data_3IXP # _model_server_result.job_id bxdlXEm2QchUf1OKoFjsWw _model_server_result.datetime_utc '2025-07-08 05:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ixp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":800}' # _entry.id 3IXP # _exptl.entry_id 3IXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.908 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(2-chlorophenyl)-4-methyl-5-(1-methylethyl)-1H-imidazol-1-yl]-5-methyl-2,3-dihydro-1,4-benzodioxine-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IXP _cell.length_a 147.875 _cell.length_b 147.875 _cell.length_c 59.776 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 59.776 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H24 Cl N3 O3' _chem_comp.formula_weight 425.908 _chem_comp.id 834 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(2-chlorophenyl)-4-methyl-5-(1-methylethyl)-1H-imidazol-1-yl]-5-methyl-2,3-dihydro-1,4-benzodioxine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(2-(2-chlorophenyl)-5-isopropyl-4-methyl-1H-imidazol-1-yl)-5-methyl-2,3-dihyrobenzo[b][1,4]dioxine-6-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 834 doub 1 n y C1 C2 834 sing 2 n y C1 H1 834 sing 3 n n C2 C3 834 doub 4 n y C2 H2 834 sing 5 n n C4 C3 834 sing 6 n y C3 H3 834 sing 7 n n C5 C4 834 doub 8 n y C4 H4 834 sing 9 n n C6 C5 834 sing 10 n y C5 CL8 834 sing 11 n n C7 C6 834 sing 12 n y N9 C7 834 doub 13 n y N12 C7 834 sing 14 n y C10 N9 834 sing 15 n y C13 C10 834 sing 16 n n C10 C11 834 doub 17 n y C17 C11 834 sing 18 n n C11 N12 834 sing 19 n y N12 N18 834 sing 20 n n C13 H13 834 sing 21 n n C13 H13A 834 sing 22 n n C13 H13B 834 sing 23 n n C24 C17 834 sing 24 n n C17 C28 834 sing 25 n n C17 H17 834 sing 26 n n N18 C19 834 sing 27 n n N18 HN18 834 sing 28 n n O34 C19 834 doub 29 n n C19 C35 834 sing 30 n n C24 H24 834 sing 31 n n C24 H24A 834 sing 32 n n C24 H24B 834 sing 33 n n C28 H28 834 sing 34 n n C28 H28A 834 sing 35 n n C28 H28B 834 sing 36 n n C35 C40 834 doub 37 n y C35 C36 834 sing 38 n y C36 C37 834 doub 39 n y C36 H36 834 sing 40 n n C37 C38 834 sing 41 n y C37 H37 834 sing 42 n n C39 C38 834 doub 43 n y C38 O47 834 sing 44 n n C40 C39 834 sing 45 n y C39 O50 834 sing 46 n n C41 C40 834 sing 47 n n C41 H41 834 sing 48 n n C41 H41A 834 sing 49 n n C41 H41B 834 sing 50 n n O47 C48 834 sing 51 n n C49 C48 834 sing 52 n n C48 H48 834 sing 53 n n C48 H48A 834 sing 54 n n O50 C49 834 sing 55 n n C49 H49 834 sing 56 n n C49 H49A 834 sing 57 n n # _atom_sites.entry_id 3IXP _atom_sites.fract_transf_matrix[1][1] 0.006762 _atom_sites.fract_transf_matrix[1][2] 0.003904 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPH A 1 900 900 EPH EPH . D 4 834 D 1 800 800 834 834 . E 5 HOH A 1 951 951 HOH HOH . E 5 HOH A 2 952 952 HOH HOH . E 5 HOH A 3 953 953 HOH HOH . E 5 HOH A 4 954 954 HOH HOH . E 5 HOH A 5 955 955 HOH HOH . E 5 HOH A 6 957 957 HOH HOH . E 5 HOH A 7 958 958 HOH HOH . E 5 HOH A 8 959 959 HOH HOH . E 5 HOH A 9 961 961 HOH HOH . E 5 HOH A 10 962 962 HOH HOH . E 5 HOH A 11 963 963 HOH HOH . E 5 HOH A 12 964 964 HOH HOH . E 5 HOH A 13 965 965 HOH HOH . E 5 HOH A 14 966 966 HOH HOH . E 5 HOH A 15 978 978 HOH HOH . E 5 HOH A 16 979 979 HOH HOH . E 5 HOH A 17 985 985 HOH HOH . E 5 HOH A 18 986 986 HOH HOH . E 5 HOH A 19 987 987 HOH HOH . E 5 HOH A 20 989 989 HOH HOH . E 5 HOH A 21 990 990 HOH HOH . E 5 HOH A 22 992 992 HOH HOH . E 5 HOH A 23 993 993 HOH HOH . E 5 HOH A 24 994 994 HOH HOH . E 5 HOH A 25 995 995 HOH HOH . E 5 HOH A 26 996 996 HOH HOH . E 5 HOH A 27 997 997 HOH HOH . F 5 HOH D 1 956 956 HOH HOH . F 5 HOH D 2 960 960 HOH HOH . F 5 HOH D 3 967 967 HOH HOH . F 5 HOH D 4 968 968 HOH HOH . F 5 HOH D 5 969 969 HOH HOH . F 5 HOH D 6 970 970 HOH HOH . F 5 HOH D 7 971 971 HOH HOH . F 5 HOH D 8 972 972 HOH HOH . F 5 HOH D 9 973 973 HOH HOH . F 5 HOH D 10 974 974 HOH HOH . F 5 HOH D 11 975 975 HOH HOH . F 5 HOH D 12 976 976 HOH HOH . F 5 HOH D 13 977 977 HOH HOH . F 5 HOH D 14 980 980 HOH HOH . F 5 HOH D 15 981 981 HOH HOH . F 5 HOH D 16 982 982 HOH HOH . F 5 HOH D 17 983 983 HOH HOH . F 5 HOH D 18 984 984 HOH HOH . F 5 HOH D 19 988 988 HOH HOH . F 5 HOH D 20 991 991 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 834 . . . D 4 8.289 66.087 12.696 1 54.71 ? C1 834 800 D 1 HETATM 2 C C2 834 . . . D 4 8.868 66.52 13.934 1 54.43 ? C2 834 800 D 1 HETATM 3 C C3 834 . . . D 4 8.613 65.781 15.135 1 54.5 ? C3 834 800 D 1 HETATM 4 C C4 834 . . . D 4 7.791 64.613 15.109 1 52.99 ? C4 834 800 D 1 HETATM 5 C C5 834 . . . D 4 7.219 64.179 13.888 1 51.61 ? C5 834 800 D 1 HETATM 6 C C6 834 . . . D 4 7.459 64.914 12.646 1 52.84 ? C6 834 800 D 1 HETATM 7 C C7 834 . . . D 4 6.862 64.523 11.339 1 51.71 ? C7 834 800 D 1 HETATM 8 CL CL8 834 . . . D 4 6.236 62.753 13.976 1 47.39 ? CL8 834 800 D 1 HETATM 9 N N9 834 . . . D 4 7.551 64.124 10.284 1 51.21 ? N9 834 800 D 1 HETATM 10 C C10 834 . . . D 4 6.59 63.834 9.225 1 51.59 ? C10 834 800 D 1 HETATM 11 C C11 834 . . . D 4 5.327 64.066 9.687 1 51.37 ? C11 834 800 D 1 HETATM 12 N N12 834 . . . D 4 5.53 64.535 11.095 1 51.35 ? N12 834 800 D 1 HETATM 13 C C13 834 . . . D 4 7.056 63.36 7.874 1 52.13 ? C13 834 800 D 1 HETATM 14 C C17 834 . . . D 4 4.034 63.887 8.916 1 50.86 ? C17 834 800 D 1 HETATM 15 N N18 834 . . . D 4 4.741 64.919 12.035 1 51 ? N18 834 800 D 1 HETATM 16 C C19 834 . . . D 4 4.167 66.155 12.126 1 49.35 ? C19 834 800 D 1 HETATM 17 C C24 834 . . . D 4 3.585 65.184 8.268 1 50.69 ? C24 834 800 D 1 HETATM 18 C C28 834 . . . D 4 2.941 63.326 9.818 1 52.39 ? C28 834 800 D 1 HETATM 19 O O34 834 . . . D 4 4.329 67.001 11.268 1 53.36 ? O34 834 800 D 1 HETATM 20 C C35 834 . . . D 4 3.513 66.424 13.405 1 46.94 ? C35 834 800 D 1 HETATM 21 C C36 834 . . . D 4 4.38 67.15 14.301 1 46.24 ? C36 834 800 D 1 HETATM 22 C C37 834 . . . D 4 3.97 67.524 15.598 1 45.01 ? C37 834 800 D 1 HETATM 23 C C38 834 . . . D 4 2.69 67.185 16.046 1 43.74 ? C38 834 800 D 1 HETATM 24 C C39 834 . . . D 4 1.776 66.455 15.186 1 44.59 ? C39 834 800 D 1 HETATM 25 C C40 834 . . . D 4 2.169 66.061 13.844 1 46.34 ? C40 834 800 D 1 HETATM 26 C C41 834 . . . D 4 1.18 65.306 12.978 1 47.54 ? C41 834 800 D 1 HETATM 27 O O47 834 . . . D 4 2.341 67.585 17.339 1 43.72 ? O47 834 800 D 1 HETATM 28 C C48 834 . . . D 4 1.099 67.079 17.883 1 43.92 ? C48 834 800 D 1 HETATM 29 C C49 834 . . . D 4 0.004 66.927 16.785 1 44.09 ? C49 834 800 D 1 HETATM 30 O O50 834 . . . D 4 0.492 66.132 15.675 1 43.71 ? O50 834 800 D 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #