data_3J9L
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_model_server_result.job_id            RrtxE6R_A_VU7Vhi7NOotw 
_model_server_result.datetime_utc      '2025-03-06 09:58:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3j9l 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1301}' 
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_entry.id    3J9L 
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_exptl.entry_id    3J9L 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3J9L 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3J9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DTP doub 83 n n 
PG O2G DTP sing 84 n n 
PG O3G DTP sing 85 n n 
PG O3B DTP sing 86 n n 
O2G HOG2 DTP sing 87 n n 
O3G HOG3 DTP sing 88 n n 
PB O1B DTP doub 89 n n 
PB O2B DTP sing 90 n n 
PB O3B DTP sing 91 n n 
PB O3A DTP sing 92 n n 
O2B HOB2 DTP sing 93 n n 
PA O1A DTP doub 94 n n 
PA O2A DTP sing 95 n n 
PA O3A DTP sing 96 n n 
PA O5' DTP sing 97 n n 
O2A HOA2 DTP sing 98 n n 
O5' C5' DTP sing 99 n n 
C5' C4' DTP sing 100 n n 
C5' "H5'1" DTP sing 101 n n 
C5' "H5'2" DTP sing 102 n n 
C4' O4' DTP sing 103 n n 
C4' C3' DTP sing 104 n n 
C4' H4' DTP sing 105 n n 
O4' C1' DTP sing 106 n n 
C3' O3' DTP sing 107 n n 
C3' C2' DTP sing 108 n n 
C3' H3' DTP sing 109 n n 
O3' HO3' DTP sing 110 n n 
C2' C1' DTP sing 111 n n 
C2' "H2'1" DTP sing 112 n n 
C2' "H2'2" DTP sing 113 n n 
C1' N9 DTP sing 114 n n 
C1' H1' DTP sing 115 n n 
N9 C8 DTP sing 116 n y 
N9 C4 DTP sing 117 n y 
C8 N7 DTP doub 118 n y 
C8 H8 DTP sing 119 n n 
N7 C5 DTP sing 120 n y 
C5 C6 DTP sing 121 n y 
C5 C4 DTP doub 122 n y 
C6 N6 DTP sing 123 n n 
C6 N1 DTP doub 124 n y 
N6 HN61 DTP sing 125 n n 
N6 HN62 DTP sing 126 n n 
N1 C2 DTP sing 127 n y 
C2 N3 DTP doub 128 n y 
C2 H2 DTP sing 129 n n 
N3 C4 DTP sing 130 n y 
#
_atom_sites.entry_id                     3J9L 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 2 DTP C 1 1301 2 DTP DTP . 
R 2 DTP D 1 1301 3 DTP DTP . 
S 2 DTP E 1 1301 4 DTP DTP . 
T 2 DTP F 1 1301 5 DTP DTP . 
U 2 DTP G 1 1301 6 DTP DTP . 
V 2 DTP H 1 1301 7 DTP DTP . 
W 2 DTP I 1 1301 8 DTP DTP . 
X 2 DTP J 1 1301 9 DTP DTP . 
Y 2 DTP K 1 1301 10 DTP DTP . 
Z 2 DTP L 1 1301 11 DTP DTP . 
AA 2 DTP M 1 1301 12 DTP DTP . 
BA 2 DTP N 1 1301 13 DTP DTP . 
CA 2 DTP O 1 1301 14 DTP DTP . 
DA 2 DTP P 1 1301 15 DTP DTP . 
EA 2 DTP Q 1 1301 16 DTP DTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . Q 2 177.131 243.868 173.5 1 20 ? PG DTP 1301 C 1 
HETATM 2 O O1G DTP . . . Q 2 176.589 243.757 172.096 1 20 ? O1G DTP 1301 C 1 
HETATM 3 O O2G DTP . . . Q 2 178.084 245.021 173.711 1 20 ? O2G DTP 1301 C 1 
HETATM 4 O O3G DTP . . . Q 2 177.594 242.56 174.095 1 20 ? O3G DTP 1301 C 1 
HETATM 5 P PB DTP . . . Q 2 175.93 244.277 175.991 1 20 ? PB DTP 1301 C 1 
HETATM 6 O O1B DTP . . . Q 2 177.206 243.584 176.403 1 20 ? O1B DTP 1301 C 1 
HETATM 7 O O2B DTP . . . Q 2 174.605 243.804 176.539 1 20 ? O2B DTP 1301 C 1 
HETATM 8 O O3B DTP . . . Q 2 175.844 244.263 174.384 1 20 ? O3B DTP 1301 C 1 
HETATM 9 P PA DTP . . . Q 2 177.419 246.642 175.914 1 20 ? PA DTP 1301 C 1 
HETATM 10 O O1A DTP . . . Q 2 177.192 247.292 174.57 1 20 ? O1A DTP 1301 C 1 
HETATM 11 O O2A DTP . . . Q 2 178.597 245.72 176.116 1 20 ? O2A DTP 1301 C 1 
HETATM 12 O O3A DTP . . . Q 2 176.08 245.846 176.321 1 20 ? O3A DTP 1301 C 1 
HETATM 13 O O5' DTP . . . Q 2 177.491 247.802 177.029 1 20 ? O5' DTP 1301 C 1 
HETATM 14 C C5' DTP . . . Q 2 178.259 248.981 176.798 1 20 ? C5' DTP 1301 C 1 
HETATM 15 C C4' DTP . . . Q 2 177.601 249.809 175.701 1 20 ? C4' DTP 1301 C 1 
HETATM 16 O O4' DTP . . . Q 2 176.52 250.566 176.251 1 20 ? O4' DTP 1301 C 1 
HETATM 17 C C3' DTP . . . Q 2 178.586 250.788 175.083 1 20 ? C3' DTP 1301 C 1 
HETATM 18 O O3' DTP . . . Q 2 178.719 250.531 173.682 1 20 ? O3' DTP 1301 C 1 
HETATM 19 C C2' DTP . . . Q 2 178.012 252.174 175.306 1 20 ? C2' DTP 1301 C 1 
HETATM 20 C C1' DTP . . . Q 2 176.698 251.97 176.048 1 20 ? C1' DTP 1301 C 1 
HETATM 21 N N9 DTP . . . Q 2 176.753 252.662 177.36 1 20 ? N9 DTP 1301 C 1 
HETATM 22 C C8 DTP . . . Q 2 177.539 253.712 177.665 1 20 ? C8 DTP 1301 C 1 
HETATM 23 N N7 DTP . . . Q 2 177.348 254.11 178.949 1 20 ? N7 DTP 1301 C 1 
HETATM 24 C C5 DTP . . . Q 2 176.418 253.301 179.489 1 20 ? C5 DTP 1301 C 1 
HETATM 25 C C6 DTP . . . Q 2 175.752 253.169 180.807 1 20 ? C6 DTP 1301 C 1 
HETATM 26 N N6 DTP . . . Q 2 176.052 254.006 181.83 1 20 ? N6 DTP 1301 C 1 
HETATM 27 N N1 DTP . . . Q 2 174.836 252.188 180.953 1 20 ? N1 DTP 1301 C 1 
HETATM 28 C C2 DTP . . . Q 2 174.53 251.35 179.944 1 20 ? C2 DTP 1301 C 1 
HETATM 29 N N3 DTP . . . Q 2 175.094 251.412 178.725 1 20 ? N3 DTP 1301 C 1 
HETATM 30 C C4 DTP . . . Q 2 176.028 252.349 178.438 1 20 ? C4 DTP 1301 C 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    101 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
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