data_3JC9
#
_model_server_result.job_id            pBj68Lw3K04vAd6Ax5ijIA 
_model_server_result.datetime_utc      '2025-02-26 12:48:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jc9 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VC","auth_seq_id":501}' 
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_entry.id    3JC9 
#
_exptl.entry_id    3JC9 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JC9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3JC9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    79-meric 
_pdbx_struct_assembly.oligomeric_count      79 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 BC N N 
? 9 DC N N 
? 9 FC N N 
? 9 HC N N 
? 9 JC N N 
? 9 LC N N 
? 9 NC N N 
? 9 PC N N 
? 9 RC N N 
? 9 TC N N 
? 9 VC N N 
? 9 XC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MEA 1 Aa MEA 1 1_555 A N THR 2 Aa THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 B C MEA 1 Ab MEA 1 1_555 B N THR 2 Ab THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 C C MEA 1 Ac MEA 1 1_555 C N THR 2 Ac THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 D C MEA 1 Ad MEA 1 1_555 D N THR 2 Ad THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 E C MEA 1 Ae MEA 1 1_555 E N THR 2 Ae THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 BC MG MG . Ma MG 501 1_555 CC O2B ATP . Ma ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
metalc ? metalc2 BC MG MG . Ma MG 501 1_555 CC O3G ATP . Ma ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc3 DC MG MG . Mb MG 501 1_555 EC O2B ATP . Mb ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc4 DC MG MG . Mb MG 501 1_555 EC O3G ATP . Mb ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc5 FC MG MG . Mc MG 501 1_555 GC O2B ATP . Mc ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc6 FC MG MG . Mc MG 501 1_555 GC O1G ATP . Mc ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc7 HC MG MG . Md MG 501 1_555 IC O1B ATP . Md ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
metalc ? metalc8 HC MG MG . Md MG 501 1_555 IC O1G ATP . Md ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc9 JC MG MG . Me MG 501 1_555 KC O1B ATP . Me ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc10 JC MG MG . Me MG 501 1_555 KC O1G ATP . Me ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc11 LC MG MG . Mf MG 501 1_555 MC O1B ATP . Mf ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
metalc ? metalc12 LC MG MG . Mf MG 501 1_555 MC O1G ATP . Mf ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc13 NC MG MG . Mg MG 501 1_555 OC O1B ATP . Mg ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc14 NC MG MG . Mg MG 501 1_555 OC O1G ATP . Mg ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc15 PC MG MG . Mh MG 501 1_555 QC O1B ATP . Mh ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc16 PC MG MG . Mh MG 501 1_555 QC O1G ATP . Mh ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc17 RC MG MG . Mi MG 501 1_555 SC O1B ATP . Mi ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc18 RC MG MG . Mi MG 501 1_555 SC O3G ATP . Mi ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc19 TC MG MG . Mj MG 501 1_555 UC O2B ATP . Mj ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc20 TC MG MG . Mj MG 501 1_555 UC O3G ATP . Mj ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc21 VC MG MG . Mk MG 501 1_555 WC O2B ATP . Mk ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc22 VC MG MG . Mk MG 501 1_555 WC O3G ATP . Mk ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc23 XC MG MG . Ml MG 501 1_555 YC O2B ATP . Ml ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc24 XC MG MG . Ml MG 501 1_555 YC O3G ATP . Ml ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3JC9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
BC 9 MG Ma 1 501 501 MG MG . 
CC 10 ATP Ma 1 502 502 ATP ATP . 
DC 9 MG Mb 1 501 501 MG MG . 
EC 10 ATP Mb 1 502 502 ATP ATP . 
FC 9 MG Mc 1 501 501 MG MG . 
GC 10 ATP Mc 1 502 502 ATP ATP . 
HC 9 MG Md 1 501 501 MG MG . 
IC 10 ATP Md 1 502 502 ATP ATP . 
JC 9 MG Me 1 501 501 MG MG . 
KC 10 ATP Me 1 502 502 ATP ATP . 
LC 9 MG Mf 1 501 501 MG MG . 
MC 10 ATP Mf 1 502 502 ATP ATP . 
NC 9 MG Mg 1 501 501 MG MG . 
OC 10 ATP Mg 1 502 502 ATP ATP . 
PC 9 MG Mh 1 501 501 MG MG . 
QC 10 ATP Mh 1 502 502 ATP ATP . 
RC 9 MG Mi 1 501 501 MG MG . 
SC 10 ATP Mi 1 502 502 ATP ATP . 
TC 9 MG Mj 1 501 501 MG MG . 
UC 10 ATP Mj 1 502 502 ATP ATP . 
VC 9 MG Mk 1 501 501 MG MG . 
WC 10 ATP Mk 1 502 502 ATP ATP . 
XC 9 MG Ml 1 501 501 MG MG . 
YC 10 ATP Ml 1 502 502 ATP ATP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         VC 
_atom_site.label_entity_id       9 
_atom_site.Cartn_x               -229.86 
_atom_site.Cartn_y               -79.869 
_atom_site.Cartn_z               -141.827 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        0 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          Mk 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    130 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#