data_3JSD # _model_server_result.job_id vkGBvksALQY7vyibqtRvkw _model_server_result.datetime_utc '2024-11-14 04:03:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":200}' # _entry.id 3JSD # _exptl.entry_id 3JSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.111 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3JSD _cell.length_a 80.843 _cell.length_b 80.843 _cell.length_c 38.842 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B C CYS 7 B CYS 7 1_555 B N DAL 8 B DAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C DAL 8 B DAL 8 1_555 B N SER 9 B SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 D C CYS 7 D CYS 7 1_555 D N DAL 8 D DAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 D C DAL 8 D DAL 8 1_555 D N SER 9 D SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 E ZN ZN . B ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 D NE2 HIS 10 D HIS 10 1_555 H ZN ZN . D ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C6 H6 O' _chem_comp.formula_weight 94.111 _chem_comp.id IPH _chem_comp.mon_nstd_flag . _chem_comp.name PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPH doub 170 n y C1 C6 IPH sing 171 n y C1 O1 IPH sing 172 n n C2 C3 IPH sing 173 n y C2 H2 IPH sing 174 n n C3 C4 IPH doub 175 n y C3 H3 IPH sing 176 n n C4 C5 IPH sing 177 n y C4 H4 IPH sing 178 n n C5 C6 IPH doub 179 n y C5 H5 IPH sing 180 n n C6 H6 IPH sing 181 n n O1 HO1 IPH sing 182 n n # _atom_sites.entry_id 3JSD _atom_sites.fract_transf_matrix[1][1] 0.01237 _atom_sites.fract_transf_matrix[1][2] 0.007142 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN B 1 31 31 ZN ZN . F 4 CL B 1 32 32 CL CL . G 5 IPH C 1 200 200 IPH IPH . H 3 ZN D 1 31 31 ZN ZN . I 4 CL D 1 32 32 CL CL . J 6 HOH A 1 22 6 HOH HOH . J 6 HOH A 2 23 8 HOH HOH . J 6 HOH A 3 24 13 HOH HOH . J 6 HOH A 4 25 15 HOH HOH . K 6 HOH B 1 33 2 HOH HOH . K 6 HOH B 2 34 3 HOH HOH . K 6 HOH B 3 35 7 HOH HOH . K 6 HOH B 4 36 9 HOH HOH . K 6 HOH B 5 37 11 HOH HOH . K 6 HOH B 6 38 12 HOH HOH . K 6 HOH B 7 39 17 HOH HOH . K 6 HOH B 8 40 18 HOH HOH . K 6 HOH B 9 41 10 HOH HOH . L 6 HOH D 1 33 1 HOH HOH . L 6 HOH D 2 34 4 HOH HOH . L 6 HOH D 3 35 5 HOH HOH . L 6 HOH D 4 37 14 HOH HOH . L 6 HOH D 5 38 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPH . . . G 5 -9.579 5.63 9.585 1 42.17 ? C1 IPH 200 C 1 HETATM 2 C C2 IPH . . . G 5 -8.156 5.459 9.489 1 42.28 ? C2 IPH 200 C 1 HETATM 3 C C3 IPH . . . G 5 -7.666 4.962 8.229 1 41.82 ? C3 IPH 200 C 1 HETATM 4 C C4 IPH . . . G 5 -8.573 4.677 7.174 1 42.03 ? C4 IPH 200 C 1 HETATM 5 C C5 IPH . . . G 5 -9.971 4.862 7.314 1 41.56 ? C5 IPH 200 C 1 HETATM 6 C C6 IPH . . . G 5 -10.507 5.359 8.561 1 41.86 ? C6 IPH 200 C 1 HETATM 7 O O1 IPH . . . G 5 -10.097 6.1 10.772 1 41.87 ? O1 IPH 200 C 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #