data_3JB7 # _model_server_result.job_id jr0EU-cEjW0IeqE3zS5woA _model_server_result.datetime_utc '2024-11-22 09:08:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1301}' # _entry.id 3JB7 # _exptl.entry_id 3JB7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JB7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 D N1 G 2 t G 1 1_555 E N3 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N2 G 2 t G 1 1_555 E O2 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D O6 G 2 t G 1 1_555 E N4 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog4 D N1 G 3 t G 2 1_555 E O2 C 4 m C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N1 G 3 t G 2 1_555 E N3 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N2 G 3 t G 2 1_555 E O2 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D O6 G 3 t G 2 1_555 E N4 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D N1 G 4 t G 3 1_555 E N3 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D N2 G 4 t G 3 1_555 E O2 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D O6 G 4 t G 3 1_555 E N4 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D N1 G 5 t G 4 1_555 E N3 C 2 m C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N2 G 5 t G 4 1_555 E O2 C 2 m C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D O6 G 5 t G 4 1_555 E N4 C 2 m C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D N1 G 5 t G 4 1_555 E N3 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 D N2 G 5 t G 4 1_555 E O2 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 D O6 G 5 t G 4 1_555 E N4 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog17 D N1 G 6 t G 5 1_555 E N3 C 1 m C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 251 n n PG O2G GTP sing 252 n n PG O3G GTP sing 253 n n PG O3B GTP sing 254 n n O2G HOG2 GTP sing 255 n n O3G HOG3 GTP sing 256 n n O3B PB GTP sing 257 n n PB O1B GTP doub 258 n n PB O2B GTP sing 259 n n PB O3A GTP sing 260 n n O2B HOB2 GTP sing 261 n n O3A PA GTP sing 262 n n PA O1A GTP doub 263 n n PA O2A GTP sing 264 n n PA O5' GTP sing 265 n n O2A HOA2 GTP sing 266 n n O5' C5' GTP sing 267 n n C5' C4' GTP sing 268 n n C5' H5' GTP sing 269 n n C5' "H5''" GTP sing 270 n n C4' O4' GTP sing 271 n n C4' C3' GTP sing 272 n n C4' H4' GTP sing 273 n n O4' C1' GTP sing 274 n n C3' O3' GTP sing 275 n n C3' C2' GTP sing 276 n n C3' H3' GTP sing 277 n n O3' HO3' GTP sing 278 n n C2' O2' GTP sing 279 n n C2' C1' GTP sing 280 n n C2' H2' GTP sing 281 n n O2' HO2' GTP sing 282 n n C1' N9 GTP sing 283 n n C1' H1' GTP sing 284 n n N9 C8 GTP sing 285 n y N9 C4 GTP sing 286 n y C8 N7 GTP doub 287 n y C8 H8 GTP sing 288 n n N7 C5 GTP sing 289 n y C5 C6 GTP sing 290 n n C5 C4 GTP doub 291 n y C6 O6 GTP doub 292 n n C6 N1 GTP sing 293 n n N1 C2 GTP sing 294 n n N1 HN1 GTP sing 295 n n C2 N2 GTP sing 296 n n C2 N3 GTP doub 297 n n N2 HN21 GTP sing 298 n n N2 HN22 GTP sing 299 n n N3 C4 GTP sing 300 n n # _atom_sites.entry_id 3JB7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 GTP A 1 1301 1301 GTP GTP . H 7 CTP A 1 1302 1302 CTP CTP . I 6 GTP B 1 601 601 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 6 98.332 -3.915 155.139 1 319.41 ? PG GTP 1301 A 1 HETATM 2 O O1G GTP . . . G 6 99.804 -4.251 155.157 1 313.38 ? O1G GTP 1301 A 1 HETATM 3 O O2G GTP . . . G 6 98.091 -2.653 155.932 1 319.9 ? O2G GTP 1301 A 1 HETATM 4 O O3G GTP . . . G 6 97.544 -5.053 155.741 1 318.9 ? O3G GTP 1301 A 1 HETATM 5 O O3B GTP . . . G 6 97.882 -3.685 153.61 1 329.74 ? O3B GTP 1301 A 1 HETATM 6 P PB GTP . . . G 6 97.948 -4.885 152.537 1 335.58 ? PB GTP 1301 A 1 HETATM 7 O O1B GTP . . . G 6 97.876 -4.286 151.153 1 336.45 ? O1B GTP 1301 A 1 HETATM 8 O O2B GTP . . . G 6 99.214 -5.69 152.713 1 335.44 ? O2B GTP 1301 A 1 HETATM 9 O O3A GTP . . . G 6 96.643 -5.781 152.858 1 338.72 ? O3A GTP 1301 A 1 HETATM 10 P PA GTP . . . G 6 95.588 -6.27 151.735 1 336.42 ? PA GTP 1301 A 1 HETATM 11 O O1A GTP . . . G 6 96.197 -6.173 150.356 1 339.69 ? O1A GTP 1301 A 1 HETATM 12 O O2A GTP . . . G 6 94.3 -5.486 151.812 1 339.68 ? O2A GTP 1301 A 1 HETATM 13 O O5' GTP . . . G 6 95.329 -7.829 152.059 1 320.65 ? O5' GTP 1301 A 1 HETATM 14 C C5' GTP . . . G 6 94.474 -8.24 153.107 1 302.94 ? C5' GTP 1301 A 1 HETATM 15 C C4' GTP . . . G 6 95.297 -8.951 154.174 1 284.66 ? C4' GTP 1301 A 1 HETATM 16 O O4' GTP . . . G 6 96.237 -9.788 153.529 1 277.26 ? O4' GTP 1301 A 1 HETATM 17 C C3' GTP . . . G 6 96.062 -7.96 155.035 1 274.96 ? C3' GTP 1301 A 1 HETATM 18 O O3' GTP . . . G 6 95.586 -7.977 156.36 1 271.67 ? O3' GTP 1301 A 1 HETATM 19 C C2' GTP . . . G 6 97.505 -8.413 154.998 1 269.73 ? C2' GTP 1301 A 1 HETATM 20 O O2' GTP . . . G 6 97.909 -8.835 156.279 1 265.78 ? O2' GTP 1301 A 1 HETATM 21 C C1' GTP . . . G 6 97.548 -9.573 154.015 1 269.05 ? C1' GTP 1301 A 1 HETATM 22 N N9 GTP . . . G 6 98.433 -9.26 152.875 1 259.02 ? N9 GTP 1301 A 1 HETATM 23 C C8 GTP . . . G 6 99.762 -8.931 152.941 1 255.22 ? C8 GTP 1301 A 1 HETATM 24 N N7 GTP . . . G 6 100.219 -8.723 151.685 1 249.53 ? N7 GTP 1301 A 1 HETATM 25 C C5 GTP . . . G 6 99.206 -8.927 150.815 1 244.13 ? C5 GTP 1301 A 1 HETATM 26 C C6 GTP . . . G 6 99.13 -8.854 149.429 1 236.33 ? C6 GTP 1301 A 1 HETATM 27 O O6 GTP . . . G 6 100.12 -8.553 148.765 1 236.81 ? O6 GTP 1301 A 1 HETATM 28 N N1 GTP . . . G 6 97.935 -9.12 148.795 1 233.24 ? N1 GTP 1301 A 1 HETATM 29 C C2 GTP . . . G 6 96.824 -9.458 149.541 1 236.5 ? C2 GTP 1301 A 1 HETATM 30 N N2 GTP . . . G 6 95.669 -9.715 148.936 1 236.86 ? N2 GTP 1301 A 1 HETATM 31 N N3 GTP . . . G 6 96.907 -9.529 150.917 1 242.38 ? N3 GTP 1301 A 1 HETATM 32 C C4 GTP . . . G 6 98.077 -9.267 151.548 1 248.8 ? C4 GTP 1301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #