data_3IX1
#
_model_server_result.job_id            1vK41DB-698lzVRyMMgkxA 
_model_server_result.datetime_utc      '2024-12-26 21:43:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ix1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    3IX1 
#
_exptl.entry_id    3IX1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              166.18 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(4-amino-2-methylpyrimidin-5-yl)methyl]formamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IX1 
_cell.length_a            59.918 
_cell.length_b            96.953 
_cell.length_c            104.888 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IX1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,E 2 1 
B,D,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C7 H10 N4 O' 
_chem_comp.formula_weight    166.18 
_chem_comp.id                NFM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(4-amino-2-methylpyrimidin-5-yl)methyl]formamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 NFM doub 224 n y 
N3 C1 NFM sing 225 n n 
C1 C4 NFM sing 226 n y 
N1 C2 NFM sing 227 n y 
C7 O1 NFM doub 228 n n 
C5 C2 NFM sing 229 n n 
C2 N2 NFM doub 230 n y 
N2 C3 NFM sing 231 n y 
C4 C3 NFM doub 232 n y 
C3 H3 NFM sing 233 n n 
N3 HN3 NFM sing 234 n n 
N3 HN3A NFM sing 235 n n 
C4 C6 NFM sing 236 n n 
N4 C6 NFM sing 237 n n 
N4 C7 NFM sing 238 n n 
N4 HN4 NFM sing 239 n n 
C5 H5 NFM sing 240 n n 
C5 H5A NFM sing 241 n n 
C5 H5B NFM sing 242 n n 
C6 H6 NFM sing 243 n n 
C6 H6A NFM sing 244 n n 
C7 H7 NFM sing 245 n n 
#
_atom_sites.entry_id                     3IX1 
_atom_sites.fract_transf_matrix[1][1]    0.016689 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010314 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009534 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NFM A 1 401 401 NFM NFM . 
D 2 NFM B 1 401 401 NFM NFM . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 3 3 HOH HOH . 
E 3 HOH A 3 4 4 HOH HOH . 
E 3 HOH A 4 5 5 HOH HOH . 
E 3 HOH A 5 6 6 HOH HOH . 
E 3 HOH A 6 12 12 HOH HOH . 
E 3 HOH A 7 15 15 HOH HOH . 
E 3 HOH A 8 19 19 HOH HOH . 
E 3 HOH A 9 25 25 HOH HOH . 
E 3 HOH A 10 28 28 HOH HOH . 
E 3 HOH A 11 331 35 HOH HOH . 
E 3 HOH A 12 332 332 HOH HOH . 
E 3 HOH A 13 333 36 HOH HOH . 
E 3 HOH A 14 334 47 HOH HOH . 
E 3 HOH A 15 335 48 HOH HOH . 
E 3 HOH A 16 336 50 HOH HOH . 
E 3 HOH A 17 337 51 HOH HOH . 
E 3 HOH A 18 338 55 HOH HOH . 
E 3 HOH A 19 339 59 HOH HOH . 
E 3 HOH A 20 340 61 HOH HOH . 
E 3 HOH A 21 341 67 HOH HOH . 
E 3 HOH A 22 342 68 HOH HOH . 
E 3 HOH A 23 343 70 HOH HOH . 
E 3 HOH A 24 344 74 HOH HOH . 
E 3 HOH A 25 345 76 HOH HOH . 
E 3 HOH A 26 346 77 HOH HOH . 
E 3 HOH A 27 347 78 HOH HOH . 
E 3 HOH A 28 348 348 HOH HOH . 
E 3 HOH A 29 349 80 HOH HOH . 
E 3 HOH A 30 350 350 HOH HOH . 
E 3 HOH A 31 351 81 HOH HOH . 
E 3 HOH A 32 352 82 HOH HOH . 
E 3 HOH A 33 353 83 HOH HOH . 
E 3 HOH A 34 354 87 HOH HOH . 
E 3 HOH A 35 355 88 HOH HOH . 
E 3 HOH A 36 356 90 HOH HOH . 
E 3 HOH A 37 357 96 HOH HOH . 
E 3 HOH A 38 358 97 HOH HOH . 
E 3 HOH A 39 359 359 HOH HOH . 
E 3 HOH A 40 360 360 HOH HOH . 
E 3 HOH A 41 361 109 HOH HOH . 
E 3 HOH A 42 362 114 HOH HOH . 
E 3 HOH A 43 363 116 HOH HOH . 
E 3 HOH A 44 364 364 HOH HOH . 
E 3 HOH A 45 365 365 HOH HOH . 
E 3 HOH A 46 366 121 HOH HOH . 
E 3 HOH A 47 367 123 HOH HOH . 
E 3 HOH A 48 368 126 HOH HOH . 
E 3 HOH A 49 369 369 HOH HOH . 
E 3 HOH A 50 370 132 HOH HOH . 
E 3 HOH A 51 371 138 HOH HOH . 
E 3 HOH A 52 372 143 HOH HOH . 
E 3 HOH A 53 373 146 HOH HOH . 
E 3 HOH A 54 374 148 HOH HOH . 
E 3 HOH A 55 375 152 HOH HOH . 
E 3 HOH A 56 376 376 HOH HOH . 
E 3 HOH A 57 377 154 HOH HOH . 
E 3 HOH A 58 378 167 HOH HOH . 
E 3 HOH A 59 379 168 HOH HOH . 
E 3 HOH A 60 380 174 HOH HOH . 
E 3 HOH A 61 381 175 HOH HOH . 
E 3 HOH A 62 382 176 HOH HOH . 
E 3 HOH A 63 383 177 HOH HOH . 
E 3 HOH A 64 384 182 HOH HOH . 
E 3 HOH A 65 385 184 HOH HOH . 
E 3 HOH A 66 386 188 HOH HOH . 
E 3 HOH A 67 387 189 HOH HOH . 
E 3 HOH A 68 388 199 HOH HOH . 
E 3 HOH A 69 389 202 HOH HOH . 
E 3 HOH A 70 390 216 HOH HOH . 
E 3 HOH A 71 391 219 HOH HOH . 
E 3 HOH A 72 392 220 HOH HOH . 
E 3 HOH A 73 393 235 HOH HOH . 
E 3 HOH A 74 394 241 HOH HOH . 
E 3 HOH A 75 395 395 HOH HOH . 
E 3 HOH A 76 396 246 HOH HOH . 
E 3 HOH A 77 397 250 HOH HOH . 
E 3 HOH A 78 398 254 HOH HOH . 
E 3 HOH A 79 399 255 HOH HOH . 
E 3 HOH A 80 400 258 HOH HOH . 
E 3 HOH A 81 402 261 HOH HOH . 
E 3 HOH A 82 403 267 HOH HOH . 
E 3 HOH A 83 404 270 HOH HOH . 
E 3 HOH A 84 405 276 HOH HOH . 
E 3 HOH A 85 406 280 HOH HOH . 
E 3 HOH A 86 407 281 HOH HOH . 
E 3 HOH A 87 408 408 HOH HOH . 
E 3 HOH A 88 409 285 HOH HOH . 
E 3 HOH A 89 410 287 HOH HOH . 
E 3 HOH A 90 411 294 HOH HOH . 
E 3 HOH A 91 412 295 HOH HOH . 
E 3 HOH A 92 413 413 HOH HOH . 
E 3 HOH A 93 414 414 HOH HOH . 
E 3 HOH A 94 415 313 HOH HOH . 
E 3 HOH A 95 416 320 HOH HOH . 
E 3 HOH A 96 417 30 HOH HOH . 
E 3 HOH A 97 420 420 HOH HOH . 
E 3 HOH A 98 425 425 HOH HOH . 
E 3 HOH A 99 430 430 HOH HOH . 
E 3 HOH A 100 444 444 HOH HOH . 
E 3 HOH A 101 456 456 HOH HOH . 
E 3 HOH A 102 457 457 HOH HOH . 
E 3 HOH A 103 458 458 HOH HOH . 
E 3 HOH A 104 459 459 HOH HOH . 
E 3 HOH A 105 468 468 HOH HOH . 
E 3 HOH A 106 469 469 HOH HOH . 
E 3 HOH A 107 470 470 HOH HOH . 
E 3 HOH A 108 471 471 HOH HOH . 
E 3 HOH A 109 472 472 HOH HOH . 
E 3 HOH A 110 475 475 HOH HOH . 
E 3 HOH A 111 479 479 HOH HOH . 
E 3 HOH A 112 481 481 HOH HOH . 
E 3 HOH A 113 482 482 HOH HOH . 
E 3 HOH A 114 483 483 HOH HOH . 
E 3 HOH A 115 484 484 HOH HOH . 
E 3 HOH A 116 485 485 HOH HOH . 
E 3 HOH A 117 486 486 HOH HOH . 
E 3 HOH A 118 487 487 HOH HOH . 
E 3 HOH A 119 489 489 HOH HOH . 
E 3 HOH A 120 490 490 HOH HOH . 
E 3 HOH A 121 491 491 HOH HOH . 
E 3 HOH A 122 493 493 HOH HOH . 
E 3 HOH A 123 494 494 HOH HOH . 
E 3 HOH A 124 495 495 HOH HOH . 
E 3 HOH A 125 496 496 HOH HOH . 
E 3 HOH A 126 497 497 HOH HOH . 
E 3 HOH A 127 499 499 HOH HOH . 
E 3 HOH A 128 500 500 HOH HOH . 
F 3 HOH B 1 2 2 HOH HOH . 
F 3 HOH B 2 8 8 HOH HOH . 
F 3 HOH B 3 9 9 HOH HOH . 
F 3 HOH B 4 10 10 HOH HOH . 
F 3 HOH B 5 11 11 HOH HOH . 
F 3 HOH B 6 14 14 HOH HOH . 
F 3 HOH B 7 16 16 HOH HOH . 
F 3 HOH B 8 18 18 HOH HOH . 
F 3 HOH B 9 21 21 HOH HOH . 
F 3 HOH B 10 24 24 HOH HOH . 
F 3 HOH B 11 27 27 HOH HOH . 
F 3 HOH B 12 331 32 HOH HOH . 
F 3 HOH B 13 332 33 HOH HOH . 
F 3 HOH B 14 333 34 HOH HOH . 
F 3 HOH B 15 334 39 HOH HOH . 
F 3 HOH B 16 335 40 HOH HOH . 
F 3 HOH B 17 336 49 HOH HOH . 
F 3 HOH B 18 337 52 HOH HOH . 
F 3 HOH B 19 338 53 HOH HOH . 
F 3 HOH B 20 339 54 HOH HOH . 
F 3 HOH B 21 340 340 HOH HOH . 
F 3 HOH B 22 341 57 HOH HOH . 
F 3 HOH B 23 342 58 HOH HOH . 
F 3 HOH B 24 343 60 HOH HOH . 
F 3 HOH B 25 344 62 HOH HOH . 
F 3 HOH B 26 345 63 HOH HOH . 
F 3 HOH B 27 346 69 HOH HOH . 
F 3 HOH B 28 347 347 HOH HOH . 
F 3 HOH B 29 348 72 HOH HOH . 
F 3 HOH B 30 349 75 HOH HOH . 
F 3 HOH B 31 350 86 HOH HOH . 
F 3 HOH B 32 351 89 HOH HOH . 
F 3 HOH B 33 352 94 HOH HOH . 
F 3 HOH B 34 353 99 HOH HOH . 
F 3 HOH B 35 354 101 HOH HOH . 
F 3 HOH B 36 355 103 HOH HOH . 
F 3 HOH B 37 356 104 HOH HOH . 
F 3 HOH B 38 357 357 HOH HOH . 
F 3 HOH B 39 358 105 HOH HOH . 
F 3 HOH B 40 359 106 HOH HOH . 
F 3 HOH B 41 360 111 HOH HOH . 
F 3 HOH B 42 361 112 HOH HOH . 
F 3 HOH B 43 362 119 HOH HOH . 
F 3 HOH B 44 363 124 HOH HOH . 
F 3 HOH B 45 364 128 HOH HOH . 
F 3 HOH B 46 365 129 HOH HOH . 
F 3 HOH B 47 366 133 HOH HOH . 
F 3 HOH B 48 367 134 HOH HOH . 
F 3 HOH B 49 368 137 HOH HOH . 
F 3 HOH B 50 369 140 HOH HOH . 
F 3 HOH B 51 370 370 HOH HOH . 
F 3 HOH B 52 371 141 HOH HOH . 
F 3 HOH B 53 372 142 HOH HOH . 
F 3 HOH B 54 373 373 HOH HOH . 
F 3 HOH B 55 374 149 HOH HOH . 
F 3 HOH B 56 375 150 HOH HOH . 
F 3 HOH B 57 376 153 HOH HOH . 
F 3 HOH B 58 377 156 HOH HOH . 
F 3 HOH B 59 378 159 HOH HOH . 
F 3 HOH B 60 379 163 HOH HOH . 
F 3 HOH B 61 380 169 HOH HOH . 
F 3 HOH B 62 381 381 HOH HOH . 
F 3 HOH B 63 382 171 HOH HOH . 
F 3 HOH B 64 383 173 HOH HOH . 
F 3 HOH B 65 384 179 HOH HOH . 
F 3 HOH B 66 385 180 HOH HOH . 
F 3 HOH B 67 386 181 HOH HOH . 
F 3 HOH B 68 387 183 HOH HOH . 
F 3 HOH B 69 388 185 HOH HOH . 
F 3 HOH B 70 389 192 HOH HOH . 
F 3 HOH B 71 390 195 HOH HOH . 
F 3 HOH B 72 391 196 HOH HOH . 
F 3 HOH B 73 392 198 HOH HOH . 
F 3 HOH B 74 393 200 HOH HOH . 
F 3 HOH B 75 394 203 HOH HOH . 
F 3 HOH B 76 395 204 HOH HOH . 
F 3 HOH B 77 396 211 HOH HOH . 
F 3 HOH B 78 397 212 HOH HOH . 
F 3 HOH B 79 398 213 HOH HOH . 
F 3 HOH B 80 399 221 HOH HOH . 
F 3 HOH B 81 400 226 HOH HOH . 
F 3 HOH B 82 402 234 HOH HOH . 
F 3 HOH B 83 403 238 HOH HOH . 
F 3 HOH B 84 404 242 HOH HOH . 
F 3 HOH B 85 405 248 HOH HOH . 
F 3 HOH B 86 406 253 HOH HOH . 
F 3 HOH B 87 407 259 HOH HOH . 
F 3 HOH B 88 408 262 HOH HOH . 
F 3 HOH B 89 409 409 HOH HOH . 
F 3 HOH B 90 410 263 HOH HOH . 
F 3 HOH B 91 411 264 HOH HOH . 
F 3 HOH B 92 412 412 HOH HOH . 
F 3 HOH B 93 413 268 HOH HOH . 
F 3 HOH B 94 414 272 HOH HOH . 
F 3 HOH B 95 415 415 HOH HOH . 
F 3 HOH B 96 416 274 HOH HOH . 
F 3 HOH B 97 417 417 HOH HOH . 
F 3 HOH B 98 418 275 HOH HOH . 
F 3 HOH B 99 419 284 HOH HOH . 
F 3 HOH B 100 420 296 HOH HOH . 
F 3 HOH B 101 421 421 HOH HOH . 
F 3 HOH B 102 422 303 HOH HOH . 
F 3 HOH B 103 423 304 HOH HOH . 
F 3 HOH B 104 424 424 HOH HOH . 
F 3 HOH B 105 425 308 HOH HOH . 
F 3 HOH B 106 426 326 HOH HOH . 
F 3 HOH B 107 427 330 HOH HOH . 
F 3 HOH B 108 439 439 HOH HOH . 
F 3 HOH B 109 443 443 HOH HOH . 
F 3 HOH B 110 450 450 HOH HOH . 
F 3 HOH B 111 451 451 HOH HOH . 
F 3 HOH B 112 452 452 HOH HOH . 
F 3 HOH B 113 453 453 HOH HOH . 
F 3 HOH B 114 454 454 HOH HOH . 
F 3 HOH B 115 460 460 HOH HOH . 
F 3 HOH B 116 461 461 HOH HOH . 
F 3 HOH B 117 462 462 HOH HOH . 
F 3 HOH B 118 463 463 HOH HOH . 
F 3 HOH B 119 464 464 HOH HOH . 
F 3 HOH B 120 465 465 HOH HOH . 
F 3 HOH B 121 466 466 HOH HOH . 
F 3 HOH B 122 467 467 HOH HOH . 
F 3 HOH B 123 473 473 HOH HOH . 
F 3 HOH B 124 474 474 HOH HOH . 
F 3 HOH B 125 476 476 HOH HOH . 
F 3 HOH B 126 477 477 HOH HOH . 
F 3 HOH B 127 478 478 HOH HOH . 
F 3 HOH B 128 480 480 HOH HOH . 
F 3 HOH B 129 488 488 HOH HOH . 
F 3 HOH B 130 492 492 HOH HOH . 
F 3 HOH B 131 498 498 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NFM . . . D 2 55.573 95.285 73.819 1 13.96 ? C1 NFM 401 B 1 
HETATM 2 N N1 NFM . . . D 2 55.875 96.339 74.721 1 14.66 ? N1 NFM 401 B 1 
HETATM 3 O O1 NFM . . . D 2 52.867 93.255 69.827 1 17.31 ? O1 NFM 401 B 1 
HETATM 4 C C2 NFM . . . D 2 55.592 97.677 74.378 1 12.29 ? C2 NFM 401 B 1 
HETATM 5 N N2 NFM . . . D 2 55.005 97.956 73.125 1 13.12 ? N2 NFM 401 B 1 
HETATM 6 C C3 NFM . . . D 2 54.705 96.908 72.225 1 13.43 ? C3 NFM 401 B 1 
HETATM 7 N N3 NFM . . . D 2 55.877 93.868 74.2 1 14.8 ? N3 NFM 401 B 1 
HETATM 8 C C4 NFM . . . D 2 54.988 95.568 72.568 1 15.14 ? C4 NFM 401 B 1 
HETATM 9 N N4 NFM . . . D 2 53.579 93.493 71.967 1 14.64 ? N4 NFM 401 B 1 
HETATM 10 C C5 NFM . . . D 2 55.911 98.79 75.331 1 9.7 ? C5 NFM 401 B 1 
HETATM 11 C C6 NFM . . . D 2 54.665 94.463 71.618 1 14.13 ? C6 NFM 401 B 1 
HETATM 12 C C7 NFM . . . D 2 52.746 92.959 70.995 1 16.38 ? C7 NFM 401 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#