data_3JQ3 # _model_server_result.job_id t9yE9-Wmu31ueNUcAOveFQ _model_server_result.datetime_utc '2024-11-04 23:02:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 3JQ3 # _exptl.entry_id 3JQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JQ3 _cell.length_a 67.692 _cell.length_b 77.986 _cell.length_c 141.122 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 70.561 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3JQ3 _atom_sites.fract_transf_matrix[1][1] 0.014773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 400 400 ADP ADP . C 3 HOH A 1 367 1 HOH HOH . C 3 HOH A 2 368 2 HOH HOH . C 3 HOH A 3 369 3 HOH HOH . C 3 HOH A 4 370 4 HOH HOH . C 3 HOH A 5 371 5 HOH HOH . C 3 HOH A 6 372 6 HOH HOH . C 3 HOH A 7 373 7 HOH HOH . C 3 HOH A 8 374 8 HOH HOH . C 3 HOH A 9 375 9 HOH HOH . C 3 HOH A 10 376 10 HOH HOH . C 3 HOH A 11 377 11 HOH HOH . C 3 HOH A 12 378 12 HOH HOH . C 3 HOH A 13 379 13 HOH HOH . C 3 HOH A 14 380 14 HOH HOH . C 3 HOH A 15 381 15 HOH HOH . C 3 HOH A 16 382 16 HOH HOH . C 3 HOH A 17 383 17 HOH HOH . C 3 HOH A 18 384 18 HOH HOH . C 3 HOH A 19 385 19 HOH HOH . C 3 HOH A 20 386 20 HOH HOH . C 3 HOH A 21 387 21 HOH HOH . C 3 HOH A 22 388 22 HOH HOH . C 3 HOH A 23 389 23 HOH HOH . C 3 HOH A 24 390 24 HOH HOH . C 3 HOH A 25 391 25 HOH HOH . C 3 HOH A 26 392 26 HOH HOH . C 3 HOH A 27 393 27 HOH HOH . C 3 HOH A 28 394 28 HOH HOH . C 3 HOH A 29 395 29 HOH HOH . C 3 HOH A 30 396 30 HOH HOH . C 3 HOH A 31 397 31 HOH HOH . C 3 HOH A 32 398 32 HOH HOH . C 3 HOH A 33 399 33 HOH HOH . C 3 HOH A 34 401 34 HOH HOH . C 3 HOH A 35 402 35 HOH HOH . C 3 HOH A 36 403 36 HOH HOH . C 3 HOH A 37 404 37 HOH HOH . C 3 HOH A 38 405 38 HOH HOH . C 3 HOH A 39 406 39 HOH HOH . C 3 HOH A 40 407 40 HOH HOH . C 3 HOH A 41 408 41 HOH HOH . C 3 HOH A 42 409 42 HOH HOH . C 3 HOH A 43 410 43 HOH HOH . C 3 HOH A 44 411 44 HOH HOH . C 3 HOH A 45 412 45 HOH HOH . C 3 HOH A 46 413 46 HOH HOH . C 3 HOH A 47 414 47 HOH HOH . C 3 HOH A 48 415 48 HOH HOH . C 3 HOH A 49 416 49 HOH HOH . C 3 HOH A 50 417 50 HOH HOH . C 3 HOH A 51 418 51 HOH HOH . C 3 HOH A 52 419 52 HOH HOH . C 3 HOH A 53 420 53 HOH HOH . C 3 HOH A 54 421 54 HOH HOH . C 3 HOH A 55 422 55 HOH HOH . C 3 HOH A 56 423 56 HOH HOH . C 3 HOH A 57 424 57 HOH HOH . C 3 HOH A 58 425 58 HOH HOH . C 3 HOH A 59 426 60 HOH HOH . C 3 HOH A 60 427 61 HOH HOH . C 3 HOH A 61 428 62 HOH HOH . C 3 HOH A 62 429 63 HOH HOH . C 3 HOH A 63 430 64 HOH HOH . C 3 HOH A 64 431 65 HOH HOH . C 3 HOH A 65 432 66 HOH HOH . C 3 HOH A 66 433 67 HOH HOH . C 3 HOH A 67 434 68 HOH HOH . C 3 HOH A 68 435 69 HOH HOH . C 3 HOH A 69 436 71 HOH HOH . C 3 HOH A 70 437 72 HOH HOH . C 3 HOH A 71 438 73 HOH HOH . C 3 HOH A 72 439 76 HOH HOH . C 3 HOH A 73 440 77 HOH HOH . C 3 HOH A 74 441 79 HOH HOH . C 3 HOH A 75 442 80 HOH HOH . C 3 HOH A 76 443 81 HOH HOH . C 3 HOH A 77 444 82 HOH HOH . C 3 HOH A 78 445 83 HOH HOH . C 3 HOH A 79 446 84 HOH HOH . C 3 HOH A 80 447 86 HOH HOH . C 3 HOH A 81 448 87 HOH HOH . C 3 HOH A 82 449 88 HOH HOH . C 3 HOH A 83 450 90 HOH HOH . C 3 HOH A 84 451 91 HOH HOH . C 3 HOH A 85 452 92 HOH HOH . C 3 HOH A 86 453 93 HOH HOH . C 3 HOH A 87 454 94 HOH HOH . C 3 HOH A 88 455 95 HOH HOH . C 3 HOH A 89 456 96 HOH HOH . C 3 HOH A 90 457 97 HOH HOH . C 3 HOH A 91 458 98 HOH HOH . C 3 HOH A 92 459 100 HOH HOH . C 3 HOH A 93 460 102 HOH HOH . C 3 HOH A 94 461 103 HOH HOH . C 3 HOH A 95 462 104 HOH HOH . C 3 HOH A 96 463 105 HOH HOH . C 3 HOH A 97 464 106 HOH HOH . C 3 HOH A 98 465 107 HOH HOH . C 3 HOH A 99 466 109 HOH HOH . C 3 HOH A 100 467 110 HOH HOH . C 3 HOH A 101 468 111 HOH HOH . C 3 HOH A 102 469 113 HOH HOH . C 3 HOH A 103 470 114 HOH HOH . C 3 HOH A 104 471 116 HOH HOH . C 3 HOH A 105 472 117 HOH HOH . C 3 HOH A 106 473 118 HOH HOH . C 3 HOH A 107 474 120 HOH HOH . C 3 HOH A 108 475 121 HOH HOH . C 3 HOH A 109 476 122 HOH HOH . C 3 HOH A 110 477 125 HOH HOH . C 3 HOH A 111 478 128 HOH HOH . C 3 HOH A 112 479 129 HOH HOH . C 3 HOH A 113 480 130 HOH HOH . C 3 HOH A 114 481 133 HOH HOH . C 3 HOH A 115 482 134 HOH HOH . C 3 HOH A 116 483 135 HOH HOH . C 3 HOH A 117 484 136 HOH HOH . C 3 HOH A 118 485 137 HOH HOH . C 3 HOH A 119 486 138 HOH HOH . C 3 HOH A 120 487 139 HOH HOH . C 3 HOH A 121 488 140 HOH HOH . C 3 HOH A 122 489 142 HOH HOH . C 3 HOH A 123 490 143 HOH HOH . C 3 HOH A 124 491 145 HOH HOH . C 3 HOH A 125 492 146 HOH HOH . C 3 HOH A 126 493 148 HOH HOH . C 3 HOH A 127 494 149 HOH HOH . C 3 HOH A 128 495 151 HOH HOH . C 3 HOH A 129 496 152 HOH HOH . C 3 HOH A 130 497 153 HOH HOH . C 3 HOH A 131 498 154 HOH HOH . C 3 HOH A 132 499 155 HOH HOH . C 3 HOH A 133 500 156 HOH HOH . C 3 HOH A 134 502 158 HOH HOH . C 3 HOH A 135 503 159 HOH HOH . C 3 HOH A 136 504 160 HOH HOH . C 3 HOH A 137 505 161 HOH HOH . C 3 HOH A 138 506 163 HOH HOH . C 3 HOH A 139 507 164 HOH HOH . C 3 HOH A 140 508 165 HOH HOH . C 3 HOH A 141 509 167 HOH HOH . C 3 HOH A 142 510 169 HOH HOH . C 3 HOH A 143 511 172 HOH HOH . C 3 HOH A 144 512 173 HOH HOH . C 3 HOH A 145 513 175 HOH HOH . C 3 HOH A 146 514 176 HOH HOH . C 3 HOH A 147 515 177 HOH HOH . C 3 HOH A 148 516 178 HOH HOH . C 3 HOH A 149 517 179 HOH HOH . C 3 HOH A 150 518 180 HOH HOH . C 3 HOH A 151 520 182 HOH HOH . C 3 HOH A 152 521 183 HOH HOH . C 3 HOH A 153 522 184 HOH HOH . C 3 HOH A 154 523 185 HOH HOH . C 3 HOH A 155 524 186 HOH HOH . C 3 HOH A 156 525 187 HOH HOH . C 3 HOH A 157 526 189 HOH HOH . C 3 HOH A 158 527 190 HOH HOH . C 3 HOH A 159 528 191 HOH HOH . C 3 HOH A 160 529 192 HOH HOH . C 3 HOH A 161 530 193 HOH HOH . C 3 HOH A 162 531 194 HOH HOH . C 3 HOH A 163 532 195 HOH HOH . C 3 HOH A 164 533 196 HOH HOH . C 3 HOH A 165 534 198 HOH HOH . C 3 HOH A 166 536 204 HOH HOH . C 3 HOH A 167 537 205 HOH HOH . C 3 HOH A 168 538 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 12.97 14.973 18.15 1 64.42 ? PB ADP 400 A 1 HETATM 2 O O1B ADP . . . B 2 11.884 14.628 19.142 1 66.86 ? O1B ADP 400 A 1 HETATM 3 O O2B ADP . . . B 2 14.328 15.218 18.759 1 66.68 ? O2B ADP 400 A 1 HETATM 4 O O3B ADP . . . B 2 12.994 14.081 16.934 1 63.47 ? O3B ADP 400 A 1 HETATM 5 P PA ADP . . . B 2 12.023 17.621 18.491 1 64.51 ? PA ADP 400 A 1 HETATM 6 O O1A ADP . . . B 2 11.49 17.058 19.787 1 66.84 ? O1A ADP 400 A 1 HETATM 7 O O2A ADP . . . B 2 11.148 18.502 17.63 1 63.36 ? O2A ADP 400 A 1 HETATM 8 O O3A ADP . . . B 2 12.536 16.408 17.559 1 54.52 ? O3A ADP 400 A 1 HETATM 9 O O5' ADP . . . B 2 13.363 18.458 18.803 1 78.87 ? O5' ADP 400 A 1 HETATM 10 C C5' ADP . . . B 2 14.166 18.205 19.955 1 76.94 ? C5' ADP 400 A 1 HETATM 11 C C4' ADP . . . B 2 15.244 19.28 20.034 1 74.74 ? C4' ADP 400 A 1 HETATM 12 O O4' ADP . . . B 2 16.237 19.07 19.025 1 73.65 ? O4' ADP 400 A 1 HETATM 13 C C3' ADP . . . B 2 14.659 20.665 19.804 1 74.44 ? C3' ADP 400 A 1 HETATM 14 O O3' ADP . . . B 2 14.839 21.468 20.975 1 75.1 ? O3' ADP 400 A 1 HETATM 15 C C2' ADP . . . B 2 15.447 21.266 18.657 1 73.17 ? C2' ADP 400 A 1 HETATM 16 O O2' ADP . . . B 2 15.92 22.57 19.007 1 73.14 ? O2' ADP 400 A 1 HETATM 17 C C1' ADP . . . B 2 16.614 20.319 18.441 1 71.79 ? C1' ADP 400 A 1 HETATM 18 N N9 ADP . . . B 2 16.925 20.166 16.995 1 68.63 ? N9 ADP 400 A 1 HETATM 19 C C8 ADP . . . B 2 16.173 19.527 16.079 1 67.3 ? C8 ADP 400 A 1 HETATM 20 N N7 ADP . . . B 2 16.753 19.577 14.85 1 65.39 ? N7 ADP 400 A 1 HETATM 21 C C5 ADP . . . B 2 17.906 20.261 14.969 1 63.76 ? C5 ADP 400 A 1 HETATM 22 C C6 ADP . . . B 2 19.004 20.677 14.063 1 60.83 ? C6 ADP 400 A 1 HETATM 23 N N6 ADP . . . B 2 18.993 20.369 12.743 1 48.45 ? N6 ADP 400 A 1 HETATM 24 N N1 ADP . . . B 2 20.022 21.381 14.601 1 62.09 ? N1 ADP 400 A 1 HETATM 25 C C2 ADP . . . B 2 20.053 21.7 15.91 1 64.1 ? C2 ADP 400 A 1 HETATM 26 N N3 ADP . . . B 2 19.094 21.354 16.787 1 65.16 ? N3 ADP 400 A 1 HETATM 27 C C4 ADP . . . B 2 18.012 20.647 16.385 1 66 ? C4 ADP 400 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #