data_3IXT
#
_model_server_result.job_id            1b8rcsij06olANN8kwltgw 
_model_server_result.datetime_utc      '2024-11-07 17:36:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ixt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":219}' 
#
_entry.id    3IXT 
#
_exptl.entry_id    3IXT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IXT 
_cell.length_a            90.752 
_cell.length_b            90.752 
_cell.length_c            232.057 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IXT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,J,K,L 1 1 
D,E,F,H,I,M,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 133 L CYS 134 1_555 A SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 B SG CYS 147 H CYS 140 1_555 B SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 D SG CYS 23 B CYS 23 1_555 D SG CYS 87 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 D SG CYS 133 B CYS 134 1_555 D SG CYS 193 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf7 E SG CYS 22 A CYS 22 1_555 E SG CYS 97 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf8 E SG CYS 147 A CYS 140 1_555 E SG CYS 203 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 C C ACE 1 P ACE 253 1_555 C N ASN 2 P ASN 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 C C ASN 25 P ASN 277 1_555 C N NH2 26 P NH2 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 F C ACE 1 C ACE 253 1_555 F N ASN 2 C ASN 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 F C ASN 25 C ASN 277 1_555 F N NH2 26 C NH2 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 89 n n 
C1 C2 EDO sing 90 n n 
C1 H11 EDO sing 91 n n 
C1 H12 EDO sing 92 n n 
O1 HO1 EDO sing 93 n n 
C2 O2 EDO sing 94 n n 
C2 H21 EDO sing 95 n n 
C2 H22 EDO sing 96 n n 
O2 HO2 EDO sing 97 n n 
#
_atom_sites.entry_id                     3IXT 
_atom_sites.fract_transf_matrix[1][1]    0.011019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004309 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 EDO P 1 1 1 EDO EDO . 
H 4 EDO A 1 219 3 EDO EDO . 
I 4 EDO C 1 2 2 EDO EDO . 
J 5 HOH L 1 215 3 HOH HOH . 
J 5 HOH L 2 216 13 HOH HOH . 
J 5 HOH L 3 217 22 HOH HOH . 
J 5 HOH L 4 218 25 HOH HOH . 
J 5 HOH L 5 219 34 HOH HOH . 
J 5 HOH L 6 220 36 HOH HOH . 
J 5 HOH L 7 221 37 HOH HOH . 
J 5 HOH L 8 222 38 HOH HOH . 
J 5 HOH L 9 223 48 HOH HOH . 
J 5 HOH L 10 224 50 HOH HOH . 
J 5 HOH L 11 225 53 HOH HOH . 
J 5 HOH L 12 226 60 HOH HOH . 
J 5 HOH L 13 227 61 HOH HOH . 
J 5 HOH L 14 228 75 HOH HOH . 
J 5 HOH L 15 229 77 HOH HOH . 
J 5 HOH L 16 230 82 HOH HOH . 
J 5 HOH L 17 231 84 HOH HOH . 
J 5 HOH L 18 232 88 HOH HOH . 
J 5 HOH L 19 233 92 HOH HOH . 
J 5 HOH L 20 234 94 HOH HOH . 
J 5 HOH L 21 235 96 HOH HOH . 
J 5 HOH L 22 236 100 HOH HOH . 
J 5 HOH L 23 237 102 HOH HOH . 
J 5 HOH L 24 238 105 HOH HOH . 
J 5 HOH L 25 239 111 HOH HOH . 
J 5 HOH L 26 240 112 HOH HOH . 
J 5 HOH L 27 241 115 HOH HOH . 
J 5 HOH L 28 242 117 HOH HOH . 
J 5 HOH L 29 243 118 HOH HOH . 
J 5 HOH L 30 244 127 HOH HOH . 
J 5 HOH L 31 245 129 HOH HOH . 
J 5 HOH L 32 246 138 HOH HOH . 
J 5 HOH L 33 247 139 HOH HOH . 
J 5 HOH L 34 248 140 HOH HOH . 
J 5 HOH L 35 249 145 HOH HOH . 
J 5 HOH L 36 250 147 HOH HOH . 
K 5 HOH H 1 219 2 HOH HOH . 
K 5 HOH H 2 220 4 HOH HOH . 
K 5 HOH H 3 221 8 HOH HOH . 
K 5 HOH H 4 222 12 HOH HOH . 
K 5 HOH H 5 223 17 HOH HOH . 
K 5 HOH H 6 224 26 HOH HOH . 
K 5 HOH H 7 225 27 HOH HOH . 
K 5 HOH H 8 226 31 HOH HOH . 
K 5 HOH H 9 227 32 HOH HOH . 
K 5 HOH H 10 228 42 HOH HOH . 
K 5 HOH H 11 229 43 HOH HOH . 
K 5 HOH H 12 230 45 HOH HOH . 
K 5 HOH H 13 231 46 HOH HOH . 
K 5 HOH H 14 232 47 HOH HOH . 
K 5 HOH H 15 233 51 HOH HOH . 
K 5 HOH H 16 234 52 HOH HOH . 
K 5 HOH H 17 235 55 HOH HOH . 
K 5 HOH H 18 236 57 HOH HOH . 
K 5 HOH H 19 237 64 HOH HOH . 
K 5 HOH H 20 238 65 HOH HOH . 
K 5 HOH H 21 239 66 HOH HOH . 
K 5 HOH H 22 240 67 HOH HOH . 
K 5 HOH H 23 241 71 HOH HOH . 
K 5 HOH H 24 242 74 HOH HOH . 
K 5 HOH H 25 243 78 HOH HOH . 
K 5 HOH H 26 244 80 HOH HOH . 
K 5 HOH H 27 245 97 HOH HOH . 
K 5 HOH H 28 246 99 HOH HOH . 
K 5 HOH H 29 247 106 HOH HOH . 
K 5 HOH H 30 248 109 HOH HOH . 
K 5 HOH H 31 249 110 HOH HOH . 
K 5 HOH H 32 250 124 HOH HOH . 
K 5 HOH H 33 251 125 HOH HOH . 
K 5 HOH H 34 252 130 HOH HOH . 
K 5 HOH H 35 253 133 HOH HOH . 
K 5 HOH H 36 254 134 HOH HOH . 
K 5 HOH H 37 255 135 HOH HOH . 
K 5 HOH H 38 256 144 HOH HOH . 
K 5 HOH H 39 257 146 HOH HOH . 
K 5 HOH H 40 258 148 HOH HOH . 
L 5 HOH P 1 15 15 HOH HOH . 
L 5 HOH P 2 44 44 HOH HOH . 
L 5 HOH P 3 120 120 HOH HOH . 
M 5 HOH B 1 28 28 HOH HOH . 
M 5 HOH B 2 215 6 HOH HOH . 
M 5 HOH B 3 216 7 HOH HOH . 
M 5 HOH B 4 217 10 HOH HOH . 
M 5 HOH B 5 218 14 HOH HOH . 
M 5 HOH B 6 219 19 HOH HOH . 
M 5 HOH B 7 220 21 HOH HOH . 
M 5 HOH B 8 221 29 HOH HOH . 
M 5 HOH B 9 222 30 HOH HOH . 
M 5 HOH B 10 223 33 HOH HOH . 
M 5 HOH B 11 224 39 HOH HOH . 
M 5 HOH B 12 225 54 HOH HOH . 
M 5 HOH B 13 226 56 HOH HOH . 
M 5 HOH B 14 227 62 HOH HOH . 
M 5 HOH B 15 228 68 HOH HOH . 
M 5 HOH B 16 229 70 HOH HOH . 
M 5 HOH B 17 230 79 HOH HOH . 
M 5 HOH B 18 231 81 HOH HOH . 
M 5 HOH B 19 232 83 HOH HOH . 
M 5 HOH B 20 233 85 HOH HOH . 
M 5 HOH B 21 234 89 HOH HOH . 
M 5 HOH B 22 235 98 HOH HOH . 
M 5 HOH B 23 236 103 HOH HOH . 
M 5 HOH B 24 237 107 HOH HOH . 
M 5 HOH B 25 238 113 HOH HOH . 
M 5 HOH B 26 239 116 HOH HOH . 
M 5 HOH B 27 240 122 HOH HOH . 
M 5 HOH B 28 241 128 HOH HOH . 
M 5 HOH B 29 242 137 HOH HOH . 
M 5 HOH B 30 243 150 HOH HOH . 
N 5 HOH A 1 220 1 HOH HOH . 
N 5 HOH A 2 221 5 HOH HOH . 
N 5 HOH A 3 222 9 HOH HOH . 
N 5 HOH A 4 223 11 HOH HOH . 
N 5 HOH A 5 224 18 HOH HOH . 
N 5 HOH A 6 225 20 HOH HOH . 
N 5 HOH A 7 226 23 HOH HOH . 
N 5 HOH A 8 227 24 HOH HOH . 
N 5 HOH A 9 228 35 HOH HOH . 
N 5 HOH A 10 229 40 HOH HOH . 
N 5 HOH A 11 230 41 HOH HOH . 
N 5 HOH A 12 231 49 HOH HOH . 
N 5 HOH A 13 232 58 HOH HOH . 
N 5 HOH A 14 233 59 HOH HOH . 
N 5 HOH A 15 234 63 HOH HOH . 
N 5 HOH A 16 235 69 HOH HOH . 
N 5 HOH A 17 236 72 HOH HOH . 
N 5 HOH A 18 237 73 HOH HOH . 
N 5 HOH A 19 238 76 HOH HOH . 
N 5 HOH A 20 239 86 HOH HOH . 
N 5 HOH A 21 240 87 HOH HOH . 
N 5 HOH A 22 241 90 HOH HOH . 
N 5 HOH A 23 242 91 HOH HOH . 
N 5 HOH A 24 243 93 HOH HOH . 
N 5 HOH A 25 244 95 HOH HOH . 
N 5 HOH A 26 245 101 HOH HOH . 
N 5 HOH A 27 246 104 HOH HOH . 
N 5 HOH A 28 247 108 HOH HOH . 
N 5 HOH A 29 248 114 HOH HOH . 
N 5 HOH A 30 249 119 HOH HOH . 
N 5 HOH A 31 250 121 HOH HOH . 
N 5 HOH A 32 251 123 HOH HOH . 
N 5 HOH A 33 252 126 HOH HOH . 
N 5 HOH A 34 253 131 HOH HOH . 
N 5 HOH A 35 254 132 HOH HOH . 
N 5 HOH A 36 255 136 HOH HOH . 
N 5 HOH A 37 256 141 HOH HOH . 
N 5 HOH A 38 257 142 HOH HOH . 
N 5 HOH A 39 258 143 HOH HOH . 
N 5 HOH A 40 259 149 HOH HOH . 
O 5 HOH C 1 16 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 4 -39.51 -0.197 16.759 1 70.37 ? C1 EDO 219 A 1 
HETATM 2 O O1 EDO . . . H 4 -38.333 0.057 15.979 1 73.63 ? O1 EDO 219 A 1 
HETATM 3 C C2 EDO . . . H 4 -40.517 0.932 16.578 1 55.86 ? C2 EDO 219 A 1 
HETATM 4 O O2 EDO . . . H 4 -41.071 0.879 15.258 1 54.64 ? O2 EDO 219 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           4 
#