data_3JR1 # _model_server_result.job_id xlhiZLR-9qgGs7HbD8bIQw _model_server_result.datetime_utc '2024-11-05 21:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":296}' # _entry.id 3JR1 # _exptl.entry_id 3JR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 132.92 _cell.angle_gamma 90 _cell.entry_id 3JR1 _cell.length_a 137.308 _cell.length_b 85.627 _cell.length_c 99.009 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 19 A GLY 0 1_555 A N MSE 20 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 20 A MSE 1 1_555 A N TRP 21 A TRP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C GLU 48 A GLU 29 1_555 A N MSE 49 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 49 A MSE 30 1_555 A N ASN 50 A ASN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C SER 73 A SER 54 1_555 A N MSE 74 A MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 74 A MSE 55 1_555 A N PHE 75 A PHE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale7 B C GLY 19 B GLY 0 1_555 B N MSE 20 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 B C MSE 20 B MSE 1 1_555 B N TRP 21 B TRP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C GLU 48 B GLU 29 1_555 B N MSE 49 B MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 B C MSE 49 B MSE 30 1_555 B N ASN 50 B ASN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 B C SER 73 B SER 54 1_555 B N MSE 74 B MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale12 B C MSE 74 B MSE 55 1_555 B N PHE 75 B PHE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3JR1 _atom_sites.fract_transf_matrix[1][1] 0.007283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006772 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UNL A 1 294 1 UNL UNL . D 3 EDO A 1 295 3 EDO EDO . E 3 EDO A 1 296 5 EDO EDO . F 2 UNL B 1 294 2 UNL UNL . G 3 EDO B 1 295 4 EDO EDO . H 4 HOH A 1 297 7 HOH HOH . H 4 HOH A 2 298 8 HOH HOH . H 4 HOH A 3 299 12 HOH HOH . H 4 HOH A 4 300 14 HOH HOH . H 4 HOH A 5 301 17 HOH HOH . H 4 HOH A 6 302 19 HOH HOH . H 4 HOH A 7 303 20 HOH HOH . H 4 HOH A 8 304 22 HOH HOH . H 4 HOH A 9 305 23 HOH HOH . H 4 HOH A 10 306 24 HOH HOH . H 4 HOH A 11 307 26 HOH HOH . H 4 HOH A 12 308 27 HOH HOH . H 4 HOH A 13 309 28 HOH HOH . H 4 HOH A 14 310 29 HOH HOH . H 4 HOH A 15 311 30 HOH HOH . H 4 HOH A 16 312 31 HOH HOH . H 4 HOH A 17 313 34 HOH HOH . H 4 HOH A 18 314 41 HOH HOH . H 4 HOH A 19 315 43 HOH HOH . H 4 HOH A 20 316 44 HOH HOH . H 4 HOH A 21 317 45 HOH HOH . H 4 HOH A 22 318 46 HOH HOH . H 4 HOH A 23 319 51 HOH HOH . H 4 HOH A 24 320 52 HOH HOH . H 4 HOH A 25 321 53 HOH HOH . H 4 HOH A 26 322 54 HOH HOH . H 4 HOH A 27 323 61 HOH HOH . H 4 HOH A 28 324 62 HOH HOH . H 4 HOH A 29 325 63 HOH HOH . H 4 HOH A 30 326 66 HOH HOH . H 4 HOH A 31 327 67 HOH HOH . H 4 HOH A 32 328 68 HOH HOH . H 4 HOH A 33 329 69 HOH HOH . H 4 HOH A 34 330 70 HOH HOH . H 4 HOH A 35 331 71 HOH HOH . H 4 HOH A 36 332 72 HOH HOH . H 4 HOH A 37 333 73 HOH HOH . H 4 HOH A 38 334 74 HOH HOH . H 4 HOH A 39 335 75 HOH HOH . H 4 HOH A 40 336 76 HOH HOH . H 4 HOH A 41 337 77 HOH HOH . H 4 HOH A 42 338 78 HOH HOH . H 4 HOH A 43 339 79 HOH HOH . H 4 HOH A 44 340 80 HOH HOH . H 4 HOH A 45 341 81 HOH HOH . H 4 HOH A 46 342 82 HOH HOH . H 4 HOH A 47 343 83 HOH HOH . H 4 HOH A 48 344 95 HOH HOH . H 4 HOH A 49 345 96 HOH HOH . H 4 HOH A 50 346 97 HOH HOH . H 4 HOH A 51 347 98 HOH HOH . H 4 HOH A 52 348 99 HOH HOH . H 4 HOH A 53 349 100 HOH HOH . H 4 HOH A 54 350 101 HOH HOH . H 4 HOH A 55 351 102 HOH HOH . H 4 HOH A 56 352 103 HOH HOH . H 4 HOH A 57 353 104 HOH HOH . H 4 HOH A 58 354 105 HOH HOH . H 4 HOH A 59 355 106 HOH HOH . H 4 HOH A 60 356 107 HOH HOH . H 4 HOH A 61 357 108 HOH HOH . H 4 HOH A 62 358 109 HOH HOH . H 4 HOH A 63 359 110 HOH HOH . H 4 HOH A 64 360 111 HOH HOH . H 4 HOH A 65 361 112 HOH HOH . H 4 HOH A 66 362 113 HOH HOH . H 4 HOH A 67 363 114 HOH HOH . H 4 HOH A 68 364 115 HOH HOH . H 4 HOH A 69 365 116 HOH HOH . H 4 HOH A 70 366 117 HOH HOH . H 4 HOH A 71 367 118 HOH HOH . H 4 HOH A 72 368 119 HOH HOH . H 4 HOH A 73 369 158 HOH HOH . H 4 HOH A 74 370 159 HOH HOH . H 4 HOH A 75 371 162 HOH HOH . H 4 HOH A 76 372 163 HOH HOH . I 4 HOH B 1 296 6 HOH HOH . I 4 HOH B 2 297 9 HOH HOH . I 4 HOH B 3 298 10 HOH HOH . I 4 HOH B 4 299 11 HOH HOH . I 4 HOH B 5 300 13 HOH HOH . I 4 HOH B 6 301 15 HOH HOH . I 4 HOH B 7 302 16 HOH HOH . I 4 HOH B 8 303 18 HOH HOH . I 4 HOH B 9 304 21 HOH HOH . I 4 HOH B 10 305 25 HOH HOH . I 4 HOH B 11 306 32 HOH HOH . I 4 HOH B 12 307 33 HOH HOH . I 4 HOH B 13 308 35 HOH HOH . I 4 HOH B 14 309 36 HOH HOH . I 4 HOH B 15 310 37 HOH HOH . I 4 HOH B 16 311 38 HOH HOH . I 4 HOH B 17 312 39 HOH HOH . I 4 HOH B 18 313 40 HOH HOH . I 4 HOH B 19 314 42 HOH HOH . I 4 HOH B 20 315 47 HOH HOH . I 4 HOH B 21 316 48 HOH HOH . I 4 HOH B 22 317 49 HOH HOH . I 4 HOH B 23 318 50 HOH HOH . I 4 HOH B 24 319 55 HOH HOH . I 4 HOH B 25 320 56 HOH HOH . I 4 HOH B 26 321 57 HOH HOH . I 4 HOH B 27 322 58 HOH HOH . I 4 HOH B 28 323 59 HOH HOH . I 4 HOH B 29 324 60 HOH HOH . I 4 HOH B 30 325 64 HOH HOH . I 4 HOH B 31 326 65 HOH HOH . I 4 HOH B 32 327 84 HOH HOH . I 4 HOH B 33 328 85 HOH HOH . I 4 HOH B 34 329 86 HOH HOH . I 4 HOH B 35 330 87 HOH HOH . I 4 HOH B 36 331 88 HOH HOH . I 4 HOH B 37 332 89 HOH HOH . I 4 HOH B 38 333 90 HOH HOH . I 4 HOH B 39 334 91 HOH HOH . I 4 HOH B 40 335 92 HOH HOH . I 4 HOH B 41 336 93 HOH HOH . I 4 HOH B 42 337 94 HOH HOH . I 4 HOH B 43 338 120 HOH HOH . I 4 HOH B 44 339 121 HOH HOH . I 4 HOH B 45 340 122 HOH HOH . I 4 HOH B 46 341 123 HOH HOH . I 4 HOH B 47 342 124 HOH HOH . I 4 HOH B 48 343 125 HOH HOH . I 4 HOH B 49 344 126 HOH HOH . I 4 HOH B 50 345 127 HOH HOH . I 4 HOH B 51 346 128 HOH HOH . I 4 HOH B 52 347 129 HOH HOH . I 4 HOH B 53 348 130 HOH HOH . I 4 HOH B 54 349 131 HOH HOH . I 4 HOH B 55 350 132 HOH HOH . I 4 HOH B 56 351 133 HOH HOH . I 4 HOH B 57 352 134 HOH HOH . I 4 HOH B 58 353 135 HOH HOH . I 4 HOH B 59 354 136 HOH HOH . I 4 HOH B 60 355 137 HOH HOH . I 4 HOH B 61 356 138 HOH HOH . I 4 HOH B 62 357 139 HOH HOH . I 4 HOH B 63 358 140 HOH HOH . I 4 HOH B 64 359 141 HOH HOH . I 4 HOH B 65 360 142 HOH HOH . I 4 HOH B 66 361 143 HOH HOH . I 4 HOH B 67 362 144 HOH HOH . I 4 HOH B 68 363 145 HOH HOH . I 4 HOH B 69 364 146 HOH HOH . I 4 HOH B 70 365 147 HOH HOH . I 4 HOH B 71 366 148 HOH HOH . I 4 HOH B 72 367 149 HOH HOH . I 4 HOH B 73 368 150 HOH HOH . I 4 HOH B 74 369 151 HOH HOH . I 4 HOH B 75 370 152 HOH HOH . I 4 HOH B 76 371 153 HOH HOH . I 4 HOH B 77 372 154 HOH HOH . I 4 HOH B 78 373 155 HOH HOH . I 4 HOH B 79 374 156 HOH HOH . I 4 HOH B 80 375 157 HOH HOH . I 4 HOH B 81 376 160 HOH HOH . I 4 HOH B 82 377 161 HOH HOH . I 4 HOH B 83 378 164 HOH HOH . I 4 HOH B 84 379 165 HOH HOH . I 4 HOH B 85 380 166 HOH HOH . I 4 HOH B 86 381 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 39.965 30.679 22.02 1 56.13 ? C1 EDO 296 A 1 HETATM 2 O O1 EDO . . . E 3 39.68 29.629 22.952 1 57.43 ? O1 EDO 296 A 1 HETATM 3 C C2 EDO . . . E 3 41.027 31.599 22.624 1 54.53 ? C2 EDO 296 A 1 HETATM 4 O O2 EDO . . . E 3 42.215 31.562 21.819 1 51.38 ? O2 EDO 296 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #