data_3JC9
#
_model_server_result.job_id            dLsSJ_dgjJ5BrcVe1oDMoQ 
_model_server_result.datetime_utc      '2025-02-26 12:47:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jc9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GC","auth_seq_id":502}' 
#
_entry.id    3JC9 
#
_exptl.entry_id    3JC9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JC9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JC9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    79-meric 
_pdbx_struct_assembly.oligomeric_count      79 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 CC N N 
? 10 EC N N 
? 10 GC N N 
? 10 IC N N 
? 10 KC N N 
? 10 MC N N 
? 10 OC N N 
? 10 QC N N 
? 10 SC N N 
? 10 UC N N 
? 10 WC N N 
? 10 YC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MEA 1 Aa MEA 1 1_555 A N THR 2 Aa THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 B C MEA 1 Ab MEA 1 1_555 B N THR 2 Ab THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 C C MEA 1 Ac MEA 1 1_555 C N THR 2 Ac THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 D C MEA 1 Ad MEA 1 1_555 D N THR 2 Ad THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 E C MEA 1 Ae MEA 1 1_555 E N THR 2 Ae THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 BC MG MG . Ma MG 501 1_555 CC O2B ATP . Ma ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
metalc ? metalc2 BC MG MG . Ma MG 501 1_555 CC O3G ATP . Ma ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc3 DC MG MG . Mb MG 501 1_555 EC O2B ATP . Mb ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc4 DC MG MG . Mb MG 501 1_555 EC O3G ATP . Mb ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc5 FC MG MG . Mc MG 501 1_555 GC O2B ATP . Mc ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc6 FC MG MG . Mc MG 501 1_555 GC O1G ATP . Mc ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc7 HC MG MG . Md MG 501 1_555 IC O1B ATP . Md ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
metalc ? metalc8 HC MG MG . Md MG 501 1_555 IC O1G ATP . Md ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc9 JC MG MG . Me MG 501 1_555 KC O1B ATP . Me ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc10 JC MG MG . Me MG 501 1_555 KC O1G ATP . Me ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc11 LC MG MG . Mf MG 501 1_555 MC O1B ATP . Mf ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
metalc ? metalc12 LC MG MG . Mf MG 501 1_555 MC O1G ATP . Mf ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc13 NC MG MG . Mg MG 501 1_555 OC O1B ATP . Mg ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc14 NC MG MG . Mg MG 501 1_555 OC O1G ATP . Mg ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc15 PC MG MG . Mh MG 501 1_555 QC O1B ATP . Mh ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc16 PC MG MG . Mh MG 501 1_555 QC O1G ATP . Mh ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc17 RC MG MG . Mi MG 501 1_555 SC O1B ATP . Mi ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc18 RC MG MG . Mi MG 501 1_555 SC O3G ATP . Mi ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc19 TC MG MG . Mj MG 501 1_555 UC O2B ATP . Mj ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc20 TC MG MG . Mj MG 501 1_555 UC O3G ATP . Mj ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc21 VC MG MG . Mk MG 501 1_555 WC O2B ATP . Mk ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc22 VC MG MG . Mk MG 501 1_555 WC O3G ATP . Mk ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc23 XC MG MG . Ml MG 501 1_555 YC O2B ATP . Ml ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc24 XC MG MG . Ml MG 501 1_555 YC O3G ATP . Ml ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     3JC9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
BC 9 MG Ma 1 501 501 MG MG . 
CC 10 ATP Ma 1 502 502 ATP ATP . 
DC 9 MG Mb 1 501 501 MG MG . 
EC 10 ATP Mb 1 502 502 ATP ATP . 
FC 9 MG Mc 1 501 501 MG MG . 
GC 10 ATP Mc 1 502 502 ATP ATP . 
HC 9 MG Md 1 501 501 MG MG . 
IC 10 ATP Md 1 502 502 ATP ATP . 
JC 9 MG Me 1 501 501 MG MG . 
KC 10 ATP Me 1 502 502 ATP ATP . 
LC 9 MG Mf 1 501 501 MG MG . 
MC 10 ATP Mf 1 502 502 ATP ATP . 
NC 9 MG Mg 1 501 501 MG MG . 
OC 10 ATP Mg 1 502 502 ATP ATP . 
PC 9 MG Mh 1 501 501 MG MG . 
QC 10 ATP Mh 1 502 502 ATP ATP . 
RC 9 MG Mi 1 501 501 MG MG . 
SC 10 ATP Mi 1 502 502 ATP ATP . 
TC 9 MG Mj 1 501 501 MG MG . 
UC 10 ATP Mj 1 502 502 ATP ATP . 
VC 9 MG Mk 1 501 501 MG MG . 
WC 10 ATP Mk 1 502 502 ATP ATP . 
XC 9 MG Ml 1 501 501 MG MG . 
YC 10 ATP Ml 1 502 502 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . GC 10 -128.38 -79.999 -221.523 1 0 ? PG ATP 502 Mc 1 
HETATM 2 O O1G ATP . . . GC 10 -129.86 -79.72 -221.657 1 0 ? O1G ATP 502 Mc 1 
HETATM 3 O O2G ATP . . . GC 10 -127.55 -78.774 -221.225 1 0 ? O2G ATP 502 Mc 1 
HETATM 4 O O3G ATP . . . GC 10 -128.1 -81.192 -220.637 1 0 ? O3G ATP 502 Mc 1 
HETATM 5 P PB ATP . . . GC 10 -128.71 -80.342 -224.378 1 0 ? PB ATP 502 Mc 1 
HETATM 6 O O1B ATP . . . GC 10 -128.04 -79.311 -225.256 1 0 ? O1B ATP 502 Mc 1 
HETATM 7 O O2B ATP . . . GC 10 -130.2 -80.277 -224.18 1 0 ? O2B ATP 502 Mc 1 
HETATM 8 O O3B ATP . . . GC 10 -127.88 -80.461 -222.99 1 0 ? O3B ATP 502 Mc 1 
HETATM 9 P PA ATP . . . GC 10 -128.84 -82.029 -226.57 1 0 ? PA ATP 502 Mc 1 
HETATM 10 O O1A ATP . . . GC 10 -128.65 -80.745 -227.342 1 0 ? O1A ATP 502 Mc 1 
HETATM 11 O O2A ATP . . . GC 10 -130.18 -82.729 -226.603 1 0 ? O2A ATP 502 Mc 1 
HETATM 12 O O3A ATP . . . GC 10 -128.41 -81.766 -225.049 1 0 ? O3A ATP 502 Mc 1 
HETATM 13 O O5' ATP . . . GC 10 -127.69 -83.054 -226.998 1 0 ? O5' ATP 502 Mc 1 
HETATM 14 C C5' ATP . . . GC 10 -126.35 -82.586 -227.049 1 0 ? C5' ATP 502 Mc 1 
HETATM 15 C C4' ATP . . . GC 10 -125.44 -83.679 -226.513 1 0 ? C4' ATP 502 Mc 1 
HETATM 16 O O4' ATP . . . GC 10 -125.76 -84.911 -227.161 1 0 ? O4' ATP 502 Mc 1 
HETATM 17 C C3' ATP . . . GC 10 -124 -83.348 -226.822 1 0 ? C3' ATP 502 Mc 1 
HETATM 18 O O3' ATP . . . GC 10 -123.21 -83.601 -225.66 1 0 ? O3' ATP 502 Mc 1 
HETATM 19 C C2' ATP . . . GC 10 -123.61 -84.312 -227.92 1 0 ? C2' ATP 502 Mc 1 
HETATM 20 O O2' ATP . . . GC 10 -122.26 -84.728 -227.738 1 0 ? O2' ATP 502 Mc 1 
HETATM 21 C C1' ATP . . . GC 10 -124.59 -85.464 -227.764 1 0 ? C1' ATP 502 Mc 1 
HETATM 22 N N9 ATP . . . GC 10 -124.94 -86.056 -229.076 1 0 ? N9 ATP 502 Mc 1 
HETATM 23 C C8 ATP . . . GC 10 -125.65 -85.461 -230.054 1 0 ? C8 ATP 502 Mc 1 
HETATM 24 N N7 ATP . . . GC 10 -125.79 -86.286 -231.124 1 0 ? N7 ATP 502 Mc 1 
HETATM 25 C C5 ATP . . . GC 10 -125.16 -87.438 -230.831 1 0 ? C5 ATP 502 Mc 1 
HETATM 26 C C6 ATP . . . GC 10 -124.92 -88.731 -231.513 1 0 ? C6 ATP 502 Mc 1 
HETATM 27 N N6 ATP . . . GC 10 -125.4 -88.961 -232.761 1 0 ? N6 ATP 502 Mc 1 
HETATM 28 N N1 ATP . . . GC 10 -124.21 -89.66 -230.849 1 0 ? N1 ATP 502 Mc 1 
HETATM 29 C C2 ATP . . . GC 10 -123.73 -89.45 -229.61 1 0 ? C2 ATP 502 Mc 1 
HETATM 30 N N3 ATP . . . GC 10 -123.91 -88.306 -228.931 1 0 ? N3 ATP 502 Mc 1 
HETATM 31 C C4 ATP . . . GC 10 -124.6 -87.28 -229.479 1 0 ? C4 ATP 502 Mc 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    154 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#