data_3J6H # _model_server_result.job_id m2fwBCS1Mzd3017EQ25Wwg _model_server_result.datetime_utc '2025-02-27 17:39:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3j6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 3J6H # _exptl.entry_id 3J6H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3J6H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3J6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 501 1_555 E O1G GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 D MG MG . A MG 501 1_555 E O1B GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc3 F MG MG . B MG 601 1_555 G O1B G2P . B G2P 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 F MG MG . B MG 601 1_555 G O1G G2P . B G2P 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 181 n n PG O2G GTP sing 182 n n PG O3G GTP sing 183 n n PG O3B GTP sing 184 n n O2G HOG2 GTP sing 185 n n O3G HOG3 GTP sing 186 n n O3B PB GTP sing 187 n n PB O1B GTP doub 188 n n PB O2B GTP sing 189 n n PB O3A GTP sing 190 n n O2B HOB2 GTP sing 191 n n O3A PA GTP sing 192 n n PA O1A GTP doub 193 n n PA O2A GTP sing 194 n n PA O5' GTP sing 195 n n O2A HOA2 GTP sing 196 n n O5' C5' GTP sing 197 n n C5' C4' GTP sing 198 n n C5' H5' GTP sing 199 n n C5' "H5''" GTP sing 200 n n C4' O4' GTP sing 201 n n C4' C3' GTP sing 202 n n C4' H4' GTP sing 203 n n O4' C1' GTP sing 204 n n C3' O3' GTP sing 205 n n C3' C2' GTP sing 206 n n C3' H3' GTP sing 207 n n O3' HO3' GTP sing 208 n n C2' O2' GTP sing 209 n n C2' C1' GTP sing 210 n n C2' H2' GTP sing 211 n n O2' HO2' GTP sing 212 n n C1' N9 GTP sing 213 n n C1' H1' GTP sing 214 n n N9 C8 GTP sing 215 n y N9 C4 GTP sing 216 n y C8 N7 GTP doub 217 n y C8 H8 GTP sing 218 n n N7 C5 GTP sing 219 n y C5 C6 GTP sing 220 n n C5 C4 GTP doub 221 n y C6 O6 GTP doub 222 n n C6 N1 GTP sing 223 n n N1 C2 GTP sing 224 n n N1 HN1 GTP sing 225 n n C2 N2 GTP sing 226 n n C2 N3 GTP doub 227 n n N2 HN21 GTP sing 228 n n N2 HN22 GTP sing 229 n n N3 C4 GTP sing 230 n n # _atom_sites.entry_id 3J6H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 501 501 MG MG . E 5 GTP A 1 502 500 GTP GTP . F 4 MG B 1 601 601 MG MG . G 6 G2P B 1 602 600 G2P G2P . H 7 SO4 K 1 500 500 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 5 3.703 34.774 8.698 1 20 ? PG GTP 502 A 1 HETATM 2 O O1G GTP . . . E 5 3.125 36.057 8.151 1 20 ? O1G GTP 502 A 1 HETATM 3 O O2G GTP . . . E 5 5.194 34.811 8.93 1 20 ? O2G GTP 502 A 1 HETATM 4 O O3G GTP . . . E 5 3.21 33.524 8.008 1 20 ? O3G GTP 502 A 1 HETATM 5 O O3B GTP . . . E 5 3.082 34.669 10.18 1 20 ? O3B GTP 502 A 1 HETATM 6 P PB GTP . . . E 5 1.607 35.234 10.49 1 20 ? PB GTP 502 A 1 HETATM 7 O O1B GTP . . . E 5 1.618 36.729 10.276 1 20 ? O1B GTP 502 A 1 HETATM 8 O O2B GTP . . . E 5 1.152 34.666 11.813 1 20 ? O2B GTP 502 A 1 HETATM 9 O O3A GTP . . . E 5 0.722 34.565 9.323 1 20 ? O3A GTP 502 A 1 HETATM 10 P PA GTP . . . E 5 -0.724 35.165 8.948 1 20 ? PA GTP 502 A 1 HETATM 11 O O1A GTP . . . E 5 -1.149 34.581 7.622 1 20 ? O1A GTP 502 A 1 HETATM 12 O O2A GTP . . . E 5 -0.675 36.664 9.131 1 20 ? O2A GTP 502 A 1 HETATM 13 O O5' GTP . . . E 5 -1.67 34.549 10.096 1 20 ? O5' GTP 502 A 1 HETATM 14 C C5' GTP . . . E 5 -3.087 34.69 10.02 1 20 ? C5' GTP 502 A 1 HETATM 15 C C4' GTP . . . E 5 -3.733 33.957 11.189 1 20 ? C4' GTP 502 A 1 HETATM 16 O O4' GTP . . . E 5 -3.668 34.77 12.363 1 20 ? O4' GTP 502 A 1 HETATM 17 C C3' GTP . . . E 5 -5.198 33.658 10.91 1 20 ? C3' GTP 502 A 1 HETATM 18 O O3' GTP . . . E 5 -5.427 32.247 10.953 1 20 ? O3' GTP 502 A 1 HETATM 19 C C2' GTP . . . E 5 -5.988 34.346 12.005 1 20 ? C2' GTP 502 A 1 HETATM 20 O O2' GTP . . . E 5 -6.724 33.38 12.76 1 20 ? O2' GTP 502 A 1 HETATM 21 C C1' GTP . . . E 5 -4.968 35.038 12.896 1 20 ? C1' GTP 502 A 1 HETATM 22 N N9 GTP . . . E 5 -5.217 36.501 12.899 1 20 ? N9 GTP 502 A 1 HETATM 23 C C8 GTP . . . E 5 -4.759 37.379 11.986 1 20 ? C8 GTP 502 A 1 HETATM 24 N N7 GTP . . . E 5 -5.164 38.642 12.275 1 20 ? N7 GTP 502 A 1 HETATM 25 C C5 GTP . . . E 5 -5.9 38.583 13.4 1 20 ? C5 GTP 502 A 1 HETATM 26 C C6 GTP . . . E 5 -6.63 39.551 14.252 1 20 ? C6 GTP 502 A 1 HETATM 27 O O6 GTP . . . E 5 -6.649 40.769 13.971 1 20 ? O6 GTP 502 A 1 HETATM 28 N N1 GTP . . . E 5 -7.268 39.082 15.332 1 20 ? N1 GTP 502 A 1 HETATM 29 C C2 GTP . . . E 5 -7.264 37.776 15.659 1 20 ? C2 GTP 502 A 1 HETATM 30 N N2 GTP . . . E 5 -7.936 37.384 16.769 1 20 ? N2 GTP 502 A 1 HETATM 31 N N3 GTP . . . E 5 -6.618 36.833 14.924 1 20 ? N3 GTP 502 A 1 HETATM 32 C C4 GTP . . . E 5 -5.932 37.17 13.806 1 20 ? C4 GTP 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 32 #