data_3JQR # _model_server_result.job_id 8fKeI55LsbeCb3SbZ2IsSg _model_server_result.datetime_utc '2025-02-18 04:20:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":415}' # _entry.id 3JQR # _exptl.entry_id 3JQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118 _cell.angle_gamma 90 _cell.entry_id 3JQR _cell.length_a 82.109 _cell.length_b 96.689 _cell.length_c 46.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -21.994743 0 41.366095 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 99 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 99 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 99 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 99 _struct_conn.ptnr2_symmetry 2_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.246 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3JQR _atom_sites.fract_transf_matrix[1][1] 0.012179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006474 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 415 415 FAD FAD . C 3 HOH A 1 317 1 HOH HOH . C 3 HOH A 2 318 2 HOH HOH . C 3 HOH A 3 319 3 HOH HOH . C 3 HOH A 4 320 4 HOH HOH . C 3 HOH A 5 321 5 HOH HOH . C 3 HOH A 6 322 6 HOH HOH . C 3 HOH A 7 323 7 HOH HOH . C 3 HOH A 8 324 9 HOH HOH . C 3 HOH A 9 325 10 HOH HOH . C 3 HOH A 10 326 11 HOH HOH . C 3 HOH A 11 327 12 HOH HOH . C 3 HOH A 12 328 13 HOH HOH . C 3 HOH A 13 329 14 HOH HOH . C 3 HOH A 14 330 15 HOH HOH . C 3 HOH A 15 331 16 HOH HOH . C 3 HOH A 16 332 17 HOH HOH . C 3 HOH A 17 333 18 HOH HOH . C 3 HOH A 18 334 19 HOH HOH . C 3 HOH A 19 335 20 HOH HOH . C 3 HOH A 20 336 21 HOH HOH . C 3 HOH A 21 337 22 HOH HOH . C 3 HOH A 22 338 23 HOH HOH . C 3 HOH A 23 339 24 HOH HOH . C 3 HOH A 24 340 25 HOH HOH . C 3 HOH A 25 341 26 HOH HOH . C 3 HOH A 26 342 28 HOH HOH . C 3 HOH A 27 343 29 HOH HOH . C 3 HOH A 28 344 30 HOH HOH . C 3 HOH A 29 345 31 HOH HOH . C 3 HOH A 30 346 32 HOH HOH . C 3 HOH A 31 347 33 HOH HOH . C 3 HOH A 32 348 35 HOH HOH . C 3 HOH A 33 349 37 HOH HOH . C 3 HOH A 34 350 38 HOH HOH . C 3 HOH A 35 351 39 HOH HOH . C 3 HOH A 36 352 41 HOH HOH . C 3 HOH A 37 353 42 HOH HOH . C 3 HOH A 38 354 46 HOH HOH . C 3 HOH A 39 355 47 HOH HOH . C 3 HOH A 40 356 51 HOH HOH . C 3 HOH A 41 357 55 HOH HOH . C 3 HOH A 42 358 57 HOH HOH . C 3 HOH A 43 359 61 HOH HOH . C 3 HOH A 44 360 62 HOH HOH . C 3 HOH A 45 361 63 HOH HOH . C 3 HOH A 46 362 2 HOH HOH . C 3 HOH A 47 363 3 HOH HOH . C 3 HOH A 48 364 5 HOH HOH . C 3 HOH A 49 365 7 HOH HOH . C 3 HOH A 50 366 9 HOH HOH . C 3 HOH A 51 367 10 HOH HOH . C 3 HOH A 52 368 16 HOH HOH . C 3 HOH A 53 369 17 HOH HOH . C 3 HOH A 54 370 18 HOH HOH . C 3 HOH A 55 371 20 HOH HOH . C 3 HOH A 56 372 22 HOH HOH . C 3 HOH A 57 373 27 HOH HOH . C 3 HOH A 58 374 28 HOH HOH . C 3 HOH A 59 375 30 HOH HOH . C 3 HOH A 60 376 32 HOH HOH . C 3 HOH A 61 377 33 HOH HOH . C 3 HOH A 62 378 37 HOH HOH . C 3 HOH A 63 379 39 HOH HOH . C 3 HOH A 64 380 40 HOH HOH . C 3 HOH A 65 381 43 HOH HOH . C 3 HOH A 66 382 46 HOH HOH . C 3 HOH A 67 383 49 HOH HOH . C 3 HOH A 68 384 51 HOH HOH . C 3 HOH A 69 385 53 HOH HOH . C 3 HOH A 70 386 56 HOH HOH . C 3 HOH A 71 387 62 HOH HOH . C 3 HOH A 72 388 63 HOH HOH . C 3 HOH A 73 389 66 HOH HOH . C 3 HOH A 74 390 67 HOH HOH . C 3 HOH A 75 391 74 HOH HOH . C 3 HOH A 76 392 75 HOH HOH . C 3 HOH A 77 393 77 HOH HOH . C 3 HOH A 78 394 78 HOH HOH . C 3 HOH A 79 395 80 HOH HOH . C 3 HOH A 80 396 81 HOH HOH . C 3 HOH A 81 397 86 HOH HOH . C 3 HOH A 82 398 88 HOH HOH . C 3 HOH A 83 399 89 HOH HOH . C 3 HOH A 84 400 90 HOH HOH . C 3 HOH A 85 401 91 HOH HOH . C 3 HOH A 86 402 92 HOH HOH . C 3 HOH A 87 403 99 HOH HOH . C 3 HOH A 88 404 100 HOH HOH . C 3 HOH A 89 405 102 HOH HOH . C 3 HOH A 90 406 104 HOH HOH . C 3 HOH A 91 407 105 HOH HOH . C 3 HOH A 92 408 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -15.829 7.347 24.202 1 28.69 ? PA FAD 415 A 1 HETATM 2 O O1A FAD . . . B 2 -14.995 7.549 22.997 1 27.82 ? O1A FAD 415 A 1 HETATM 3 O O2A FAD . . . B 2 -15.954 8.442 25.186 1 31.24 ? O2A FAD 415 A 1 HETATM 4 O O5B FAD . . . B 2 -15.31 6.03 24.959 1 32.81 ? O5B FAD 415 A 1 HETATM 5 C C5B FAD . . . B 2 -15.352 4.762 24.298 1 40.41 ? C5B FAD 415 A 1 HETATM 6 C C4B FAD . . . B 2 -14.068 3.962 24.547 1 45.45 ? C4B FAD 415 A 1 HETATM 7 O O4B FAD . . . B 2 -12.908 4.706 24.08 1 46.25 ? O4B FAD 415 A 1 HETATM 8 C C3B FAD . . . B 2 -13.873 3.794 26.051 1 47.71 ? C3B FAD 415 A 1 HETATM 9 O O3B FAD . . . B 2 -14.53 2.598 26.483 1 47.66 ? O3B FAD 415 A 1 HETATM 10 C C2B FAD . . . B 2 -12.366 3.62 26.156 1 49.08 ? C2B FAD 415 A 1 HETATM 11 O O2B FAD . . . B 2 -12.017 2.267 25.842 1 49.99 ? O2B FAD 415 A 1 HETATM 12 C C1B FAD . . . B 2 -11.832 4.55 25.059 1 48.34 ? C1B FAD 415 A 1 HETATM 13 N N9A FAD . . . B 2 -11.469 5.896 25.594 1 48.8 ? N9A FAD 415 A 1 HETATM 14 C C8A FAD . . . B 2 -12.274 6.714 26.276 1 48.85 ? C8A FAD 415 A 1 HETATM 15 N N7A FAD . . . B 2 -11.612 7.83 26.586 1 49.07 ? N7A FAD 415 A 1 HETATM 16 C C5A FAD . . . B 2 -10.381 7.723 26.098 1 48.74 ? C5A FAD 415 A 1 HETATM 17 C C6A FAD . . . B 2 -9.268 8.553 26.11 1 49.69 ? C6A FAD 415 A 1 HETATM 18 N N6A FAD . . . B 2 -9.319 9.741 26.707 1 49.39 ? N6A FAD 415 A 1 HETATM 19 N N1A FAD . . . B 2 -8.141 8.14 25.51 1 49.6 ? N1A FAD 415 A 1 HETATM 20 C C2A FAD . . . B 2 -8.086 6.958 24.914 1 49.62 ? C2A FAD 415 A 1 HETATM 21 N N3A FAD . . . B 2 -9.132 6.144 24.888 1 50.74 ? N3A FAD 415 A 1 HETATM 22 C C4A FAD . . . B 2 -10.288 6.497 25.468 1 48.63 ? C4A FAD 415 A 1 HETATM 23 N N1 FAD . . . B 2 -20.409 3.295 16.421 1 21.14 ? N1 FAD 415 A 1 HETATM 24 C C2 FAD . . . B 2 -21.794 3.123 16.282 1 21.98 ? C2 FAD 415 A 1 HETATM 25 O O2 FAD . . . B 2 -22.527 3.059 17.271 1 20.2 ? O2 FAD 415 A 1 HETATM 26 N N3 FAD . . . B 2 -22.344 3.029 15.004 1 22.23 ? N3 FAD 415 A 1 HETATM 27 C C4 FAD . . . B 2 -21.52 3.104 13.876 1 22.47 ? C4 FAD 415 A 1 HETATM 28 O O4 FAD . . . B 2 -22.014 3.02 12.754 1 26.29 ? O4 FAD 415 A 1 HETATM 29 C C4X FAD . . . B 2 -20.147 3.268 14.012 1 21.08 ? C4X FAD 415 A 1 HETATM 30 N N5 FAD . . . B 2 -19.322 3.338 12.876 1 18.25 ? N5 FAD 415 A 1 HETATM 31 C C5X FAD . . . B 2 -17.93 3.457 13.016 1 17.99 ? C5X FAD 415 A 1 HETATM 32 C C6 FAD . . . B 2 -17.096 3.474 11.901 1 16.17 ? C6 FAD 415 A 1 HETATM 33 C C7 FAD . . . B 2 -15.718 3.597 12.065 1 15.87 ? C7 FAD 415 A 1 HETATM 34 C C7M FAD . . . B 2 -14.8 3.612 10.842 1 12.93 ? C7M FAD 415 A 1 HETATM 35 C C8 FAD . . . B 2 -15.175 3.707 13.343 1 18.87 ? C8 FAD 415 A 1 HETATM 36 C C8M FAD . . . B 2 -13.664 3.844 13.533 1 15.67 ? C8M FAD 415 A 1 HETATM 37 C C9 FAD . . . B 2 -16.007 3.689 14.454 1 17.7 ? C9 FAD 415 A 1 HETATM 38 C C9A FAD . . . B 2 -17.38 3.563 14.286 1 19.54 ? C9A FAD 415 A 1 HETATM 39 N N10 FAD . . . B 2 -18.21 3.543 15.406 1 21.49 ? N10 FAD 415 A 1 HETATM 40 C C10 FAD . . . B 2 -19.592 3.364 15.278 1 20.62 ? C10 FAD 415 A 1 HETATM 41 C C1' FAD . . . B 2 -17.631 3.776 16.733 1 19.99 ? C1' FAD 415 A 1 HETATM 42 C C2' FAD . . . B 2 -18.12 5.133 17.216 1 23.73 ? C2' FAD 415 A 1 HETATM 43 O O2' FAD . . . B 2 -17.127 6.11 16.904 1 20.76 ? O2' FAD 415 A 1 HETATM 44 C C3' FAD . . . B 2 -18.382 5.102 18.718 1 25.7 ? C3' FAD 415 A 1 HETATM 45 O O3' FAD . . . B 2 -19.565 5.846 19.035 1 28.38 ? O3' FAD 415 A 1 HETATM 46 C C4' FAD . . . B 2 -17.198 5.714 19.435 1 28.39 ? C4' FAD 415 A 1 HETATM 47 O O4' FAD . . . B 2 -16.029 4.93 19.166 1 29.61 ? O4' FAD 415 A 1 HETATM 48 C C5' FAD . . . B 2 -17.471 5.812 20.936 1 28.88 ? C5' FAD 415 A 1 HETATM 49 O O5' FAD . . . B 2 -17.458 7.185 21.319 1 28.45 ? O5' FAD 415 A 1 HETATM 50 P P FAD . . . B 2 -18.168 7.678 22.67 1 25.61 ? P FAD 415 A 1 HETATM 51 O O1P FAD . . . B 2 -17.922 9.13 22.812 1 28.83 ? O1P FAD 415 A 1 HETATM 52 O O2P FAD . . . B 2 -19.549 7.17 22.73 1 24.54 ? O2P FAD 415 A 1 HETATM 53 O O3P FAD . . . B 2 -17.306 6.887 23.784 1 29.42 ? O3P FAD 415 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #