data_3JD7 # _model_server_result.job_id Lj7LgBDyfCCk2YJn6hm7pg _model_server_result.datetime_utc '2024-12-21 16:03:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3JD7 # _exptl.entry_id 3JD7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JD7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-meric 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 (1-60) A,B,C,D,E 2 1 A,B,C,D,E 3 (1-5) A,B,C,D,E 4 (1,2,6,10,23,24) A,B,C,D,E 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0 0 0 3 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 0 0 0 4 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 0 0 0 5 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0 0 0 6 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 0 0 0 7 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0 0 0 9 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0 0 0 10 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 0 0 0 11 'point symmetry operation' ? ? 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0 0 0 12 'point symmetry operation' ? ? 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0 0 0 13 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 0 0 14 'point symmetry operation' ? ? -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 0 0 0 15 'point symmetry operation' ? ? -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 0 0 0 16 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 0 0 0 17 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 0 0 0 18 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0 0 0 19 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 0 0 20 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0 0 0 21 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 0 0 0 22 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 23 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 0 0 0 24 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0 0 0 25 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0 0 0 26 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 0 0 27 'point symmetry operation' ? ? 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0 0 0 28 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0 0 0 29 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 0 0 0 30 'point symmetry operation' ? ? -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 0 0 0 31 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 0 0 0 32 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0 0 0 33 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0 0 0 34 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 0 0 0 35 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 0 0 0 36 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0 0 0 37 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 0 0 0 38 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 39 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 0 0 0 40 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0 0 0 41 'point symmetry operation' ? ? -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 0 0 0 42 'point symmetry operation' ? ? 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0 0 0 43 'point symmetry operation' ? ? 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0 0 0 44 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 45 'point symmetry operation' ? ? -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 0 0 0 46 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 0 0 0 47 'point symmetry operation' ? ? -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 0 0 0 48 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 49 'point symmetry operation' ? ? 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0 0 0 50 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0 0 0 51 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0 0 0 52 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 0 0 0 53 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 0 0 0 54 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 0 0 0 55 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0 0 0 56 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 0 0 0 57 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0 0 0 58 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0 0 0 59 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 0 0 0 60 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 258 n n C1 O2 PLM doub 259 n n C1 C2 PLM sing 260 n n O1 H PLM sing 261 n n C2 C3 PLM sing 262 n n C2 H21 PLM sing 263 n n C2 H22 PLM sing 264 n n C3 C4 PLM sing 265 n n C3 H31 PLM sing 266 n n C3 H32 PLM sing 267 n n C4 C5 PLM sing 268 n n C4 H41 PLM sing 269 n n C4 H42 PLM sing 270 n n C5 C6 PLM sing 271 n n C5 H51 PLM sing 272 n n C5 H52 PLM sing 273 n n C6 C7 PLM sing 274 n n C6 H61 PLM sing 275 n n C6 H62 PLM sing 276 n n C7 C8 PLM sing 277 n n C7 H71 PLM sing 278 n n C7 H72 PLM sing 279 n n C8 C9 PLM sing 280 n n C8 H81 PLM sing 281 n n C8 H82 PLM sing 282 n n C9 CA PLM sing 283 n n C9 H91 PLM sing 284 n n C9 H92 PLM sing 285 n n CA CB PLM sing 286 n n CA HA1 PLM sing 287 n n CA HA2 PLM sing 288 n n CB CC PLM sing 289 n n CB HB1 PLM sing 290 n n CB HB2 PLM sing 291 n n CC CD PLM sing 292 n n CC HC1 PLM sing 293 n n CC HC2 PLM sing 294 n n CD CE PLM sing 295 n n CD HD1 PLM sing 296 n n CD HD2 PLM sing 297 n n CE CF PLM sing 298 n n CE HE1 PLM sing 299 n n CE HE2 PLM sing 300 n n CF CG PLM sing 301 n n CF HF1 PLM sing 302 n n CF HF2 PLM sing 303 n n CG HG1 PLM sing 304 n n CG HG2 PLM sing 305 n n CG HG3 PLM sing 306 n n # _atom_sites.entry_id 3JD7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id PLM _pdbx_nonpoly_scheme.pdb_strand_id 1 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 282 _pdbx_nonpoly_scheme.pdb_mon_id PLM _pdbx_nonpoly_scheme.auth_mon_id PLM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . E 5 -4.341 35.196 128.773 1 0 ? C1 PLM 301 1 1 HETATM 2 O O1 PLM . . . E 5 -5.189 35.165 129.72 1 0 ? O1 PLM 301 1 1 HETATM 3 O O2 PLM . . . E 5 -3.859 34.147 128.31 1 0 ? O2 PLM 301 1 1 HETATM 4 C C2 PLM . . . E 5 -4.021 36.539 128.173 1 0 ? C2 PLM 301 1 1 HETATM 5 C C3 PLM . . . E 5 -5.111 37.573 127.668 1 0 ? C3 PLM 301 1 1 HETATM 6 C C4 PLM . . . E 5 -4.587 38.286 126.395 1 0 ? C4 PLM 301 1 1 HETATM 7 C C5 PLM . . . E 5 -5.069 39.567 125.733 1 0 ? C5 PLM 301 1 1 HETATM 8 C C6 PLM . . . E 5 -3.779 40.178 125.215 1 0 ? C6 PLM 301 1 1 HETATM 9 C C7 PLM . . . E 5 -2.265 40.366 125.54 1 0 ? C7 PLM 301 1 1 HETATM 10 C C8 PLM . . . E 5 -1.894 41.873 125.259 1 0 ? C8 PLM 301 1 1 HETATM 11 C C9 PLM . . . E 5 -0.427 42.221 125.437 1 0 ? C9 PLM 301 1 1 HETATM 12 C CA PLM . . . E 5 -0.185 43.72 125.465 1 0 ? CA PLM 301 1 1 HETATM 13 C CB PLM . . . E 5 1.147 44.183 124.9 1 0 ? CB PLM 301 1 1 HETATM 14 C CC PLM . . . E 5 1.08 45.716 124.656 1 0 ? CC PLM 301 1 1 HETATM 15 C CD PLM . . . E 5 2.481 46.089 124.132 1 0 ? CD PLM 301 1 1 HETATM 16 C CE PLM . . . E 5 2.779 47.563 124.454 1 0 ? CE PLM 301 1 1 HETATM 17 C CF PLM . . . E 5 4.104 47.956 123.788 1 0 ? CF PLM 301 1 1 HETATM 18 C CG PLM . . . E 5 4.328 49.417 124.206 1 0 ? CG PLM 301 1 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #