data_3JUL # _model_server_result.job_id sGyTuARgJSzGa8Dm4ExSrQ _model_server_result.datetime_utc '2025-02-05 06:58:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3JUL # _exptl.entry_id 3JUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.65 _cell.angle_gamma 90 _cell.entry_id 3JUL _cell.length_a 84.307 _cell.length_b 44.24 _cell.length_c 79.116 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 106 A THR 104 1_555 A N MSE 107 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 107 A MSE 105 1_555 A N ILE 108 A ILE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 A C ASP 135 A ASP 133 1_555 A N MSE 136 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 136 A MSE 134 1_555 A N VAL 137 A VAL 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C GLU 180 A GLU 178 1_555 A N MSE 181 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 181 A MSE 179 1_555 A N GLY 182 A GLY 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C ALA 264 A ALA 262 1_555 A N MSE 265 A MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 265 A MSE 263 1_555 A N ASN 266 A ASN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C ASN 266 A ASN 264 1_555 A N MSE 267 A MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 267 A MSE 265 1_555 A N PRO 268 A PRO 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale11 A C VAL 284 A VAL 282 1_555 A N MSE 285 A MSE 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 A C MSE 285 A MSE 283 1_555 A N GLN 286 A GLN 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 D O HOH . A HOH 395 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc2 D O HOH . A HOH 396 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3JUL _atom_sites.fract_transf_matrix[1][1] 0.011861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003101 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 401 MG MG2 . C 3 TA6 A 1 501 501 TA6 TA6 . D 4 HOH A 1 319 3 HOH TIP . D 4 HOH A 2 320 4 HOH TIP . D 4 HOH A 3 321 6 HOH TIP . D 4 HOH A 4 322 7 HOH TIP . D 4 HOH A 5 323 8 HOH TIP . D 4 HOH A 6 324 9 HOH TIP . D 4 HOH A 7 325 10 HOH TIP . D 4 HOH A 8 326 11 HOH TIP . D 4 HOH A 9 327 12 HOH TIP . D 4 HOH A 10 328 13 HOH TIP . D 4 HOH A 11 329 14 HOH TIP . D 4 HOH A 12 330 15 HOH TIP . D 4 HOH A 13 331 16 HOH TIP . D 4 HOH A 14 332 17 HOH TIP . D 4 HOH A 15 333 18 HOH TIP . D 4 HOH A 16 334 19 HOH TIP . D 4 HOH A 17 335 20 HOH TIP . D 4 HOH A 18 336 22 HOH TIP . D 4 HOH A 19 337 23 HOH TIP . D 4 HOH A 20 338 24 HOH TIP . D 4 HOH A 21 339 28 HOH TIP . D 4 HOH A 22 340 30 HOH TIP . D 4 HOH A 23 341 31 HOH TIP . D 4 HOH A 24 342 32 HOH TIP . D 4 HOH A 25 343 33 HOH TIP . D 4 HOH A 26 344 35 HOH TIP . D 4 HOH A 27 345 36 HOH TIP . D 4 HOH A 28 346 37 HOH TIP . D 4 HOH A 29 347 38 HOH TIP . D 4 HOH A 30 348 42 HOH TIP . D 4 HOH A 31 349 43 HOH TIP . D 4 HOH A 32 350 45 HOH TIP . D 4 HOH A 33 351 48 HOH TIP . D 4 HOH A 34 352 49 HOH TIP . D 4 HOH A 35 353 50 HOH TIP . D 4 HOH A 36 354 52 HOH TIP . D 4 HOH A 37 355 53 HOH TIP . D 4 HOH A 38 356 54 HOH TIP . D 4 HOH A 39 357 55 HOH TIP . D 4 HOH A 40 358 57 HOH TIP . D 4 HOH A 41 359 61 HOH TIP . D 4 HOH A 42 360 65 HOH TIP . D 4 HOH A 43 361 68 HOH TIP . D 4 HOH A 44 362 70 HOH TIP . D 4 HOH A 45 363 71 HOH TIP . D 4 HOH A 46 364 72 HOH TIP . D 4 HOH A 47 365 76 HOH TIP . D 4 HOH A 48 366 77 HOH TIP . D 4 HOH A 49 367 78 HOH TIP . D 4 HOH A 50 368 79 HOH TIP . D 4 HOH A 51 369 80 HOH TIP . D 4 HOH A 52 370 81 HOH TIP . D 4 HOH A 53 371 83 HOH TIP . D 4 HOH A 54 372 86 HOH TIP . D 4 HOH A 55 373 88 HOH TIP . D 4 HOH A 56 374 89 HOH TIP . D 4 HOH A 57 375 90 HOH TIP . D 4 HOH A 58 376 91 HOH TIP . D 4 HOH A 59 377 92 HOH TIP . D 4 HOH A 60 378 93 HOH TIP . D 4 HOH A 61 379 94 HOH TIP . D 4 HOH A 62 380 95 HOH TIP . D 4 HOH A 63 381 96 HOH TIP . D 4 HOH A 64 382 97 HOH TIP . D 4 HOH A 65 383 98 HOH TIP . D 4 HOH A 66 384 99 HOH TIP . D 4 HOH A 67 385 100 HOH TIP . D 4 HOH A 68 386 101 HOH TIP . D 4 HOH A 69 387 102 HOH TIP . D 4 HOH A 70 388 103 HOH TIP . D 4 HOH A 71 389 105 HOH TIP . D 4 HOH A 72 390 107 HOH TIP . D 4 HOH A 73 391 108 HOH TIP . D 4 HOH A 74 392 109 HOH TIP . D 4 HOH A 75 393 110 HOH TIP . D 4 HOH A 76 394 111 HOH TIP . D 4 HOH A 77 395 112 HOH TIP . D 4 HOH A 78 396 113 HOH TIP . D 4 HOH A 79 397 114 HOH TIP . D 4 HOH A 80 398 115 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 9.2 _atom_site.Cartn_y 7.68 _atom_site.Cartn_z 19.422 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #