 122 HOH HOH . H 4 HOH B 52 123 123 HOH HOH . H 4 HOH B 53 124 124 HOH HOH . H 4 HOH B 54 125 125 HOH HOH . H 4 HOH B 55 126 126 HOH HOH . H 4 HOH B 56 127 127 HOH HOH . H 4 HOH B 57 128 128 HOH HOH . H 4 HOH B 58 129 129 HOH HOH . H 4 HOH B 59 130 130 HOH HOH . H 4 HOH B 60 131 131 HOH HOH . H 4 HOH B 61 132 132 HOH HOH . H 4 HOH B 62 133 133 HOH HOH . H 4 HOH B 63 134 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 PT PT1 CPT . . . C 2 24.318 -16.373 1.065 0.4 37.23 ? PT1 CPT 69 A 1 HETATM 2 N N1 CPT . . . C 2 22.444 -16.167 0.426 0.4 64.07 ? N1 CPT 69 A 1 HETATM 3 N N2 CPT . . . C 2 24.451 -18.136 1.399 0.4 63.86 ? N2 CPT 69 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #