data_3JAW # _model_server_result.job_id gS0N5_z-nebBO5xPvE9HKQ _model_server_result.datetime_utc '2025-01-31 10:43:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jaw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3JAW # _exptl.entry_id 3JAW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JAW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 71 A GLU 71 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc2 E O1B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc3 E O1G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc4 H O1B GTP . C GTP 501 1_555 I MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 H O1G GTP . C GTP 501 1_555 I MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 179 n n PG O2G GTP sing 180 n n PG O3G GTP sing 181 n n PG O3B GTP sing 182 n n O2G HOG2 GTP sing 183 n n O3G HOG3 GTP sing 184 n n O3B PB GTP sing 185 n n PB O1B GTP doub 186 n n PB O2B GTP sing 187 n n PB O3A GTP sing 188 n n O2B HOB2 GTP sing 189 n n O3A PA GTP sing 190 n n PA O1A GTP doub 191 n n PA O2A GTP sing 192 n n PA O5' GTP sing 193 n n O2A HOA2 GTP sing 194 n n O5' C5' GTP sing 195 n n C5' C4' GTP sing 196 n n C5' H5' GTP sing 197 n n C5' "H5''" GTP sing 198 n n C4' O4' GTP sing 199 n n C4' C3' GTP sing 200 n n C4' H4' GTP sing 201 n n O4' C1' GTP sing 202 n n C3' O3' GTP sing 203 n n C3' C2' GTP sing 204 n n C3' H3' GTP sing 205 n n O3' HO3' GTP sing 206 n n C2' O2' GTP sing 207 n n C2' C1' GTP sing 208 n n C2' H2' GTP sing 209 n n O2' HO2' GTP sing 210 n n C1' N9 GTP sing 211 n n C1' H1' GTP sing 212 n n N9 C8 GTP sing 213 n y N9 C4 GTP sing 214 n y C8 N7 GTP doub 215 n y C8 H8 GTP sing 216 n n N7 C5 GTP sing 217 n y C5 C6 GTP sing 218 n n C5 C4 GTP doub 219 n y C6 O6 GTP doub 220 n n C6 N1 GTP sing 221 n n N1 C2 GTP sing 222 n n N1 HN1 GTP sing 223 n n C2 N2 GTP sing 224 n n C2 N3 GTP doub 225 n n N2 HN21 GTP sing 226 n n N2 HN22 GTP sing 227 n n N3 C4 GTP sing 228 n n # _atom_sites.entry_id 3JAW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP A 1 501 501 GTP GTP . F 4 MG A 1 502 502 MG MG . G 5 GSP B 1 501 501 GSP GSP . H 3 GTP C 1 501 501 GTP GTP . I 4 MG C 1 502 502 MG MG . J 5 GSP D 1 501 501 GSP GSP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 3 337.944 225.184 326.828 1 28.11 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . E 3 337.396 226.473 326.257 1 27.91 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . E 3 339.453 225.168 326.847 1 28.23 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . E 3 337.306 223.939 326.254 1 28.34 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . E 3 337.563 225.114 328.379 1 27.16 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . E 3 336.999 226.368 329.203 1 26.59 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . E 3 337.486 227.731 328.763 1 26.41 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . E 3 337.294 226.071 330.65 1 27.01 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . E 3 335.445 226.266 328.899 1 25.09 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . E 3 334.388 227.041 329.793 1 23.87 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . E 3 333.878 228.131 328.89 1 24.09 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . E 3 334.943 227.481 331.127 1 23.81 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . E 3 333.318 225.853 329.945 1 22.77 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . E 3 331.972 225.961 329.499 1 21.78 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . E 3 331.052 225.846 330.696 1 21.21 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . E 3 331.269 226.92 331.618 1 20.66 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . E 3 329.617 225.983 330.242 1 21.12 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . E 3 328.78 225.191 331.091 1 21.39 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . E 3 329.334 227.449 330.431 1 20.68 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . E 3 327.94 227.702 330.598 1 21.1 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . E 3 330.108 227.753 331.699 1 20.26 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . E 3 330.513 229.178 331.781 1 19.52 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . E 3 331.369 229.832 330.984 1 19.21 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . E 3 331.53 231.112 331.404 1 18.92 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . E 3 330.794 231.284 332.508 1 18.67 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . E 3 330.511 232.381 333.46 1 18.5 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . E 3 331.019 233.506 333.319 1 18.56 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . E 3 329.693 232.142 334.487 1 18.5 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . E 3 329.111 230.941 334.664 1 18.66 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . E 3 328.295 230.753 335.73 1 18.79 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . E 3 329.336 229.889 333.837 1 18.85 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . E 3 330.15 229.998 332.764 1 18.98 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 32 #