data_3J6P # _model_server_result.job_id x3qpn8vnnfbltngU6ydkog _model_server_result.datetime_utc '2024-11-05 01:21:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3j6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 3J6P # _exptl.entry_id 3J6P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3J6P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3J6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id MG _struct_conn.ptnr1_label_comp_id MG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id MG _struct_conn.ptnr1_auth_seq_id 501 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O1G _struct_conn.ptnr2_label_comp_id GTP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GTP _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.449 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 3J6P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 501 947 MG MG . E 5 GTP A 1 502 948 GTP GTP . F 6 GDP B 1 501 949 GDP GDP . G 7 TA1 B 1 502 950 TA1 TA1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 5 65.16 70.56 62.664 1 29.97 ? PG GTP 502 A 1 HETATM 2 O O1G GTP . . . E 5 65.537 71.849 63.364 1 28.7 ? O1G GTP 502 A 1 HETATM 3 O O2G GTP . . . E 5 63.738 70.095 63.012 1 34.97 ? O2G GTP 502 A 1 HETATM 4 O O3G GTP . . . E 5 66.04 69.389 63.089 1 32.1 ? O3G GTP 502 A 1 HETATM 5 O O3B GTP . . . E 5 65.364 70.92 61.059 1 35.17 ? O3B GTP 502 A 1 HETATM 6 P PB GTP . . . E 5 66.754 71.459 60.351 1 41.4 ? PB GTP 502 A 1 HETATM 7 O O1B GTP . . . E 5 66.665 72.884 60.065 1 41.17 ? O1B GTP 502 A 1 HETATM 8 O O2B GTP . . . E 5 67.014 70.502 59.199 1 42.02 ? O2B GTP 502 A 1 HETATM 9 O O3A GTP . . . E 5 67.856 71.115 61.353 1 39.24 ? O3A GTP 502 A 1 HETATM 10 P PA GTP . . . E 5 69.32 71.502 61.543 1 41.34 ? PA GTP 502 A 1 HETATM 11 O O1A GTP . . . E 5 69.806 70.824 62.778 1 43.37 ? O1A GTP 502 A 1 HETATM 12 O O2A GTP . . . E 5 69.511 72.965 61.494 1 44.48 ? O2A GTP 502 A 1 HETATM 13 O O5' GTP . . . E 5 70.072 70.768 60.278 1 34.27 ? O5' GTP 502 A 1 HETATM 14 C C5' GTP . . . E 5 71.468 71.002 60.258 1 25.47 ? C5' GTP 502 A 1 HETATM 15 C C4' GTP . . . E 5 72.228 70.359 59.142 1 17.26 ? C4' GTP 502 A 1 HETATM 16 O O4' GTP . . . E 5 72.251 71.224 57.976 1 18.2 ? O4' GTP 502 A 1 HETATM 17 C C3' GTP . . . E 5 73.67 70.208 59.572 1 18.14 ? C3' GTP 502 A 1 HETATM 18 O O3' GTP . . . E 5 74.269 69.145 58.867 1 19.98 ? O3' GTP 502 A 1 HETATM 19 C C2' GTP . . . E 5 74.247 71.569 59.217 1 17.5 ? C2' GTP 502 A 1 HETATM 20 O O2' GTP . . . E 5 75.652 71.444 58.98 1 19.33 ? O2' GTP 502 A 1 HETATM 21 C C1' GTP . . . E 5 73.475 71.973 57.952 1 18.43 ? C1' GTP 502 A 1 HETATM 22 N N9 GTP . . . E 5 73.133 73.402 57.844 1 9.96 ? N9 GTP 502 A 1 HETATM 23 C C8 GTP . . . E 5 72.403 74.147 58.736 1 11.6 ? C8 GTP 502 A 1 HETATM 24 N N7 GTP . . . E 5 72.258 75.394 58.377 1 7.31 ? N7 GTP 502 A 1 HETATM 25 C C5 GTP . . . E 5 72.941 75.489 57.188 1 2 ? C5 GTP 502 A 1 HETATM 26 C C6 GTP . . . E 5 73.143 76.581 56.346 1 3.48 ? C6 GTP 502 A 1 HETATM 27 O O6 GTP . . . E 5 72.715 77.72 56.511 1 2.56 ? O6 GTP 502 A 1 HETATM 28 N N1 GTP . . . E 5 73.907 76.271 55.2 1 2 ? N1 GTP 502 A 1 HETATM 29 C C2 GTP . . . E 5 74.425 75.025 54.917 1 2 ? C2 GTP 502 A 1 HETATM 30 N N2 GTP . . . E 5 75.118 74.916 53.82 1 2 ? N2 GTP 502 A 1 HETATM 31 N N3 GTP . . . E 5 74.25 73.972 55.716 1 2 ? N3 GTP 502 A 1 HETATM 32 C C4 GTP . . . E 5 73.498 74.257 56.828 1 3.56 ? C4 GTP 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #