data_3JB7
#
_model_server_result.job_id            xYw49U8u-HjZeJ2BgxuikQ 
_model_server_result.datetime_utc      '2024-11-22 09:39:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jb7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":601}' 
#
_entry.id    3JB7 
#
_exptl.entry_id    3JB7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JB7 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JB7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 D N1 G 2 t G 1 1_555 E N3 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 D N2 G 2 t G 1 1_555 E O2 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 D O6 G 2 t G 1 1_555 E N4 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-C PAIR' hydrog4 D N1 G 3 t G 2 1_555 E O2 C 4 m C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 D N1 G 3 t G 2 1_555 E N3 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 D N2 G 3 t G 2 1_555 E O2 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 D O6 G 3 t G 2 1_555 E N4 C 5 m C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 D N1 G 4 t G 3 1_555 E N3 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 D N2 G 4 t G 3 1_555 E O2 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 D O6 G 4 t G 3 1_555 E N4 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 D N1 G 5 t G 4 1_555 E N3 C 2 m C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 D N2 G 5 t G 4 1_555 E O2 C 2 m C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 D O6 G 5 t G 4 1_555 E N4 C 2 m C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 D N1 G 5 t G 4 1_555 E N3 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 D N2 G 5 t G 4 1_555 E O2 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 D O6 G 5 t G 4 1_555 E N4 C 3 m C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-C PAIR' hydrog17 D N1 G 6 t G 5 1_555 E N3 C 1 m C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 251 n n 
PG O2G GTP sing 252 n n 
PG O3G GTP sing 253 n n 
PG O3B GTP sing 254 n n 
O2G HOG2 GTP sing 255 n n 
O3G HOG3 GTP sing 256 n n 
O3B PB GTP sing 257 n n 
PB O1B GTP doub 258 n n 
PB O2B GTP sing 259 n n 
PB O3A GTP sing 260 n n 
O2B HOB2 GTP sing 261 n n 
O3A PA GTP sing 262 n n 
PA O1A GTP doub 263 n n 
PA O2A GTP sing 264 n n 
PA O5' GTP sing 265 n n 
O2A HOA2 GTP sing 266 n n 
O5' C5' GTP sing 267 n n 
C5' C4' GTP sing 268 n n 
C5' H5' GTP sing 269 n n 
C5' "H5''" GTP sing 270 n n 
C4' O4' GTP sing 271 n n 
C4' C3' GTP sing 272 n n 
C4' H4' GTP sing 273 n n 
O4' C1' GTP sing 274 n n 
C3' O3' GTP sing 275 n n 
C3' C2' GTP sing 276 n n 
C3' H3' GTP sing 277 n n 
O3' HO3' GTP sing 278 n n 
C2' O2' GTP sing 279 n n 
C2' C1' GTP sing 280 n n 
C2' H2' GTP sing 281 n n 
O2' HO2' GTP sing 282 n n 
C1' N9 GTP sing 283 n n 
C1' H1' GTP sing 284 n n 
N9 C8 GTP sing 285 n y 
N9 C4 GTP sing 286 n y 
C8 N7 GTP doub 287 n y 
C8 H8 GTP sing 288 n n 
N7 C5 GTP sing 289 n y 
C5 C6 GTP sing 290 n n 
C5 C4 GTP doub 291 n y 
C6 O6 GTP doub 292 n n 
C6 N1 GTP sing 293 n n 
N1 C2 GTP sing 294 n n 
N1 HN1 GTP sing 295 n n 
C2 N2 GTP sing 296 n n 
C2 N3 GTP doub 297 n n 
N2 HN21 GTP sing 298 n n 
N2 HN22 GTP sing 299 n n 
N3 C4 GTP sing 300 n n 
#
_atom_sites.entry_id                     3JB7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 6 GTP A 1 1301 1301 GTP GTP . 
H 7 CTP A 1 1302 1302 CTP CTP . 
I 6 GTP B 1 601 601 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . I 6 108.645 -71.687 175.409 1 265.4 ? PG GTP 601 B 1 
HETATM 2 O O1G GTP . . . I 6 109.627 -71.276 174.339 1 264.18 ? O1G GTP 601 B 1 
HETATM 3 O O2G GTP . . . I 6 108.142 -70.458 176.128 1 260.58 ? O2G GTP 601 B 1 
HETATM 4 O O3G GTP . . . I 6 109.322 -72.612 176.389 1 266.06 ? O3G GTP 601 B 1 
HETATM 5 O O3B GTP . . . I 6 107.413 -72.446 174.703 1 282.13 ? O3B GTP 601 B 1 
HETATM 6 P PB GTP . . . I 6 107.622 -73.887 174.015 1 302.82 ? PB GTP 601 B 1 
HETATM 7 O O1B GTP . . . I 6 106.575 -74.089 172.945 1 307.05 ? O1B GTP 601 B 1 
HETATM 8 O O2B GTP . . . I 6 109.01 -73.993 173.431 1 304.87 ? O2B GTP 601 B 1 
HETATM 9 O O3A GTP . . . I 6 107.408 -74.959 175.204 1 314.31 ? O3A GTP 601 B 1 
HETATM 10 P PA GTP . . . I 6 105.95 -75.253 175.833 1 320.7 ? PA GTP 601 B 1 
HETATM 11 O O1A GTP . . . I 6 104.981 -74.174 175.411 1 324.9 ? O1A GTP 601 B 1 
HETATM 12 O O2A GTP . . . I 6 106.025 -75.341 177.339 1 322.11 ? O2A GTP 601 B 1 
HETATM 13 O O5' GTP . . . I 6 105.466 -76.667 175.225 1 319 ? O5' GTP 601 B 1 
HETATM 14 C C5' GTP . . . I 6 105.658 -77.867 175.947 1 315.14 ? C5' GTP 601 B 1 
HETATM 15 C C4' GTP . . . I 6 105.717 -79.063 175 1 311.81 ? C4' GTP 601 B 1 
HETATM 16 O O4' GTP . . . I 6 106.979 -79.167 174.371 1 310.02 ? O4' GTP 601 B 1 
HETATM 17 C C3' GTP . . . I 6 105.506 -80.382 175.724 1 306.73 ? C3' GTP 601 B 1 
HETATM 18 O O3' GTP . . . I 6 104.159 -80.786 175.644 1 304.85 ? O3' GTP 601 B 1 
HETATM 19 C C2' GTP . . . I 6 106.391 -81.363 174.984 1 303.41 ? C2' GTP 601 B 1 
HETATM 20 O O2' GTP . . . I 6 105.6 -82.249 174.226 1 301.19 ? O2' GTP 601 B 1 
HETATM 21 C C1' GTP . . . I 6 107.274 -80.521 174.069 1 301.92 ? C1' GTP 601 B 1 
HETATM 22 N N9 GTP . . . I 6 108.725 -80.756 174.268 1 288.46 ? N9 GTP 601 B 1 
HETATM 23 C C8 GTP . . . I 6 109.692 -79.848 173.921 1 282.44 ? C8 GTP 601 B 1 
HETATM 24 N N7 GTP . . . I 6 110.906 -80.358 174.214 1 277.22 ? N7 GTP 601 B 1 
HETATM 25 C C5 GTP . . . I 6 110.739 -81.591 174.732 1 274.57 ? C5 GTP 601 B 1 
HETATM 26 C C6 GTP . . . I 6 111.656 -82.53 175.184 1 269.14 ? C6 GTP 601 B 1 
HETATM 27 O O6 GTP . . . I 6 112.857 -82.277 175.15 1 266.51 ? O6 GTP 601 B 1 
HETATM 28 N N1 GTP . . . I 6 111.218 -83.738 175.679 1 267.78 ? N1 GTP 601 B 1 
HETATM 29 C C2 GTP . . . I 6 109.866 -84.005 175.715 1 267.4 ? C2 GTP 601 B 1 
HETATM 30 N N2 GTP . . . I 6 109.436 -85.171 176.189 1 262.41 ? N2 GTP 601 B 1 
HETATM 31 N N3 GTP . . . I 6 108.961 -83.067 175.259 1 273.67 ? N3 GTP 601 B 1 
HETATM 32 C C4 GTP . . . I 6 109.377 -81.868 174.772 1 279.18 ? C4 GTP 601 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           454 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           32 
#