data_3IXP
#
_model_server_result.job_id            aIOPS-FL4mCx7Y4khjxWkA 
_model_server_result.datetime_utc      '2025-07-08 02:35:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ixp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    3IXP 
#
_exptl.entry_id    3IXP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              709.933 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3IXP 
_cell.length_a            147.875 
_cell.length_b            147.875 
_cell.length_c            59.776 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IXP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 59.776 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C39 H68 N O8 P' 
_chem_comp.formula_weight    709.933 
_chem_comp.id                EPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 EPH sing 140 n n 
C1 O2 EPH sing 141 n n 
C1 H11 EPH sing 142 n n 
C1 H12A EPH sing 143 n n 
C2 C37 EPH sing 144 n n 
C2 O1 EPH sing 145 n n 
C2 H2 EPH sing 146 n n 
C4 O2 EPH sing 147 n n 
C4 O4 EPH doub 148 n n 
C4 C18 EPH sing 149 n n 
C18 C19 EPH sing 150 n n 
C18 H181 EPH sing 151 n n 
C18 H182 EPH sing 152 n n 
C19 C20 EPH sing 153 n n 
C19 H191 EPH sing 154 n n 
C19 H192 EPH sing 155 n n 
C20 C21 EPH sing 156 n n 
C20 H201 EPH sing 157 n n 
C20 H202 EPH sing 158 n n 
C21 C22 EPH sing 159 n n 
C21 H211 EPH sing 160 n n 
C21 H212 EPH sing 161 n n 
C22 C23 EPH sing 162 n n 
C22 H221 EPH sing 163 n n 
C22 H222 EPH sing 164 n n 
C23 C24 EPH sing 165 n n 
C23 H231 EPH sing 166 n n 
C23 H232 EPH sing 167 n n 
C24 C25 EPH doub 168 e n 
C24 H24 EPH sing 169 n n 
C25 C26 EPH sing 170 n n 
C25 H25 EPH sing 171 n n 
C26 C27 EPH sing 172 n n 
C26 H261 EPH sing 173 n n 
C26 H262 EPH sing 174 n n 
C27 C28 EPH sing 175 n n 
C27 H271 EPH sing 176 n n 
C27 H272 EPH sing 177 n n 
C28 C29 EPH doub 178 e n 
C28 H28 EPH sing 179 n n 
C29 C30 EPH sing 180 n n 
C29 H29 EPH sing 181 n n 
C30 C31 EPH sing 182 n n 
C30 H301 EPH sing 183 n n 
C30 H302 EPH sing 184 n n 
C31 C32 EPH sing 185 n n 
C31 H311 EPH sing 186 n n 
C31 H312 EPH sing 187 n n 
C32 C33 EPH doub 188 e n 
C32 H32 EPH sing 189 n n 
C33 C34 EPH sing 190 n n 
C33 H33 EPH sing 191 n n 
C34 H341 EPH sing 192 n n 
C34 H342 EPH sing 193 n n 
C34 H343 EPH sing 194 n n 
C37 O5 EPH sing 195 n n 
C37 H371 EPH sing 196 n n 
C37 H372 EPH sing 197 n n 
O5 P1 EPH sing 198 n n 
C3 O1 EPH sing 199 n n 
C3 O3 EPH doub 200 n n 
C3 C5 EPH sing 201 n n 
C5 C6 EPH sing 202 n n 
C5 H51 EPH sing 203 n n 
C5 H52 EPH sing 204 n n 
C6 C7 EPH sing 205 n n 
C6 H61 EPH sing 206 n n 
C6 H62 EPH sing 207 n n 
C7 C8 EPH sing 208 n n 
C7 H71 EPH sing 209 n n 
C7 H72 EPH sing 210 n n 
C8 C9 EPH sing 211 n n 
C8 H81 EPH sing 212 n n 
C8 H82 EPH sing 213 n n 
C9 C10 EPH sing 214 n n 
C9 H91 EPH sing 215 n n 
C9 H92 EPH sing 216 n n 
C10 C11 EPH sing 217 n n 
C10 H101 EPH sing 218 n n 
C10 H102 EPH sing 219 n n 
C11 C12 EPH sing 220 n n 
C11 H111 EPH sing 221 n n 
C11 H112 EPH sing 222 n n 
C12 C13 EPH doub 223 e n 
C12 H12 EPH sing 224 n n 
C13 C14 EPH sing 225 n n 
C13 H13 EPH sing 226 n n 
C14 C15 EPH sing 227 n n 
C14 H141 EPH sing 228 n n 
C14 H142 EPH sing 229 n n 
C15 C16 EPH doub 230 e n 
C15 H15 EPH sing 231 n n 
C16 C17 EPH sing 232 n n 
C16 H16 EPH sing 233 n n 
C17 C35 EPH sing 234 n n 
C17 H171 EPH sing 235 n n 
C17 H172 EPH sing 236 n n 
C35 C36 EPH sing 237 n n 
C35 H351 EPH sing 238 n n 
C35 H352 EPH sing 239 n n 
C36 H361 EPH sing 240 n n 
C36 H362 EPH sing 241 n n 
C36 H363 EPH sing 242 n n 
P1 O6 EPH sing 243 n n 
P1 O7 EPH doub 244 n n 
P1 O8 EPH sing 245 n n 
O6 HO6 EPH sing 246 n n 
O8 C38 EPH sing 247 n n 
C38 C39 EPH sing 248 n n 
C38 H381 EPH sing 249 n n 
C38 H382 EPH sing 250 n n 
C39 N1 EPH sing 251 n n 
C39 H391 EPH sing 252 n n 
C39 H392 EPH sing 253 n n 
N1 HN11 EPH sing 254 n n 
N1 HN12 EPH sing 255 n n 
#
_atom_sites.entry_id                     3IXP 
_atom_sites.fract_transf_matrix[1][1]    0.006762 
_atom_sites.fract_transf_matrix[1][2]    0.003904 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016729 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EPH A 1 900 900 EPH EPH . 
D 4 834 D 1 800 800 834 834 . 
E 5 HOH A 1 951 951 HOH HOH . 
E 5 HOH A 2 952 952 HOH HOH . 
E 5 HOH A 3 953 953 HOH HOH . 
E 5 HOH A 4 954 954 HOH HOH . 
E 5 HOH A 5 955 955 HOH HOH . 
E 5 HOH A 6 957 957 HOH HOH . 
E 5 HOH A 7 958 958 HOH HOH . 
E 5 HOH A 8 959 959 HOH HOH . 
E 5 HOH A 9 961 961 HOH HOH . 
E 5 HOH A 10 962 962 HOH HOH . 
E 5 HOH A 11 963 963 HOH HOH . 
E 5 HOH A 12 964 964 HOH HOH . 
E 5 HOH A 13 965 965 HOH HOH . 
E 5 HOH A 14 966 966 HOH HOH . 
E 5 HOH A 15 978 978 HOH HOH . 
E 5 HOH A 16 979 979 HOH HOH . 
E 5 HOH A 17 985 985 HOH HOH . 
E 5 HOH A 18 986 986 HOH HOH . 
E 5 HOH A 19 987 987 HOH HOH . 
E 5 HOH A 20 989 989 HOH HOH . 
E 5 HOH A 21 990 990 HOH HOH . 
E 5 HOH A 22 992 992 HOH HOH . 
E 5 HOH A 23 993 993 HOH HOH . 
E 5 HOH A 24 994 994 HOH HOH . 
E 5 HOH A 25 995 995 HOH HOH . 
E 5 HOH A 26 996 996 HOH HOH . 
E 5 HOH A 27 997 997 HOH HOH . 
F 5 HOH D 1 956 956 HOH HOH . 
F 5 HOH D 2 960 960 HOH HOH . 
F 5 HOH D 3 967 967 HOH HOH . 
F 5 HOH D 4 968 968 HOH HOH . 
F 5 HOH D 5 969 969 HOH HOH . 
F 5 HOH D 6 970 970 HOH HOH . 
F 5 HOH D 7 971 971 HOH HOH . 
F 5 HOH D 8 972 972 HOH HOH . 
F 5 HOH D 9 973 973 HOH HOH . 
F 5 HOH D 10 974 974 HOH HOH . 
F 5 HOH D 11 975 975 HOH HOH . 
F 5 HOH D 12 976 976 HOH HOH . 
F 5 HOH D 13 977 977 HOH HOH . 
F 5 HOH D 14 980 980 HOH HOH . 
F 5 HOH D 15 981 981 HOH HOH . 
F 5 HOH D 16 982 982 HOH HOH . 
F 5 HOH D 17 983 983 HOH HOH . 
F 5 HOH D 18 984 984 HOH HOH . 
F 5 HOH D 19 988 988 HOH HOH . 
F 5 HOH D 20 991 991 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EPH . . . C 3 -24.141 46.02 15.956 1 73.76 ? C1 EPH 900 A 1 
HETATM 2 C C2 EPH . . . C 3 -24.104 47.037 15.026 1 77.25 ? C2 EPH 900 A 1 
HETATM 3 C C4 EPH . . . C 3 -24.596 45.928 18.407 1 68.66 ? C4 EPH 900 A 1 
HETATM 4 O O2 EPH . . . C 3 -24.476 46.615 17.249 1 69.2 ? O2 EPH 900 A 1 
HETATM 5 O O4 EPH . . . C 3 -24.436 44.723 18.547 1 68.43 ? O4 EPH 900 A 1 
HETATM 6 C C18 EPH . . . C 3 -24.982 46.903 19.58 1 68.31 ? C18 EPH 900 A 1 
HETATM 7 C C19 EPH . . . C 3 -24.251 46.674 20.912 1 66.52 ? C19 EPH 900 A 1 
HETATM 8 C C20 EPH . . . C 3 -23.108 47.38 20.894 1 67.12 ? C20 EPH 900 A 1 
HETATM 9 C C21 EPH . . . C 3 -22.252 47.375 21.93 1 68.81 ? C21 EPH 900 A 1 
HETATM 10 C C22 EPH . . . C 3 -20.823 47.936 21.765 1 69.89 ? C22 EPH 900 A 1 
HETATM 11 C C23 EPH . . . C 3 -20.706 49.334 21.819 1 70.46 ? C23 EPH 900 A 1 
HETATM 12 C C24 EPH . . . C 3 -20.968 50.07 23.152 1 71.4 ? C24 EPH 900 A 1 
HETATM 13 C C25 EPH . . . C 3 -20.659 51.596 23.12 1 69.99 ? C25 EPH 900 A 1 
HETATM 14 C C26 EPH . . . C 3 -21.841 52.543 22.786 1 68.53 ? C26 EPH 900 A 1 
HETATM 15 C C27 EPH . . . C 3 -21.621 53.998 23.24 1 66.81 ? C27 EPH 900 A 1 
HETATM 16 C C28 EPH . . . C 3 -22.036 54.213 24.703 1 65.78 ? C28 EPH 900 A 1 
HETATM 17 C C29 EPH . . . C 3 -20.868 54.468 25.648 1 65.01 ? C29 EPH 900 A 1 
HETATM 18 C C30 EPH . . . C 3 -20.452 53.281 26.557 1 64.61 ? C30 EPH 900 A 1 
HETATM 19 C C31 EPH . . . C 3 -19.795 53.639 27.919 1 65.59 ? C31 EPH 900 A 1 
HETATM 20 C C32 EPH . . . C 3 -18.232 53.979 27.928 1 67.03 ? C32 EPH 900 A 1 
HETATM 21 C C33 EPH . . . C 3 -17.38 53.948 26.611 1 66.69 ? C33 EPH 900 A 1 
HETATM 22 C C34 EPH . . . C 3 -16.129 54.873 26.647 1 65.59 ? C34 EPH 900 A 1 
HETATM 23 C C37 EPH . . . C 3 -23.801 46.531 13.585 1 82.19 ? C37 EPH 900 A 1 
HETATM 24 O O5 EPH . . . C 3 -23.781 47.71 12.687 1 89.5 ? O5 EPH 900 A 1 
HETATM 25 C C3 EPH . . . C 3 -23.392 49.283 15.554 1 74.77 ? C3 EPH 900 A 1 
HETATM 26 O O1 EPH . . . C 3 -23.093 47.994 15.429 1 75.4 ? O1 EPH 900 A 1 
HETATM 27 O O3 EPH . . . C 3 -24.47 49.763 15.362 1 75.37 ? O3 EPH 900 A 1 
HETATM 28 C C5 EPH . . . C 3 -22.209 50.147 15.965 1 73.28 ? C5 EPH 900 A 1 
HETATM 29 C C6 EPH . . . C 3 -22.41 50.81 17.309 1 72.8 ? C6 EPH 900 A 1 
HETATM 30 C C7 EPH . . . C 3 -21.259 51.684 17.725 1 72.73 ? C7 EPH 900 A 1 
HETATM 31 C C8 EPH . . . C 3 -21.043 51.817 19.194 1 73.36 ? C8 EPH 900 A 1 
HETATM 32 C C9 EPH . . . C 3 -19.862 52.742 19.419 1 74.02 ? C9 EPH 900 A 1 
HETATM 33 C C10 EPH . . . C 3 -18.654 52.084 20.004 1 73.87 ? C10 EPH 900 A 1 
HETATM 34 C C11 EPH . . . C 3 -17.946 53.017 20.949 1 73.97 ? C11 EPH 900 A 1 
HETATM 35 C C12 EPH . . . C 3 -16.732 52.358 21.535 1 74.88 ? C12 EPH 900 A 1 
HETATM 36 C C13 EPH . . . C 3 -16.362 52.992 22.862 1 76.73 ? C13 EPH 900 A 1 
HETATM 37 C C14 EPH . . . C 3 -15.179 52.266 23.506 1 79.22 ? C14 EPH 900 A 1 
HETATM 38 C C15 EPH . . . C 3 -15.51 51.412 24.771 1 81.33 ? C15 EPH 900 A 1 
HETATM 39 C C16 EPH . . . C 3 -15.254 49.888 24.648 1 81.55 ? C16 EPH 900 A 1 
HETATM 40 C C17 EPH . . . C 3 -16.225 49.205 23.713 1 83.75 ? C17 EPH 900 A 1 
HETATM 41 C C35 EPH . . . C 3 -17.55 48.91 24.428 1 84.7 ? C35 EPH 900 A 1 
HETATM 42 C C36 EPH . . . C 3 -18.026 47.509 24.053 1 85.88 ? C36 EPH 900 A 1 
HETATM 43 P P1 EPH . . . C 3 -23.507 47.418 11.17 1 93.34 ? P1 EPH 900 A 1 
HETATM 44 O O6 EPH . . . C 3 -22.829 46.3 10.535 1 92.98 ? O6 EPH 900 A 1 
HETATM 45 O O7 EPH . . . C 3 -23.487 48.574 10.286 1 93.27 ? O7 EPH 900 A 1 
HETATM 46 O O8 EPH . . . C 3 -22.342 48.361 11.204 1 92.44 ? O8 EPH 900 A 1 
HETATM 47 C C38 EPH . . . C 3 -21.013 47.752 11.753 1 92.52 ? C38 EPH 900 A 1 
HETATM 48 C C39 EPH . . . C 3 -19.883 48.786 11.776 1 92.13 ? C39 EPH 900 A 1 
HETATM 49 N N1 EPH . . . C 3 -18.877 48.363 12.774 1 91.36 ? N1 EPH 900 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           49 
#