data_3JRX # _model_server_result.job_id 3_W7s11HG0HI4KcpB3zWbw _model_server_result.datetime_utc '2024-12-26 23:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 3JRX # _exptl.entry_id 3JRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 520.655 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SORAPHEN A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3JRX _cell.length_a 74.744 _cell.length_b 74.744 _cell.length_c 179.414 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H44 O8' _chem_comp.formula_weight 520.655 _chem_comp.id S1A _chem_comp.mon_nstd_flag . _chem_comp.name 'SORAPHEN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S1A sing 277 n n C1 O1 S1A doub 278 n n C1 O18 S1A sing 279 n n C2 C3 S1A sing 280 n n C2 C19 S1A sing 281 n n C2 H2 S1A sing 282 n n C3 C4 S1A sing 283 n n C3 O3 S1A sing 284 n n C3 O7 S1A sing 285 n n C4 C5 S1A sing 286 n n C4 O4 S1A sing 287 n n C4 H4 S1A sing 288 n n C5 C6 S1A sing 289 n n C5 O5 S1A sing 290 n n C5 H5 S1A sing 291 n n C6 C7 S1A sing 292 n n C6 C21 S1A sing 293 n n C6 H6 S1A sing 294 n n C7 C8 S1A sing 295 n n C7 O7 S1A sing 296 n n C7 H7 S1A sing 297 n n C8 C9 S1A sing 298 n n C8 C22 S1A sing 299 n n C8 H8 S1A sing 300 n n C9 C10 S1A doub 301 e n C9 H9 S1A sing 302 n n C10 C11 S1A sing 303 n n C10 H10 S1A sing 304 n n C11 C12 S1A sing 305 n n C11 O11 S1A sing 306 n n C11 H11 S1A sing 307 n n C12 C13 S1A sing 308 n n C12 O12 S1A sing 309 n n C12 H12 S1A sing 310 n n C13 C14 S1A sing 311 n n C13 H131 S1A sing 312 n n C13 H132 S1A sing 313 n n C14 C15 S1A sing 314 n n C14 H141 S1A sing 315 n n C14 H142 S1A sing 316 n n C15 C16 S1A sing 317 n n C15 H151 S1A sing 318 n n C15 H152 S1A sing 319 n n C16 C17 S1A sing 320 n n C16 H161 S1A sing 321 n n C16 H162 S1A sing 322 n n C17 C25 S1A sing 323 n n C17 O18 S1A sing 324 n n C17 H17 S1A sing 325 n n C19 H191 S1A sing 326 n n C19 H192 S1A sing 327 n n C19 H193 S1A sing 328 n n C20 O4 S1A sing 329 n n C20 H201 S1A sing 330 n n C20 H202 S1A sing 331 n n C20 H203 S1A sing 332 n n C21 H211 S1A sing 333 n n C21 H212 S1A sing 334 n n C21 H213 S1A sing 335 n n C22 H221 S1A sing 336 n n C22 H222 S1A sing 337 n n C22 H223 S1A sing 338 n n C23 O11 S1A sing 339 n n C23 H231 S1A sing 340 n n C23 H232 S1A sing 341 n n C23 H233 S1A sing 342 n n C24 O12 S1A sing 343 n n C24 H241 S1A sing 344 n n C24 H242 S1A sing 345 n n C24 H243 S1A sing 346 n n C25 C26 S1A doub 347 n y C25 C30 S1A sing 348 n y C26 C27 S1A sing 349 n y C26 H26 S1A sing 350 n n C27 C28 S1A doub 351 n y C27 H27 S1A sing 352 n n C28 C29 S1A sing 353 n y C28 H28 S1A sing 354 n n C29 C30 S1A doub 355 n y C29 H29 S1A sing 356 n n C30 H30 S1A sing 357 n n O3 H3 S1A sing 358 n n O5 HA S1A sing 359 n n # _atom_sites.entry_id 3JRX _atom_sites.fract_transf_matrix[1][1] 0.013379 _atom_sites.fract_transf_matrix[1][2] 0.007724 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S1A A 1 1000 1000 S1A S1A . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . C 3 HOH A 63 63 63 HOH HOH . C 3 HOH A 64 64 64 HOH HOH . C 3 HOH A 65 65 65 HOH HOH . C 3 HOH A 66 66 66 HOH HOH . C 3 HOH A 67 67 67 HOH HOH . C 3 HOH A 68 68 68 HOH HOH . C 3 HOH A 69 69 69 HOH HOH . C 3 HOH A 70 70 70 HOH HOH . C 3 HOH A 71 71 71 HOH HOH . C 3 HOH A 72 72 72 HOH HOH . C 3 HOH A 73 73 73 HOH HOH . C 3 HOH A 74 74 74 HOH HOH . C 3 HOH A 75 75 75 HOH HOH . C 3 HOH A 76 76 76 HOH HOH . C 3 HOH A 77 77 77 HOH HOH . C 3 HOH A 78 78 78 HOH HOH . C 3 HOH A 79 79 79 HOH HOH . C 3 HOH A 80 80 80 HOH HOH . C 3 HOH A 81 81 81 HOH HOH . C 3 HOH A 82 82 82 HOH HOH . C 3 HOH A 83 83 83 HOH HOH . C 3 HOH A 84 84 84 HOH HOH . C 3 HOH A 85 85 85 HOH HOH . C 3 HOH A 86 86 86 HOH HOH . C 3 HOH A 87 87 87 HOH HOH . C 3 HOH A 88 88 88 HOH HOH . C 3 HOH A 89 89 89 HOH HOH . C 3 HOH A 90 90 90 HOH HOH . C 3 HOH A 91 91 91 HOH HOH . C 3 HOH A 92 92 92 HOH HOH . C 3 HOH A 93 93 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S1A . . . B 2 -44.229 25.233 -16.073 1 37.16 ? C1 S1A 1000 A 1 HETATM 2 C C2 S1A . . . B 2 -43.036 25.465 -17.021 1 34.26 ? C2 S1A 1000 A 1 HETATM 3 C C3 S1A . . . B 2 -43.003 24.382 -18.164 1 32.89 ? C3 S1A 1000 A 1 HETATM 4 C C4 S1A . . . B 2 -41.759 24.584 -19.154 1 32.57 ? C4 S1A 1000 A 1 HETATM 5 C C5 S1A . . . B 2 -41.93 23.753 -20.5 1 33.91 ? C5 S1A 1000 A 1 HETATM 6 C C6 S1A . . . B 2 -43.372 23.857 -21.09 1 32.34 ? C6 S1A 1000 A 1 HETATM 7 C C7 S1A . . . B 2 -44.453 23.554 -19.977 1 32.07 ? C7 S1A 1000 A 1 HETATM 8 C C8 S1A . . . B 2 -45.907 23.703 -20.533 1 33.29 ? C8 S1A 1000 A 1 HETATM 9 C C9 S1A . . . B 2 -46.949 23.39 -19.381 1 33.59 ? C9 S1A 1000 A 1 HETATM 10 C C10 S1A . . . B 2 -47.259 22.082 -18.99 1 35.94 ? C10 S1A 1000 A 1 HETATM 11 C C11 S1A . . . B 2 -48.292 21.799 -17.855 1 38.34 ? C11 S1A 1000 A 1 HETATM 12 C C12 S1A . . . B 2 -47.914 20.505 -17.059 1 38.5 ? C12 S1A 1000 A 1 HETATM 13 C C13 S1A . . . B 2 -46.526 20.635 -16.378 1 37.7 ? C13 S1A 1000 A 1 HETATM 14 C C14 S1A . . . B 2 -46.404 21.757 -15.357 1 37.45 ? C14 S1A 1000 A 1 HETATM 15 C C15 S1A . . . B 2 -45.107 21.629 -14.605 1 37.32 ? C15 S1A 1000 A 1 HETATM 16 C C16 S1A . . . B 2 -44.905 22.699 -13.55 1 36.16 ? C16 S1A 1000 A 1 HETATM 17 C C17 S1A . . . B 2 -44.98 24.166 -14.008 1 37.44 ? C17 S1A 1000 A 1 HETATM 18 C C19 S1A . . . B 2 -41.731 25.484 -16.201 1 35.13 ? C19 S1A 1000 A 1 HETATM 19 C C20 S1A . . . B 2 -40.198 26.39 -19.445 1 31.43 ? C20 S1A 1000 A 1 HETATM 20 C C21 S1A . . . B 2 -43.559 25.246 -21.755 1 33.8 ? C21 S1A 1000 A 1 HETATM 21 C C22 S1A . . . B 2 -46.171 22.765 -21.727 1 33.84 ? C22 S1A 1000 A 1 HETATM 22 C C23 S1A . . . B 2 -50.598 22.373 -17.707 1 43.77 ? C23 S1A 1000 A 1 HETATM 23 C C24 S1A . . . B 2 -47.966 18.103 -17.272 1 37.82 ? C24 S1A 1000 A 1 HETATM 24 C C25 S1A . . . B 2 -44.695 24.994 -12.724 1 35.88 ? C25 S1A 1000 A 1 HETATM 25 C C26 S1A . . . B 2 -43.336 25.097 -12.236 1 34.3 ? C26 S1A 1000 A 1 HETATM 26 C C27 S1A . . . B 2 -43.054 25.8 -11.05 1 33.89 ? C27 S1A 1000 A 1 HETATM 27 C C28 S1A . . . B 2 -44.107 26.411 -10.327 1 34.07 ? C28 S1A 1000 A 1 HETATM 28 C C29 S1A . . . B 2 -45.454 26.318 -10.797 1 33.59 ? C29 S1A 1000 A 1 HETATM 29 C C30 S1A . . . B 2 -45.744 25.608 -12.001 1 35.51 ? C30 S1A 1000 A 1 HETATM 30 O O1 S1A . . . B 2 -45.397 25.687 -16.159 1 37.67 ? O1 S1A 1000 A 1 HETATM 31 O O3 S1A . . . B 2 -42.894 23.067 -17.563 1 33.54 ? O3 S1A 1000 A 1 HETATM 32 O O4 S1A . . . B 2 -41.604 25.991 -19.473 1 34.56 ? O4 S1A 1000 A 1 HETATM 33 O O5 S1A . . . B 2 -41.627 22.38 -20.242 1 33.99 ? O5 S1A 1000 A 1 HETATM 34 O O7 S1A . . . B 2 -44.283 24.468 -18.854 1 29.92 ? O7 S1A 1000 A 1 HETATM 35 O O11 S1A . . . B 2 -49.596 21.619 -18.442 1 41.72 ? O11 S1A 1000 A 1 HETATM 36 O O12 S1A . . . B 2 -47.908 19.382 -17.983 1 40.39 ? O12 S1A 1000 A 1 HETATM 37 O O18 S1A . . . B 2 -43.925 24.436 -15.002 1 40.09 ? O18 S1A 1000 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #