data_3J2T # _model_server_result.job_id eDBAM5xoryEWzZoryqHUBg _model_server_result.datetime_utc '2025-01-28 09:07:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3j2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1301}' # _entry.id 3J2T # _exptl.entry_id 3J2T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3J2T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3J2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 639 A CYS 633 1_555 A SG CYS 669 A CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 681 A CYS 675 1_555 A SG CYS 711 A CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 710 A CYS 704 1_555 A SG CYS 755 A CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 767 A CYS 761 1_555 A SG CYS 810 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 809 A CYS 803 1_555 A SG CYS 852 A CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 B SG CYS 639 B CYS 633 1_555 B SG CYS 669 B CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 681 B CYS 675 1_555 B SG CYS 711 B CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 710 B CYS 704 1_555 B SG CYS 755 B CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 B SG CYS 767 B CYS 761 1_555 B SG CYS 810 B CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf10 B SG CYS 809 B CYS 803 1_555 B SG CYS 852 B CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf11 C SG CYS 639 C CYS 633 1_555 C SG CYS 669 C CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 C SG CYS 681 C CYS 675 1_555 C SG CYS 711 C CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf13 C SG CYS 710 C CYS 704 1_555 C SG CYS 755 C CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf14 C SG CYS 767 C CYS 761 1_555 C SG CYS 810 C CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf15 C SG CYS 809 C CYS 803 1_555 C SG CYS 852 C CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf16 D SG CYS 639 D CYS 633 1_555 D SG CYS 669 D CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 D SG CYS 681 D CYS 675 1_555 D SG CYS 711 D CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf18 D SG CYS 710 D CYS 704 1_555 D SG CYS 755 D CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf19 D SG CYS 767 D CYS 761 1_555 D SG CYS 810 D CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf20 D SG CYS 809 D CYS 803 1_555 D SG CYS 852 D CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf21 E SG CYS 639 E CYS 633 1_555 E SG CYS 669 E CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf22 E SG CYS 681 E CYS 675 1_555 E SG CYS 711 E CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf23 E SG CYS 710 E CYS 704 1_555 E SG CYS 755 E CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf24 E SG CYS 767 E CYS 761 1_555 E SG CYS 810 E CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf25 E SG CYS 809 E CYS 803 1_555 E SG CYS 852 E CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf26 F SG CYS 639 F CYS 633 1_555 F SG CYS 669 F CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf27 F SG CYS 681 F CYS 675 1_555 F SG CYS 711 F CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf28 F SG CYS 710 F CYS 704 1_555 F SG CYS 755 F CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf29 F SG CYS 767 F CYS 761 1_555 F SG CYS 810 F CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf30 F SG CYS 809 F CYS 803 1_555 F SG CYS 852 F CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf31 G SG CYS 639 G CYS 633 1_555 G SG CYS 669 G CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf32 G SG CYS 681 G CYS 675 1_555 G SG CYS 711 G CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf33 G SG CYS 710 G CYS 704 1_555 G SG CYS 755 G CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf34 G SG CYS 767 G CYS 761 1_555 G SG CYS 810 G CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf35 G SG CYS 809 G CYS 803 1_555 G SG CYS 852 G CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 H NE2 HIS 18 H HIS 18 1_555 V FE HEM . H HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 H SD MET 80 H MET 80 1_555 V FE HEM . H HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 I NE2 HIS 18 I HIS 18 1_555 W FE HEM . I HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 I SD MET 80 I MET 80 1_555 W FE HEM . I HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 J NE2 HIS 18 J HIS 18 1_555 X FE HEM . J HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc6 J SD MET 80 J MET 80 1_555 X FE HEM . J HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 K NE2 HIS 18 K HIS 18 1_555 Y FE HEM . K HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc8 K SD MET 80 K MET 80 1_555 Y FE HEM . K HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 L NE2 HIS 18 L HIS 18 1_555 Z FE HEM . L HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc10 L SD MET 80 L MET 80 1_555 Z FE HEM . L HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc11 M NE2 HIS 18 M HIS 18 1_555 AA FE HEM . M HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc12 M SD MET 80 M MET 80 1_555 AA FE HEM . M HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc13 N NE2 HIS 18 N HIS 18 1_555 BA FE HEM . N HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc14 N SD MET 80 N MET 80 1_555 BA FE HEM . N HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3J2T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 3 ATP A 1 1301 1258 ATP ATP . P 3 ATP B 1 1301 1258 ATP ATP . Q 3 ATP C 1 1301 1258 ATP ATP . R 3 ATP D 1 1301 1258 ATP ATP . S 3 ATP E 1 1301 1258 ATP ATP . T 3 ATP F 1 1301 1258 ATP ATP . U 3 ATP G 1 1301 1258 ATP ATP . V 4 HEM H 1 500 500 HEM HEM . W 4 HEM I 1 500 500 HEM HEM . X 4 HEM J 1 500 500 HEM HEM . Y 4 HEM K 1 500 500 HEM HEM . Z 4 HEM L 1 500 500 HEM HEM . AA 4 HEM M 1 500 500 HEM HEM . BA 4 HEM N 1 500 500 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 3 0.731 -41.5 -8.522 1 0 ? PG ATP 1301 A 1 HETATM 2 O O1G ATP . . . O 3 0.602 -40.27 -9.497 1 0 ? O1G ATP 1301 A 1 HETATM 3 O O2G ATP . . . O 3 2.019 -41.506 -7.689 1 0 ? O2G ATP 1301 A 1 HETATM 4 O O3G ATP . . . O 3 -0.51 -41.878 -7.686 1 0 ? O3G ATP 1301 A 1 HETATM 5 P PB ATP . . . O 3 1.663 -44.088 -8.72 1 0 ? PB ATP 1301 A 1 HETATM 6 O O1B ATP . . . O 3 2.756 -44.787 -9.431 1 0 ? O1B ATP 1301 A 1 HETATM 7 O O2B ATP . . . O 3 2.048 -43.796 -7.283 1 0 ? O2B ATP 1301 A 1 HETATM 8 O O3B ATP . . . O 3 0.957 -42.928 -9.387 1 0 ? O3B ATP 1301 A 1 HETATM 9 P PA ATP . . . O 3 -0.967 -45.024 -8.006 1 0 ? PA ATP 1301 A 1 HETATM 10 O O1A ATP . . . O 3 -1.973 -44.663 -9.07 1 0 ? O1A ATP 1301 A 1 HETATM 11 O O2A ATP . . . O 3 -0.906 -44.275 -6.723 1 0 ? O2A ATP 1301 A 1 HETATM 12 O O3A ATP . . . O 3 0.532 -45.218 -8.581 1 0 ? O3A ATP 1301 A 1 HETATM 13 O O5' ATP . . . O 3 -1.253 -46.554 -7.6 1 0 ? O5' ATP 1301 A 1 HETATM 14 C C5' ATP . . . O 3 -0.866 -47.598 -8.5 1 0 ? C5' ATP 1301 A 1 HETATM 15 C C4' ATP . . . O 3 -1.86 -48.73 -8.48 1 0 ? C4' ATP 1301 A 1 HETATM 16 O O4' ATP . . . O 3 -1.123 -49.949 -8.598 1 0 ? O4' ATP 1301 A 1 HETATM 17 C C3' ATP . . . O 3 -2.624 -48.836 -7.17 1 0 ? C3' ATP 1301 A 1 HETATM 18 O O3' ATP . . . O 3 -3.826 -48.032 -7.141 1 0 ? O3' ATP 1301 A 1 HETATM 19 C C2' ATP . . . O 3 -2.879 -50.324 -7.132 1 0 ? C2' ATP 1301 A 1 HETATM 20 O O2' ATP . . . O 3 -3.998 -50.569 -8.004 1 0 ? O2' ATP 1301 A 1 HETATM 21 C C1' ATP . . . O 3 -1.653 -50.959 -7.728 1 0 ? C1' ATP 1301 A 1 HETATM 22 N N9 ATP . . . O 3 -0.594 -51.436 -6.762 1 0 ? N9 ATP 1301 A 1 HETATM 23 C C8 ATP . . . O 3 0.708 -51.11 -6.754 1 0 ? C8 ATP 1301 A 1 HETATM 24 N N7 ATP . . . O 3 1.409 -51.738 -5.781 1 0 ? N7 ATP 1301 A 1 HETATM 25 C C5 ATP . . . O 3 0.508 -52.526 -5.141 1 0 ? C5 ATP 1301 A 1 HETATM 26 C C6 ATP . . . O 3 0.537 -53.458 -3.984 1 0 ? C6 ATP 1301 A 1 HETATM 27 N N6 ATP . . . O 3 1.683 -53.722 -3.288 1 0 ? N6 ATP 1301 A 1 HETATM 28 N N1 ATP . . . O 3 -0.584 -54.1 -3.689 1 0 ? N1 ATP 1301 A 1 HETATM 29 C C2 ATP . . . O 3 -1.748 -53.865 -4.317 1 0 ? C2 ATP 1301 A 1 HETATM 30 N N3 ATP . . . O 3 -1.862 -53.011 -5.347 1 0 ? N3 ATP 1301 A 1 HETATM 31 C C4 ATP . . . O 3 -0.782 -52.341 -5.805 1 0 ? C4 ATP 1301 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 92 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #