data_3J94 # _model_server_result.job_id UNyFEL9aldgq1YIZ8s0aPg _model_server_result.datetime_utc '2025-01-02 21:30:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3j94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":802}' # _entry.id 3J94 # _exptl.entry_id 3J94 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3J94 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3J94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3J94 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 801 1 ATP ATP . H 2 ATP A 1 802 1 ATP ATP . I 2 ATP B 1 801 2 ATP ATP . J 2 ATP B 1 802 2 ATP ATP . K 2 ATP C 1 801 3 ATP ATP . L 2 ATP C 1 802 3 ATP ATP . M 2 ATP D 1 801 4 ATP ATP . N 2 ATP D 1 802 4 ATP ATP . O 2 ATP E 1 801 5 ATP ATP . P 2 ATP E 1 802 5 ATP ATP . Q 2 ATP F 1 801 6 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 2 -21.151 -24.674 -5.986 1 190.12 ? PG ATP 802 D 1 HETATM 2 O O1G ATP . . . N 2 -22.545 -24.548 -5.416 1 190.12 ? O1G ATP 802 D 1 HETATM 3 O O2G ATP . . . N 2 -20.859 -23.765 -7.156 1 190.12 ? O2G ATP 802 D 1 HETATM 4 O O3G ATP . . . N 2 -20.078 -24.707 -4.926 1 190.12 ? O3G ATP 802 D 1 HETATM 5 P PB ATP . . . N 2 -22.384 -26.961 -7.08 1 190.12 ? PB ATP 802 D 1 HETATM 6 O O1B ATP . . . N 2 -23.302 -27.053 -5.886 1 190.12 ? O1B ATP 802 D 1 HETATM 7 O O2B ATP . . . N 2 -22.861 -26.467 -8.438 1 190.12 ? O2B ATP 802 D 1 HETATM 8 O O3B ATP . . . N 2 -21.073 -26.145 -6.637 1 190.12 ? O3B ATP 802 D 1 HETATM 9 P PA ATP . . . N 2 -21.64 -29.542 -6.171 1 190.12 ? PA ATP 802 D 1 HETATM 10 O O1A ATP . . . N 2 -20.818 -29.02 -4.987 1 190.12 ? O1A ATP 802 D 1 HETATM 11 O O2A ATP . . . N 2 -20.937 -30.624 -6.96 1 190.12 ? O2A ATP 802 D 1 HETATM 12 O O3A ATP . . . N 2 -21.751 -28.414 -7.316 1 190.12 ? O3A ATP 802 D 1 HETATM 13 O O5' ATP . . . N 2 -23.225 -29.892 -5.842 1 190.12 ? O5' ATP 802 D 1 HETATM 14 C C5' ATP . . . N 2 -23.846 -30.9 -6.641 1 190.12 ? C5' ATP 802 D 1 HETATM 15 C C4' ATP . . . N 2 -23.22 -32.267 -6.374 1 190.12 ? C4' ATP 802 D 1 HETATM 16 O O4' ATP . . . N 2 -23.431 -32.676 -5.026 1 190.12 ? O4' ATP 802 D 1 HETATM 17 C C3' ATP . . . N 2 -23.748 -33.34 -7.304 1 190.12 ? C3' ATP 802 D 1 HETATM 18 O O3' ATP . . . N 2 -22.711 -33.774 -8.189 1 190.12 ? O3' ATP 802 D 1 HETATM 19 C C2' ATP . . . N 2 -24.182 -34.473 -6.4 1 190.12 ? C2' ATP 802 D 1 HETATM 20 O O2' ATP . . . N 2 -23.341 -35.598 -6.648 1 190.12 ? O2' ATP 802 D 1 HETATM 21 C C1' ATP . . . N 2 -24.03 -33.969 -4.965 1 190.12 ? C1' ATP 802 D 1 HETATM 22 N N9 ATP . . . N 2 -25.279 -33.758 -4.151 1 190.12 ? N9 ATP 802 D 1 HETATM 23 C C8 ATP . . . N 2 -25.411 -33.744 -2.775 1 190.12 ? C8 ATP 802 D 1 HETATM 24 N N7 ATP . . . N 2 -26.727 -33.506 -2.466 1 190.12 ? N7 ATP 802 D 1 HETATM 25 C C5 ATP . . . N 2 -27.441 -33.35 -3.613 1 190.12 ? C5 ATP 802 D 1 HETATM 26 C C6 ATP . . . N 2 -28.856 -33.074 -4.03 1 190.12 ? C6 ATP 802 D 1 HETATM 27 N N6 ATP . . . N 2 -29.888 -32.897 -3.151 1 190.12 ? N6 ATP 802 D 1 HETATM 28 N N1 ATP . . . N 2 -29.121 -33.004 -5.359 1 190.12 ? N1 ATP 802 D 1 HETATM 29 C C2 ATP . . . N 2 -28.177 -33.162 -6.308 1 190.12 ? C2 ATP 802 D 1 HETATM 30 N N3 ATP . . . N 2 -26.907 -33.406 -5.991 1 190.12 ? N3 ATP 802 D 1 HETATM 31 C C4 ATP . . . N 2 -26.473 -33.518 -4.708 1 190.12 ? C4 ATP 802 D 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 85 _model_server_stats.query_time_ms 1188 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #