data_3IXH # _model_server_result.job_id '_m90X1otJwxTSxfNl4nzMw' _model_server_result.datetime_utc '2024-10-10 17:12:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ixh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":362}' # _entry.id 3IXH # _exptl.entry_id 3IXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CEFOTAXIME,C3' cleaved,open,bound form" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.6 _cell.angle_gamma 90 _cell.entry_id 3IXH _cell.length_a 117.803 _cell.length_b 77.583 _cell.length_c 98.887 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,E 1 1 A,C,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H15 N5 O5 S2' _chem_comp.formula_weight 397.429 _chem_comp.id CEF _chem_comp.mon_nstd_flag . _chem_comp.name "CEFOTAXIME, C3' cleaved, open, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 CEF sing 70 n n S1 C6 CEF sing 71 n n C1 C2 CEF sing 72 n n C1 H1 CEF sing 73 n n C1 H2 CEF sing 74 n n C2 C3 CEF doub 75 n n C2 C4 CEF sing 76 n n C3 H3 CEF sing 77 n n C3 H4 CEF sing 78 n n C4 C5 CEF sing 79 n n C4 N1 CEF doub 80 n n C5 O1 CEF doub 81 n n C5 O2 CEF sing 82 n n O2 H5 CEF sing 83 n n N1 C6 CEF sing 84 n n C6 C7 CEF sing 85 n n C6 H6 CEF sing 86 n n C7 C8 CEF sing 87 n n C7 N2 CEF sing 88 n n C7 H7 CEF sing 89 n n C8 O3 CEF doub 90 n n C8 H8 CEF sing 91 n n N2 C9 CEF sing 92 n n N2 H9 CEF sing 93 n n C9 O4 CEF doub 94 n n C9 C10 CEF sing 95 n n C10 N3 CEF doub 96 z n C10 C12 CEF sing 97 n n N3 O5 CEF sing 98 n n O5 C11 CEF sing 99 n n C11 H10 CEF sing 100 n n C11 H11 CEF sing 101 n n C11 H12 CEF sing 102 n n C12 C13 CEF doub 103 n y C12 N5 CEF sing 104 n y C13 S2 CEF sing 105 n y C13 H13 CEF sing 106 n n S2 C14 CEF sing 107 n y C14 N4 CEF sing 108 n n C14 N5 CEF doub 109 n y N4 H14 CEF sing 110 n n N4 H15 CEF sing 111 n n # _atom_sites.entry_id 3IXH _atom_sites.fract_transf_matrix[1][1] 0.008489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CEF B 1 362 362 CEF PCZ . D 3 HOH B 1 1 1 HOH HOH . D 3 HOH B 2 3 3 HOH HOH . D 3 HOH B 3 363 363 HOH HOH . D 3 HOH B 4 364 364 HOH HOH . D 3 HOH B 5 365 365 HOH HOH . D 3 HOH B 6 366 366 HOH HOH . D 3 HOH B 7 367 367 HOH HOH . D 3 HOH B 8 368 368 HOH HOH . D 3 HOH B 9 369 369 HOH HOH . D 3 HOH B 10 370 370 HOH HOH . D 3 HOH B 11 371 371 HOH HOH . D 3 HOH B 12 372 372 HOH HOH . D 3 HOH B 13 373 373 HOH HOH . D 3 HOH B 14 374 374 HOH HOH . D 3 HOH B 15 375 375 HOH HOH . D 3 HOH B 16 376 376 HOH HOH . D 3 HOH B 17 377 377 HOH HOH . D 3 HOH B 18 379 379 HOH HOH . D 3 HOH B 19 380 380 HOH HOH . D 3 HOH B 20 381 381 HOH HOH . D 3 HOH B 21 382 382 HOH HOH . D 3 HOH B 22 383 383 HOH HOH . D 3 HOH B 23 384 384 HOH HOH . D 3 HOH B 24 385 385 HOH HOH . D 3 HOH B 25 386 386 HOH HOH . D 3 HOH B 26 387 387 HOH HOH . D 3 HOH B 27 388 388 HOH HOH . D 3 HOH B 28 389 389 HOH HOH . D 3 HOH B 29 390 390 HOH HOH . D 3 HOH B 30 391 391 HOH HOH . D 3 HOH B 31 392 392 HOH HOH . D 3 HOH B 32 393 393 HOH HOH . D 3 HOH B 33 394 394 HOH HOH . D 3 HOH B 34 395 395 HOH HOH . D 3 HOH B 35 396 396 HOH HOH . D 3 HOH B 36 397 397 HOH HOH . D 3 HOH B 37 398 398 HOH HOH . D 3 HOH B 38 399 399 HOH HOH . D 3 HOH B 39 400 400 HOH HOH . D 3 HOH B 40 401 401 HOH HOH . D 3 HOH B 41 402 402 HOH HOH . D 3 HOH B 42 403 403 HOH HOH . D 3 HOH B 43 404 404 HOH HOH . D 3 HOH B 44 405 405 HOH HOH . D 3 HOH B 45 406 406 HOH HOH . D 3 HOH B 46 407 407 HOH HOH . D 3 HOH B 47 408 408 HOH HOH . D 3 HOH B 48 409 409 HOH HOH . D 3 HOH B 49 410 410 HOH HOH . D 3 HOH B 50 411 411 HOH HOH . D 3 HOH B 51 412 412 HOH HOH . D 3 HOH B 52 413 413 HOH HOH . D 3 HOH B 53 414 414 HOH HOH . D 3 HOH B 54 415 415 HOH HOH . D 3 HOH B 55 416 416 HOH HOH . D 3 HOH B 56 417 417 HOH HOH . D 3 HOH B 57 418 418 HOH HOH . D 3 HOH B 58 419 419 HOH HOH . D 3 HOH B 59 420 420 HOH HOH . D 3 HOH B 60 421 421 HOH HOH . D 3 HOH B 61 422 422 HOH HOH . D 3 HOH B 62 423 423 HOH HOH . D 3 HOH B 63 424 424 HOH HOH . D 3 HOH B 64 425 425 HOH HOH . D 3 HOH B 65 426 426 HOH HOH . D 3 HOH B 66 427 427 HOH HOH . D 3 HOH B 67 428 428 HOH HOH . D 3 HOH B 68 429 429 HOH HOH . D 3 HOH B 69 430 430 HOH HOH . D 3 HOH B 70 431 431 HOH HOH . D 3 HOH B 71 432 432 HOH HOH . D 3 HOH B 72 434 434 HOH HOH . D 3 HOH B 73 435 435 HOH HOH . D 3 HOH B 74 436 436 HOH HOH . D 3 HOH B 75 437 437 HOH HOH . D 3 HOH B 76 438 438 HOH HOH . D 3 HOH B 77 439 439 HOH HOH . D 3 HOH B 78 440 440 HOH HOH . D 3 HOH B 79 441 441 HOH HOH . D 3 HOH B 80 442 442 HOH HOH . D 3 HOH B 81 443 443 HOH HOH . D 3 HOH B 82 444 444 HOH HOH . D 3 HOH B 83 445 445 HOH HOH . D 3 HOH B 84 446 446 HOH HOH . D 3 HOH B 85 447 447 HOH HOH . D 3 HOH B 86 448 448 HOH HOH . D 3 HOH B 87 449 449 HOH HOH . D 3 HOH B 88 451 451 HOH HOH . D 3 HOH B 89 452 452 HOH HOH . D 3 HOH B 90 453 453 HOH HOH . D 3 HOH B 91 454 454 HOH HOH . D 3 HOH B 92 455 455 HOH HOH . E 3 HOH A 1 2 2 HOH HOH . E 3 HOH A 2 362 362 HOH HOH . E 3 HOH A 3 363 363 HOH HOH . E 3 HOH A 4 364 364 HOH HOH . E 3 HOH A 5 365 365 HOH HOH . E 3 HOH A 6 366 366 HOH HOH . E 3 HOH A 7 367 367 HOH HOH . E 3 HOH A 8 368 368 HOH HOH . E 3 HOH A 9 369 369 HOH HOH . E 3 HOH A 10 370 370 HOH HOH . E 3 HOH A 11 371 371 HOH HOH . E 3 HOH A 12 372 372 HOH HOH . E 3 HOH A 13 373 373 HOH HOH . E 3 HOH A 14 374 374 HOH HOH . E 3 HOH A 15 375 375 HOH HOH . E 3 HOH A 16 376 376 HOH HOH . E 3 HOH A 17 377 377 HOH HOH . E 3 HOH A 18 378 378 HOH HOH . E 3 HOH A 19 379 379 HOH HOH . E 3 HOH A 20 380 380 HOH HOH . E 3 HOH A 21 381 381 HOH HOH . E 3 HOH A 22 382 382 HOH HOH . E 3 HOH A 23 383 383 HOH HOH . E 3 HOH A 24 384 384 HOH HOH . E 3 HOH A 25 385 385 HOH HOH . E 3 HOH A 26 386 386 HOH HOH . E 3 HOH A 27 387 387 HOH HOH . E 3 HOH A 28 388 388 HOH HOH . E 3 HOH A 29 389 389 HOH HOH . E 3 HOH A 30 390 390 HOH HOH . E 3 HOH A 31 391 391 HOH HOH . E 3 HOH A 32 392 392 HOH HOH . E 3 HOH A 33 393 393 HOH HOH . E 3 HOH A 34 394 394 HOH HOH . E 3 HOH A 35 395 395 HOH HOH . E 3 HOH A 36 396 396 HOH HOH . E 3 HOH A 37 397 397 HOH HOH . E 3 HOH A 38 398 398 HOH HOH . E 3 HOH A 39 399 399 HOH HOH . E 3 HOH A 40 400 400 HOH HOH . E 3 HOH A 41 401 401 HOH HOH . E 3 HOH A 42 402 402 HOH HOH . E 3 HOH A 43 403 403 HOH HOH . E 3 HOH A 44 404 404 HOH HOH . E 3 HOH A 45 405 405 HOH HOH . E 3 HOH A 46 406 406 HOH HOH . E 3 HOH A 47 407 407 HOH HOH . E 3 HOH A 48 408 408 HOH HOH . E 3 HOH A 49 409 409 HOH HOH . E 3 HOH A 50 410 410 HOH HOH . E 3 HOH A 51 411 411 HOH HOH . E 3 HOH A 52 412 412 HOH HOH . E 3 HOH A 53 413 413 HOH HOH . E 3 HOH A 54 414 414 HOH HOH . E 3 HOH A 55 415 415 HOH HOH . E 3 HOH A 56 416 416 HOH HOH . E 3 HOH A 57 417 417 HOH HOH . E 3 HOH A 58 418 418 HOH HOH . E 3 HOH A 59 419 419 HOH HOH . E 3 HOH A 60 420 420 HOH HOH . E 3 HOH A 61 421 421 HOH HOH . E 3 HOH A 62 422 422 HOH HOH . E 3 HOH A 63 423 423 HOH HOH . E 3 HOH A 64 424 424 HOH HOH . E 3 HOH A 65 425 425 HOH HOH . E 3 HOH A 66 426 426 HOH HOH . E 3 HOH A 67 427 427 HOH HOH . E 3 HOH A 68 428 428 HOH HOH . E 3 HOH A 69 429 429 HOH HOH . E 3 HOH A 70 430 430 HOH HOH . E 3 HOH A 71 431 431 HOH HOH . E 3 HOH A 72 432 432 HOH HOH . E 3 HOH A 73 433 433 HOH HOH . E 3 HOH A 74 434 434 HOH HOH . E 3 HOH A 75 435 435 HOH HOH . E 3 HOH A 76 436 436 HOH HOH . E 3 HOH A 77 437 437 HOH HOH . E 3 HOH A 78 438 438 HOH HOH . E 3 HOH A 79 439 439 HOH HOH . E 3 HOH A 80 440 440 HOH HOH . E 3 HOH A 81 441 441 HOH HOH . E 3 HOH A 82 442 442 HOH HOH . E 3 HOH A 83 443 443 HOH HOH . E 3 HOH A 84 444 444 HOH HOH . E 3 HOH A 85 445 445 HOH HOH . E 3 HOH A 86 446 446 HOH HOH . E 3 HOH A 87 447 447 HOH HOH . E 3 HOH A 88 448 448 HOH HOH . E 3 HOH A 89 449 449 HOH HOH . E 3 HOH A 90 450 450 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 CEF . . . C 2 20.701 9.5 29.108 1 44.24 ? S1 CEF 362 B 1 HETATM 2 C C1 CEF . . . C 2 21.725 10.331 27.949 1 43.81 ? C1 CEF 362 B 1 HETATM 3 C C2 CEF . . . C 2 22.827 9.358 27.605 1 44.72 ? C2 CEF 362 B 1 HETATM 4 C C3 CEF . . . C 2 24.041 9.851 27.398 1 44.38 ? C3 CEF 362 B 1 HETATM 5 C C4 CEF . . . C 2 22.591 7.896 27.513 1 44.57 ? C4 CEF 362 B 1 HETATM 6 C C5 CEF . . . C 2 23.653 7.104 26.912 1 45.5 ? C5 CEF 362 B 1 HETATM 7 O O1 CEF . . . C 2 23.42 6.484 25.844 1 46.77 ? O1 CEF 362 B 1 HETATM 8 O O2 CEF . . . C 2 24.777 7.112 27.477 1 44.35 ? O2 CEF 362 B 1 HETATM 9 N N1 CEF . . . C 2 21.534 7.288 27.945 1 44.07 ? N1 CEF 362 B 1 HETATM 10 C C6 CEF . . . C 2 20.278 7.981 28.287 1 42.66 ? C6 CEF 362 B 1 HETATM 11 C C7 CEF . . . C 2 19.289 7.219 29.223 1 40.35 ? C7 CEF 362 B 1 HETATM 12 C C8 CEF . . . C 2 18.77 5.811 28.864 1 35.97 ? C8 CEF 362 B 1 HETATM 13 O O3 CEF . . . C 2 19.476 4.961 28.338 1 35.8 ? O3 CEF 362 B 1 HETATM 14 N N2 CEF . . . C 2 19.555 7.65 30.628 1 44.35 ? N2 CEF 362 B 1 HETATM 15 C C9 CEF . . . C 2 20.249 7.438 31.78 1 47.55 ? C9 CEF 362 B 1 HETATM 16 O O4 CEF . . . C 2 20.029 8.209 32.695 1 44.66 ? O4 CEF 362 B 1 HETATM 17 C C10 CEF . . . C 2 21.231 6.398 32.126 1 51.46 ? C10 CEF 362 B 1 HETATM 18 N N3 CEF . . . C 2 20.866 5.364 32.788 1 53.49 ? N3 CEF 362 B 1 HETATM 19 O O5 CEF . . . C 2 19.591 5.045 33.173 1 53.96 ? O5 CEF 362 B 1 HETATM 20 C C11 CEF . . . C 2 18.493 4.886 32.267 1 53.27 ? C11 CEF 362 B 1 HETATM 21 C C12 CEF . . . C 2 22.692 6.57 31.85 1 53.75 ? C12 CEF 362 B 1 HETATM 22 C C13 CEF . . . C 2 23.255 6.713 30.563 1 55.06 ? C13 CEF 362 B 1 HETATM 23 S S2 CEF . . . C 2 24.987 6.885 30.729 1 57.26 ? S2 CEF 362 B 1 HETATM 24 C C14 CEF . . . C 2 24.878 6.768 32.448 1 54.93 ? C14 CEF 362 B 1 HETATM 25 N N4 CEF . . . C 2 25.958 6.828 33.264 1 54.73 ? N4 CEF 362 B 1 HETATM 26 N N5 CEF . . . C 2 23.609 6.6 32.886 1 54.15 ? N5 CEF 362 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #