data_3JSI # _model_server_result.job_id Lgepuq8-pkFza1GBFW409g _model_server_result.datetime_utc '2025-08-31 08:51:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jsi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 3JSI # _exptl.entry_id 3JSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.351 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-benzyl-1-cyclopentyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JSI _cell.length_a 104.099 _cell.length_b 104.099 _cell.length_c 271.04 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 256 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 A NE2 HIS 115 A HIS 292 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc3 A OD2 ASP 116 A ASP 293 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc4 A OD1 ASP 116 A ASP 293 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 A OD1 ASP 225 A ASP 402 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc6 D MG MG . A MG 902 1_555 I O HOH . A HOH 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc7 D MG MG . A MG 902 1_555 I O HOH . A HOH 952 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc8 D MG MG . A MG 902 1_555 I O HOH . A HOH 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc9 D MG MG . A MG 902 1_555 I O HOH . A HOH 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc10 B NE2 HIS 79 B HIS 256 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc11 B NE2 HIS 115 B HIS 292 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc12 B OD2 ASP 116 B ASP 293 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc13 B OD1 ASP 116 B ASP 293 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc14 B OD1 ASP 225 B ASP 402 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc15 G MG MG . B MG 902 1_555 J O HOH . B HOH 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc16 G MG MG . B MG 902 1_555 J O HOH . B HOH 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc17 G MG MG . B MG 902 1_555 J O HOH . B HOH 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc18 G MG MG . B MG 902 1_555 J O HOH . B HOH 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? # _chem_comp.formula 'C17 H18 N4 O' _chem_comp.formula_weight 294.351 _chem_comp.id WTC _chem_comp.mon_nstd_flag . _chem_comp.name 6-benzyl-1-cyclopentyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 WTC doub 376 n y C1 C5 WTC sing 377 n y C1 C6 WTC sing 378 n n N9 C2 WTC sing 379 n n N3 C2 WTC sing 380 n y C10 N3 WTC sing 381 n n N3 N4 WTC sing 382 n y N4 C5 WTC doub 383 n y C5 H5 WTC sing 384 n n N7 C6 WTC sing 385 n n C6 O15 WTC doub 386 n n C8 N7 WTC sing 387 n n N7 HN7 WTC sing 388 n n C16 C8 WTC sing 389 n n N9 C8 WTC doub 390 n n C11 C10 WTC sing 391 n n C14 C10 WTC sing 392 n n C10 H10 WTC sing 393 n n C12 C11 WTC sing 394 n n C11 H11 WTC sing 395 n n C11 H11A WTC sing 396 n n C12 C13 WTC sing 397 n n C12 H12 WTC sing 398 n n C12 H12A WTC sing 399 n n C13 C14 WTC sing 400 n n C13 H13 WTC sing 401 n n C13 H13A WTC sing 402 n n C14 H14 WTC sing 403 n n C14 H14A WTC sing 404 n n C17 C16 WTC sing 405 n n C16 H16 WTC sing 406 n n C16 H16A WTC sing 407 n n C18 C17 WTC doub 408 n y C17 C22 WTC sing 409 n y C19 C18 WTC sing 410 n y C18 H18 WTC sing 411 n n C19 C20 WTC doub 412 n y C19 H19 WTC sing 413 n n C20 C21 WTC sing 414 n y C20 H20 WTC sing 415 n n C21 C22 WTC doub 416 n y C21 H21 WTC sing 417 n n C22 H22 WTC sing 418 n n # _atom_sites.entry_id 3JSI _atom_sites.fract_transf_matrix[1][1] 0.009606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 901 901 ZN ZN . D 3 MG A 1 902 902 MG MG . E 4 WTC A 1 903 903 WTC WTC . F 2 ZN B 1 901 901 ZN ZN . G 3 MG B 1 902 902 MG MG . H 4 WTC B 1 903 903 WTC WTC . I 5 HOH A 1 951 2 HOH HOH . I 5 HOH A 2 952 3 HOH HOH . I 5 HOH A 3 953 4 HOH HOH . I 5 HOH A 4 954 5 HOH HOH . I 5 HOH A 5 960 11 HOH HOH . I 5 HOH A 6 961 12 HOH HOH . I 5 HOH A 7 963 14 HOH HOH . I 5 HOH A 8 966 17 HOH HOH . I 5 HOH A 9 969 20 HOH HOH . I 5 HOH A 10 971 22 HOH HOH . I 5 HOH A 11 972 23 HOH HOH . I 5 HOH A 12 973 24 HOH HOH . I 5 HOH A 13 974 26 HOH HOH . I 5 HOH A 14 979 32 HOH HOH . J 5 HOH B 1 955 6 HOH HOH . J 5 HOH B 2 956 7 HOH HOH . J 5 HOH B 3 957 8 HOH HOH . J 5 HOH B 4 958 9 HOH HOH . J 5 HOH B 5 959 10 HOH HOH . J 5 HOH B 6 962 13 HOH HOH . J 5 HOH B 7 964 15 HOH HOH . J 5 HOH B 8 965 16 HOH HOH . J 5 HOH B 9 967 18 HOH HOH . J 5 HOH B 10 968 19 HOH HOH . J 5 HOH B 11 970 21 HOH HOH . J 5 HOH B 12 975 27 HOH HOH . J 5 HOH B 13 976 29 HOH HOH . J 5 HOH B 14 977 30 HOH HOH . J 5 HOH B 15 978 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WTC . . . E 4 77.39 52.075 43.81 1 44.81 ? C1 WTC 903 A 1 HETATM 2 C C2 WTC . . . E 4 77.345 52.193 42.405 1 45.37 ? C2 WTC 903 A 1 HETATM 3 N N3 WTC . . . E 4 78.466 51.586 41.929 1 44.07 ? N3 WTC 903 A 1 HETATM 4 N N4 WTC . . . E 4 79.207 51.1 43.015 1 43.09 ? N4 WTC 903 A 1 HETATM 5 C C5 WTC . . . E 4 78.572 51.373 44.123 1 43.53 ? C5 WTC 903 A 1 HETATM 6 C C6 WTC . . . E 4 76.286 52.667 44.588 1 45.85 ? C6 WTC 903 A 1 HETATM 7 N N7 WTC . . . E 4 75.3 53.291 43.886 1 47.23 ? N7 WTC 903 A 1 HETATM 8 C C8 WTC . . . E 4 75.335 53.351 42.523 1 48.2 ? C8 WTC 903 A 1 HETATM 9 N N9 WTC . . . E 4 76.309 52.834 41.82 1 46.97 ? N9 WTC 903 A 1 HETATM 10 C C10 WTC . . . E 4 78.848 51.519 40.515 1 43.18 ? C10 WTC 903 A 1 HETATM 11 C C11 WTC . . . E 4 78.816 50.085 39.973 1 42.6 ? C11 WTC 903 A 1 HETATM 12 C C12 WTC . . . E 4 80.039 50.001 39.039 1 41.78 ? C12 WTC 903 A 1 HETATM 13 C C13 WTC . . . E 4 81.106 50.839 39.787 1 41.21 ? C13 WTC 903 A 1 HETATM 14 C C14 WTC . . . E 4 80.292 52.04 40.326 1 41.91 ? C14 WTC 903 A 1 HETATM 15 O O15 WTC . . . E 4 76.251 52.623 45.81 1 45.27 ? O15 WTC 903 A 1 HETATM 16 C C16 WTC . . . E 4 74.211 54.061 41.807 1 50.46 ? C16 WTC 903 A 1 HETATM 17 C C17 WTC . . . E 4 74.606 55.495 41.547 1 52.86 ? C17 WTC 903 A 1 HETATM 18 C C18 WTC . . . E 4 74.609 55.993 40.254 1 54.09 ? C18 WTC 903 A 1 HETATM 19 C C19 WTC . . . E 4 74.975 57.312 40.01 1 54.49 ? C19 WTC 903 A 1 HETATM 20 C C20 WTC . . . E 4 75.342 58.143 41.058 1 54.96 ? C20 WTC 903 A 1 HETATM 21 C C21 WTC . . . E 4 75.343 57.647 42.352 1 54.98 ? C21 WTC 903 A 1 HETATM 22 C C22 WTC . . . E 4 74.972 56.329 42.595 1 54.04 ? C22 WTC 903 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 412 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #