data_3J9S
#
_model_server_result.job_id            '_DcrNFV3bGDv9r79VWgtwg' 
_model_server_result.datetime_utc      '2024-10-19 19:40:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3j9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    3J9S 
#
_exptl.entry_id    3J9S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3J9S 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3J9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? 3-MERIC 3 'complete point assembly' 1 
? monomeric 1 'point asymmetric unit' 2 
? monomeric 1 'point asymmetric unit, std point frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 (1-3) 
A,B,C,D,E,F 2 1 
A,B,C,D,E,F 3 P 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
P 'transform to point frame' ? ? 0.483373 0.872202 -0.074927 0.873105 -0.486541 -0.031064 -0.063549 -0.050404 -0.996705 -2.8606 0.54497 -1.63472 
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.493942 0.867977 0.051358 -0.858367 -0.496189 0.130392 0.138661 0.020322 0.990131 -1.03074 4.93395 -0.18379 
3 'point symmetry operation' ? ? -0.493942 -0.858367 0.138661 0.867977 -0.496189 0.020322 0.051358 0.130392 0.990131 3.7515 3.34657 -0.40843 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
metalc ? metalc1 A NE2 HIS 154 A HIS 153 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3J9S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 501 ZN ZN . 
C 3 CL A 1 502 502 CL CL . 
D 4 CA A 1 503 503 CA CA . 
E 4 CA A 1 504 504 CA CA . 
F 5 HOH A 1 601 601 HOH HOH . 
F 5 HOH A 2 602 602 HOH HOH . 
F 5 HOH A 3 603 603 HOH HOH . 
F 5 HOH A 4 604 604 HOH HOH . 
F 5 HOH A 5 605 605 HOH HOH . 
F 5 HOH A 6 606 606 HOH HOH . 
F 5 HOH A 7 607 607 HOH HOH . 
F 5 HOH A 8 608 608 HOH HOH . 
F 5 HOH A 9 609 609 HOH HOH . 
F 5 HOH A 10 610 610 HOH HOH . 
F 5 HOH A 11 611 611 HOH HOH . 
F 5 HOH A 12 612 612 HOH HOH . 
F 5 HOH A 13 613 613 HOH HOH . 
F 5 HOH A 14 614 614 HOH HOH . 
F 5 HOH A 15 615 615 HOH HOH . 
F 5 HOH A 16 616 616 HOH HOH . 
F 5 HOH A 17 617 617 HOH HOH . 
F 5 HOH A 18 618 618 HOH HOH . 
F 5 HOH A 19 619 619 HOH HOH . 
F 5 HOH A 20 620 620 HOH HOH . 
F 5 HOH A 21 621 621 HOH HOH . 
F 5 HOH A 22 622 622 HOH HOH . 
F 5 HOH A 23 623 623 HOH HOH . 
F 5 HOH A 24 624 624 HOH HOH . 
F 5 HOH A 25 625 625 HOH HOH . 
F 5 HOH A 26 626 626 HOH HOH . 
F 5 HOH A 27 627 627 HOH HOH . 
F 5 HOH A 28 628 628 HOH HOH . 
F 5 HOH A 29 629 629 HOH HOH . 
F 5 HOH A 30 630 630 HOH HOH . 
F 5 HOH A 31 631 631 HOH HOH . 
F 5 HOH A 32 632 632 HOH HOH . 
F 5 HOH A 33 633 633 HOH HOH . 
F 5 HOH A 34 634 634 HOH HOH . 
F 5 HOH A 35 635 635 HOH HOH . 
F 5 HOH A 36 636 636 HOH HOH . 
F 5 HOH A 37 637 637 HOH HOH . 
F 5 HOH A 38 638 638 HOH HOH . 
F 5 HOH A 39 639 639 HOH HOH . 
F 5 HOH A 40 640 640 HOH HOH . 
F 5 HOH A 41 641 641 HOH HOH . 
F 5 HOH A 42 642 642 HOH HOH . 
F 5 HOH A 43 643 643 HOH HOH . 
F 5 HOH A 44 644 644 HOH HOH . 
F 5 HOH A 45 645 645 HOH HOH . 
F 5 HOH A 46 646 646 HOH HOH . 
F 5 HOH A 47 647 647 HOH HOH . 
F 5 HOH A 48 648 648 HOH HOH . 
F 5 HOH A 49 649 649 HOH HOH . 
F 5 HOH A 50 650 650 HOH HOH . 
F 5 HOH A 51 651 651 HOH HOH . 
F 5 HOH A 52 652 652 HOH HOH . 
F 5 HOH A 53 653 653 HOH HOH . 
F 5 HOH A 54 654 654 HOH HOH . 
F 5 HOH A 55 655 655 HOH HOH . 
F 5 HOH A 56 656 656 HOH HOH . 
F 5 HOH A 57 657 657 HOH HOH . 
F 5 HOH A 58 658 658 HOH HOH . 
F 5 HOH A 59 659 659 HOH HOH . 
F 5 HOH A 60 660 660 HOH HOH . 
F 5 HOH A 61 661 661 HOH HOH . 
F 5 HOH A 62 662 662 HOH HOH . 
F 5 HOH A 63 663 663 HOH HOH . 
F 5 HOH A 64 664 664 HOH HOH . 
F 5 HOH A 65 665 665 HOH HOH . 
F 5 HOH A 66 666 666 HOH HOH . 
F 5 HOH A 67 667 667 HOH HOH . 
F 5 HOH A 68 668 668 HOH HOH . 
F 5 HOH A 69 669 669 HOH HOH . 
F 5 HOH A 70 670 670 HOH HOH . 
F 5 HOH A 71 671 671 HOH HOH . 
F 5 HOH A 72 672 672 HOH HOH . 
F 5 HOH A 73 673 673 HOH HOH . 
F 5 HOH A 74 674 674 HOH HOH . 
F 5 HOH A 75 675 675 HOH HOH . 
F 5 HOH A 76 676 676 HOH HOH . 
F 5 HOH A 77 677 677 HOH HOH . 
F 5 HOH A 78 678 678 HOH HOH . 
F 5 HOH A 79 679 679 HOH HOH . 
F 5 HOH A 80 680 680 HOH HOH . 
F 5 HOH A 81 681 681 HOH HOH . 
F 5 HOH A 82 682 682 HOH HOH . 
F 5 HOH A 83 683 683 HOH HOH . 
F 5 HOH A 84 684 684 HOH HOH . 
F 5 HOH A 85 685 685 HOH HOH . 
F 5 HOH A 86 686 686 HOH HOH . 
F 5 HOH A 87 687 687 HOH HOH . 
F 5 HOH A 88 688 688 HOH HOH . 
F 5 HOH A 89 689 689 HOH HOH . 
F 5 HOH A 90 690 690 HOH HOH . 
F 5 HOH A 91 691 691 HOH HOH . 
F 5 HOH A 92 692 692 HOH HOH . 
F 5 HOH A 93 693 693 HOH HOH . 
F 5 HOH A 94 694 694 HOH HOH . 
F 5 HOH A 95 695 695 HOH HOH . 
F 5 HOH A 96 696 696 HOH HOH . 
F 5 HOH A 97 697 697 HOH HOH . 
F 5 HOH A 98 698 698 HOH HOH . 
F 5 HOH A 99 699 699 HOH HOH . 
F 5 HOH A 100 700 700 HOH HOH . 
F 5 HOH A 101 701 701 HOH HOH . 
F 5 HOH A 102 702 702 HOH HOH . 
F 5 HOH A 103 703 703 HOH HOH . 
F 5 HOH A 104 704 704 HOH HOH . 
F 5 HOH A 105 705 705 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               1.134 
_atom_site.Cartn_y               2.729 
_atom_site.Cartn_z               0.231 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#