data_3J7B # _model_server_result.job_id jqKAVLNKLeUgV8J6J0xpiQ _model_server_result.datetime_utc '2025-03-05 23:55:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3j7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 3J7B # _exptl.entry_id 3J7B _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3J7B _cell.length_a 67.842 _cell.length_b 172.081 _cell.length_c 182.067 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3J7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 317 n n PA O2A NDP sing 318 n n PA O5B NDP sing 319 n n PA O3 NDP sing 320 n n O2A HOA2 NDP sing 321 n n O5B C5B NDP sing 322 n n C5B C4B NDP sing 323 n n C5B H51A NDP sing 324 n n C5B H52A NDP sing 325 n n C4B O4B NDP sing 326 n n C4B C3B NDP sing 327 n n C4B H4B NDP sing 328 n n O4B C1B NDP sing 329 n n C3B O3B NDP sing 330 n n C3B C2B NDP sing 331 n n C3B H3B NDP sing 332 n n O3B HO3A NDP sing 333 n n C2B O2B NDP sing 334 n n C2B C1B NDP sing 335 n n C2B H2B NDP sing 336 n n O2B P2B NDP sing 337 n n C1B N9A NDP sing 338 n n C1B H1B NDP sing 339 n n N9A C8A NDP sing 340 n y N9A C4A NDP sing 341 n y C8A N7A NDP doub 342 n y C8A H8A NDP sing 343 n n N7A C5A NDP sing 344 n y C5A C6A NDP sing 345 n y C5A C4A NDP doub 346 n y C6A N6A NDP sing 347 n n C6A N1A NDP doub 348 n y N6A H61A NDP sing 349 n n N6A H62A NDP sing 350 n n N1A C2A NDP sing 351 n y C2A N3A NDP doub 352 n y C2A H2A NDP sing 353 n n N3A C4A NDP sing 354 n y O3 PN NDP sing 355 n n PN O1N NDP doub 356 n n PN O2N NDP sing 357 n n PN O5D NDP sing 358 n n O2N H21N NDP sing 359 n n O5D C5D NDP sing 360 n n C5D C4D NDP sing 361 n n C5D H51N NDP sing 362 n n C5D H52N NDP sing 363 n n C4D O4D NDP sing 364 n n C4D C3D NDP sing 365 n n C4D H4D NDP sing 366 n n O4D C1D NDP sing 367 n n C3D O3D NDP sing 368 n n C3D C2D NDP sing 369 n n C3D H3D NDP sing 370 n n O3D HO3N NDP sing 371 n n C2D O2D NDP sing 372 n n C2D C1D NDP sing 373 n n C2D H2D NDP sing 374 n n O2D HO2N NDP sing 375 n n C1D N1N NDP sing 376 n n C1D H1D NDP sing 377 n n N1N C2N NDP sing 378 n n N1N C6N NDP sing 379 n n C2N C3N NDP doub 380 n n C2N H2N NDP sing 381 n n C3N C7N NDP sing 382 n n C3N C4N NDP sing 383 n n C7N O7N NDP doub 384 n n C7N N7N NDP sing 385 n n N7N H71N NDP sing 386 n n N7N H72N NDP sing 387 n n C4N C5N NDP sing 388 n n C4N H41N NDP sing 389 n n C4N H42N NDP sing 390 n n C5N C6N NDP doub 391 n n C5N H5N NDP sing 392 n n C6N H6N NDP sing 393 n n P2B O1X NDP doub 394 n n P2B O2X NDP sing 395 n n P2B O3X NDP sing 396 n n O2X HOP2 NDP sing 397 n n O3X HOP3 NDP sing 398 n n # _atom_sites.entry_id 3J7B _atom_sites.fract_transf_matrix[1][1] 0.01474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 527 HEM HEM . F 3 NDP A 1 602 528 NDP NDP . G 2 HEM B 1 601 527 HEM HEM . H 3 NDP B 1 602 528 NDP NDP . I 2 HEM C 1 601 527 HEM HEM . J 3 NDP C 1 602 528 NDP NDP . K 2 HEM D 1 601 527 HEM HEM . L 3 NDP D 1 602 528 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 3 20.723 42.844 3.054 1 24.15 ? PA NDP 602 B 1 HETATM 2 O O1A NDP . . . H 3 20.152 42.535 1.712 1 24.15 ? O1A NDP 602 B 1 HETATM 3 O O2A NDP . . . H 3 21.927 43.732 3.204 1 24.15 ? O2A NDP 602 B 1 HETATM 4 O O5B NDP . . . H 3 20.963 41.426 3.847 1 24.15 ? O5B NDP 602 B 1 HETATM 5 C C5B NDP . . . H 3 21.715 40.662 2.951 1 24.15 ? C5B NDP 602 B 1 HETATM 6 C C4B NDP . . . H 3 22.014 39.33 3.599 1 24.15 ? C4B NDP 602 B 1 HETATM 7 O O4B NDP . . . H 3 21.137 38.339 3.095 1 24.15 ? O4B NDP 602 B 1 HETATM 8 C C3B NDP . . . H 3 23.479 38.913 3.267 1 24.15 ? C3B NDP 602 B 1 HETATM 9 O O3B NDP . . . H 3 24.159 38.603 4.446 1 24.15 ? O3B NDP 602 B 1 HETATM 10 C C2B NDP . . . H 3 23.274 37.602 2.473 1 24.15 ? C2B NDP 602 B 1 HETATM 11 O O2B NDP . . . H 3 24.195 36.674 2.717 1 24.15 ? O2B NDP 602 B 1 HETATM 12 C C1B NDP . . . H 3 21.913 37.164 3.092 1 24.15 ? C1B NDP 602 B 1 HETATM 13 N N9A NDP . . . H 3 21.23 36.126 2.307 1 24.15 ? N9A NDP 602 B 1 HETATM 14 C C8A NDP . . . H 3 20.932 36.111 0.929 1 24.15 ? C8A NDP 602 B 1 HETATM 15 N N7A NDP . . . H 3 20.297 34.983 0.532 1 24.15 ? N7A NDP 602 B 1 HETATM 16 C C5A NDP . . . H 3 20.182 34.232 1.716 1 24.15 ? C5A NDP 602 B 1 HETATM 17 C C6A NDP . . . H 3 19.625 32.972 1.977 1 24.15 ? C6A NDP 602 B 1 HETATM 18 N N6A NDP . . . H 3 19.054 32.25 0.955 1 24.15 ? N6A NDP 602 B 1 HETATM 19 N N1A NDP . . . H 3 19.63 32.427 3.235 1 24.15 ? N1A NDP 602 B 1 HETATM 20 C C2A NDP . . . H 3 20.219 33.212 4.202 1 24.15 ? C2A NDP 602 B 1 HETATM 21 N N3A NDP . . . H 3 20.79 34.427 4.115 1 24.15 ? N3A NDP 602 B 1 HETATM 22 C C4A NDP . . . H 3 20.759 34.929 2.829 1 24.15 ? C4A NDP 602 B 1 HETATM 23 O O3 NDP . . . H 3 19.468 43.659 3.742 1 24.15 ? O3 NDP 602 B 1 HETATM 24 P PN NDP . . . H 3 19.608 43.551 5.321 1 24.15 ? PN NDP 602 B 1 HETATM 25 O O1N NDP . . . H 3 18.582 44.418 5.935 1 24.15 ? O1N NDP 602 B 1 HETATM 26 O O2N NDP . . . H 3 21.035 43.469 5.817 1 24.15 ? O2N NDP 602 B 1 HETATM 27 O O5D NDP . . . H 3 19.019 41.965 5.796 1 24.15 ? O5D NDP 602 B 1 HETATM 28 C C5D NDP . . . H 3 17.862 41.748 5.084 1 24.15 ? C5D NDP 602 B 1 HETATM 29 C C4D NDP . . . H 3 17.247 40.446 5.573 1 24.15 ? C4D NDP 602 B 1 HETATM 30 O O4D NDP . . . H 3 18.093 39.332 5.2 1 24.15 ? O4D NDP 602 B 1 HETATM 31 C C3D NDP . . . H 3 17.23 40.504 7.107 1 24.15 ? C3D NDP 602 B 1 HETATM 32 O O3D NDP . . . H 3 15.994 40.967 7.517 1 24.15 ? O3D NDP 602 B 1 HETATM 33 C C2D NDP . . . H 3 17.443 39.04 7.508 1 24.15 ? C2D NDP 602 B 1 HETATM 34 O O2D NDP . . . H 3 16.252 38.342 7.619 1 24.15 ? O2D NDP 602 B 1 HETATM 35 C C1D NDP . . . H 3 18.244 38.443 6.303 1 24.15 ? C1D NDP 602 B 1 HETATM 36 N N1N NDP . . . H 3 19.686 38.324 6.652 1 24.15 ? N1N NDP 602 B 1 HETATM 37 C C2N NDP . . . H 3 20.262 39.239 7.504 1 24.15 ? C2N NDP 602 B 1 HETATM 38 C C3N NDP . . . H 3 21.574 39.182 7.84 1 24.15 ? C3N NDP 602 B 1 HETATM 39 C C7N NDP . . . H 3 22.031 40.226 8.744 1 24.15 ? C7N NDP 602 B 1 HETATM 40 O O7N NDP . . . H 3 22.588 40.028 9.832 1 24.15 ? O7N NDP 602 B 1 HETATM 41 N N7N NDP . . . H 3 21.814 41.534 8.331 1 24.15 ? N7N NDP 602 B 1 HETATM 42 C C4N NDP . . . H 3 22.491 38.127 7.319 1 24.15 ? C4N NDP 602 B 1 HETATM 43 C C5N NDP . . . H 3 21.788 37.182 6.407 1 24.15 ? C5N NDP 602 B 1 HETATM 44 C C6N NDP . . . H 3 20.48 37.293 6.114 1 24.15 ? C6N NDP 602 B 1 HETATM 45 P P2B NDP . . . H 3 25.7 36.932 1.703 1 24.15 ? P2B NDP 602 B 1 HETATM 46 O O1X NDP . . . H 3 26.365 37.945 2.592 1 24.15 ? O1X NDP 602 B 1 HETATM 47 O O2X NDP . . . H 3 25 37.439 0.48 1 24.15 ? O2X NDP 602 B 1 HETATM 48 O O3X NDP . . . H 3 26.332 35.538 1.63 1 24.15 ? O3X NDP 602 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #