data_3JR8
#
_model_server_result.job_id            VEXSJ3VEQXfx_TZ20S_8QQ 
_model_server_result.datetime_utc      '2024-10-10 07:25:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":134}' 
#
_entry.id    3JR8 
#
_exptl.entry_id    3JR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          126 
_cell.angle_gamma         90 
_cell.entry_id            3JR8 
_cell.length_a            59.236 
_cell.length_b            100.879 
_cell.length_c            47.166 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1,2 
B,E,F,H 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 122 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
disulf ? disulf8 B SG CYS 26 B CYS 27 1_555 B SG CYS 115 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf9 B SG CYS 28 B CYS 29 1_555 B SG CYS 44 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf10 B SG CYS 43 B CYS 44 1_555 B SG CYS 95 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf11 B SG CYS 49 B CYS 50 1_555 B SG CYS 122 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf12 B SG CYS 50 B CYS 51 1_555 B SG CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf13 B SG CYS 57 B CYS 61 1_555 B SG CYS 81 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf14 B SG CYS 75 B CYS 84 1_555 B SG CYS 86 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc1 A OH TYR 21 A TYR 22 1_555 C CA CA . A CA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc2 A OD2 ASP 38 A ASP 39 1_555 D CA CA . A CA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc3 A OG1 THR 40 A THR 41 1_555 C CA CA . A CA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? 
metalc ? metalc4 A OG1 THR 40 A THR 41 1_555 D CA CA . A CA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc5 A O PHE 96 A PHE 106 1_555 C CA CA . A CA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? 
metalc ? metalc6 A OG1 THR 102 A THR 112 1_555 D CA CA . A CA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? 
metalc ? metalc7 B OH TYR 21 B TYR 22 1_555 E CA CA . B CA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc8 B OD2 ASP 38 B ASP 39 1_555 F CA CA . B CA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? 
metalc ? metalc9 B OG1 THR 40 B THR 41 1_555 E CA CA . B CA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc10 B OG1 THR 40 B THR 41 1_555 F CA CA . B CA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? 
metalc ? metalc11 B O PHE 96 B PHE 106 1_555 E CA CA . B CA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? 
metalc ? metalc12 B OG1 THR 102 B THR 112 1_555 F CA CA . B CA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3JR8 
_atom_sites.fract_transf_matrix[1][1]    0.016882 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.012265 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009913 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026207 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 134 3 CA CA . 
D 2 CA A 1 135 4 CA CA . 
E 2 CA B 1 134 1 CA CA . 
F 2 CA B 1 135 2 CA CA . 
G 3 HOH A 1 15 15 HOH HOH . 
G 3 HOH A 2 57 57 HOH HOH . 
G 3 HOH A 3 58 58 HOH HOH . 
G 3 HOH A 4 63 63 HOH HOH . 
G 3 HOH A 5 64 64 HOH HOH . 
G 3 HOH A 6 136 1 HOH HOH . 
G 3 HOH A 7 137 2 HOH HOH . 
G 3 HOH A 8 138 3 HOH HOH . 
G 3 HOH A 9 139 6 HOH HOH . 
G 3 HOH A 10 140 7 HOH HOH . 
G 3 HOH A 11 141 8 HOH HOH . 
G 3 HOH A 12 142 9 HOH HOH . 
G 3 HOH A 13 143 10 HOH HOH . 
G 3 HOH A 14 144 12 HOH HOH . 
G 3 HOH A 15 145 13 HOH HOH . 
G 3 HOH A 16 146 16 HOH HOH . 
G 3 HOH A 17 147 17 HOH HOH . 
G 3 HOH A 18 148 18 HOH HOH . 
G 3 HOH A 19 149 20 HOH HOH . 
G 3 HOH A 20 150 22 HOH HOH . 
G 3 HOH A 21 151 23 HOH HOH . 
G 3 HOH A 22 152 24 HOH HOH . 
G 3 HOH A 23 153 25 HOH HOH . 
G 3 HOH A 24 154 26 HOH HOH . 
G 3 HOH A 25 155 27 HOH HOH . 
G 3 HOH A 26 156 28 HOH HOH . 
G 3 HOH A 27 157 29 HOH HOH . 
G 3 HOH A 28 158 30 HOH HOH . 
G 3 HOH A 29 159 32 HOH HOH . 
G 3 HOH A 30 160 37 HOH HOH . 
G 3 HOH A 31 161 41 HOH HOH . 
G 3 HOH A 32 162 43 HOH HOH . 
G 3 HOH A 33 163 45 HOH HOH . 
G 3 HOH A 34 164 47 HOH HOH . 
G 3 HOH A 35 165 49 HOH HOH . 
G 3 HOH A 36 166 51 HOH HOH . 
G 3 HOH A 37 167 52 HOH HOH . 
G 3 HOH A 38 168 53 HOH HOH . 
G 3 HOH A 39 169 56 HOH HOH . 
G 3 HOH A 40 170 59 HOH HOH . 
G 3 HOH A 41 171 61 HOH HOH . 
G 3 HOH A 42 172 68 HOH HOH . 
G 3 HOH A 43 173 69 HOH HOH . 
G 3 HOH A 44 174 71 HOH HOH . 
G 3 HOH A 45 175 72 HOH HOH . 
G 3 HOH A 46 176 76 HOH HOH . 
G 3 HOH A 47 177 77 HOH HOH . 
G 3 HOH A 48 178 78 HOH HOH . 
G 3 HOH A 49 179 79 HOH HOH . 
G 3 HOH A 50 180 80 HOH HOH . 
G 3 HOH A 51 181 81 HOH HOH . 
G 3 HOH A 52 182 82 HOH HOH . 
G 3 HOH A 53 183 83 HOH HOH . 
G 3 HOH A 54 184 84 HOH HOH . 
H 3 HOH B 1 60 60 HOH HOH . 
H 3 HOH B 2 62 62 HOH HOH . 
H 3 HOH B 3 65 65 HOH HOH . 
H 3 HOH B 4 66 66 HOH HOH . 
H 3 HOH B 5 136 4 HOH HOH . 
H 3 HOH B 6 137 5 HOH HOH . 
H 3 HOH B 7 138 11 HOH HOH . 
H 3 HOH B 8 139 14 HOH HOH . 
H 3 HOH B 9 140 19 HOH HOH . 
H 3 HOH B 10 141 21 HOH HOH . 
H 3 HOH B 11 142 31 HOH HOH . 
H 3 HOH B 12 143 33 HOH HOH . 
H 3 HOH B 13 144 34 HOH HOH . 
H 3 HOH B 14 145 35 HOH HOH . 
H 3 HOH B 15 146 36 HOH HOH . 
H 3 HOH B 16 147 38 HOH HOH . 
H 3 HOH B 17 148 39 HOH HOH . 
H 3 HOH B 18 149 40 HOH HOH . 
H 3 HOH B 19 150 42 HOH HOH . 
H 3 HOH B 20 151 44 HOH HOH . 
H 3 HOH B 21 152 46 HOH HOH . 
H 3 HOH B 22 153 48 HOH HOH . 
H 3 HOH B 23 154 50 HOH HOH . 
H 3 HOH B 24 155 54 HOH HOH . 
H 3 HOH B 25 156 55 HOH HOH . 
H 3 HOH B 26 157 67 HOH HOH . 
H 3 HOH B 27 158 70 HOH HOH . 
H 3 HOH B 28 159 73 HOH HOH . 
H 3 HOH B 29 160 74 HOH HOH . 
H 3 HOH B 30 161 75 HOH HOH . 
H 3 HOH B 31 162 85 HOH HOH . 
H 3 HOH B 32 163 86 HOH HOH . 
H 3 HOH B 33 164 87 HOH HOH . 
H 3 HOH B 34 165 88 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -3.379 
_atom_site.Cartn_y               24.344 
_atom_site.Cartn_z               14.199 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        59.66 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           134 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#