data_3JUL
#
_model_server_result.job_id            F_yzjGOTlZCAQM2bY6BRfA 
_model_server_result.datetime_utc      '2025-02-05 07:02:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    3JUL 
#
_exptl.entry_id    3JUL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-beta-D-tagatofuranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.65 
_cell.angle_gamma         90 
_cell.entry_id            3JUL 
_cell.length_a            84.307 
_cell.length_b            44.24 
_cell.length_c            79.116 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JUL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 106 A THR 104 1_555 A N MSE 107 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C MSE 107 A MSE 105 1_555 A N ILE 108 A ILE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 A C ASP 135 A ASP 133 1_555 A N MSE 136 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C MSE 136 A MSE 134 1_555 A N VAL 137 A VAL 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale5 A C GLU 180 A GLU 178 1_555 A N MSE 181 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 A C MSE 181 A MSE 179 1_555 A N GLY 182 A GLY 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 A C ALA 264 A ALA 262 1_555 A N MSE 265 A MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 A C MSE 265 A MSE 263 1_555 A N ASN 266 A ASN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale9 A C ASN 266 A ASN 264 1_555 A N MSE 267 A MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 A C MSE 267 A MSE 265 1_555 A N PRO 268 A PRO 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale11 A C VAL 284 A VAL 282 1_555 A N MSE 285 A MSE 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 A C MSE 285 A MSE 283 1_555 A N GLN 286 A GLN 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 D O HOH . A HOH 395 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc2 D O HOH . A HOH 396 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                TA6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-O-phosphono-beta-D-tagatofuranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     6-O-phosphono-beta-D-tagatose;6-O-phosphono-D-tagatose;6-O-phosphono-tagatose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 TA6 sing 290 n n 
O1 HO1 TA6 sing 291 n n 
C1 C2 TA6 sing 292 n n 
C1 H11 TA6 sing 293 n n 
C1 H12 TA6 sing 294 n n 
C2 O2 TA6 sing 295 n n 
C2 C3 TA6 sing 296 n n 
C2 O5 TA6 sing 297 n n 
O2 HO2 TA6 sing 298 n n 
C3 O3 TA6 sing 299 n n 
C3 C4 TA6 sing 300 n n 
C3 H3 TA6 sing 301 n n 
O3 HO3 TA6 sing 302 n n 
C4 O4 TA6 sing 303 n n 
C4 C5 TA6 sing 304 n n 
C4 H4 TA6 sing 305 n n 
O4 HO4 TA6 sing 306 n n 
C5 O5 TA6 sing 307 n n 
C5 C6 TA6 sing 308 n n 
C5 H5 TA6 sing 309 n n 
C6 O6 TA6 sing 310 n n 
C6 H61 TA6 sing 311 n n 
C6 H62 TA6 sing 312 n n 
O6 P TA6 sing 313 n n 
P O1P TA6 sing 314 n n 
P O2P TA6 sing 315 n n 
P O3P TA6 doub 316 n n 
O1P H1P TA6 sing 317 n n 
O2P H2P TA6 sing 318 n n 
#
_atom_sites.entry_id                     3JUL 
_atom_sites.fract_transf_matrix[1][1]    0.011861 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003101 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022604 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013064 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 401 MG MG2 . 
C 3 TA6 A 1 501 501 TA6 TA6 . 
D 4 HOH A 1 319 3 HOH TIP . 
D 4 HOH A 2 320 4 HOH TIP . 
D 4 HOH A 3 321 6 HOH TIP . 
D 4 HOH A 4 322 7 HOH TIP . 
D 4 HOH A 5 323 8 HOH TIP . 
D 4 HOH A 6 324 9 HOH TIP . 
D 4 HOH A 7 325 10 HOH TIP . 
D 4 HOH A 8 326 11 HOH TIP . 
D 4 HOH A 9 327 12 HOH TIP . 
D 4 HOH A 10 328 13 HOH TIP . 
D 4 HOH A 11 329 14 HOH TIP . 
D 4 HOH A 12 330 15 HOH TIP . 
D 4 HOH A 13 331 16 HOH TIP . 
D 4 HOH A 14 332 17 HOH TIP . 
D 4 HOH A 15 333 18 HOH TIP . 
D 4 HOH A 16 334 19 HOH TIP . 
D 4 HOH A 17 335 20 HOH TIP . 
D 4 HOH A 18 336 22 HOH TIP . 
D 4 HOH A 19 337 23 HOH TIP . 
D 4 HOH A 20 338 24 HOH TIP . 
D 4 HOH A 21 339 28 HOH TIP . 
D 4 HOH A 22 340 30 HOH TIP . 
D 4 HOH A 23 341 31 HOH TIP . 
D 4 HOH A 24 342 32 HOH TIP . 
D 4 HOH A 25 343 33 HOH TIP . 
D 4 HOH A 26 344 35 HOH TIP . 
D 4 HOH A 27 345 36 HOH TIP . 
D 4 HOH A 28 346 37 HOH TIP . 
D 4 HOH A 29 347 38 HOH TIP . 
D 4 HOH A 30 348 42 HOH TIP . 
D 4 HOH A 31 349 43 HOH TIP . 
D 4 HOH A 32 350 45 HOH TIP . 
D 4 HOH A 33 351 48 HOH TIP . 
D 4 HOH A 34 352 49 HOH TIP . 
D 4 HOH A 35 353 50 HOH TIP . 
D 4 HOH A 36 354 52 HOH TIP . 
D 4 HOH A 37 355 53 HOH TIP . 
D 4 HOH A 38 356 54 HOH TIP . 
D 4 HOH A 39 357 55 HOH TIP . 
D 4 HOH A 40 358 57 HOH TIP . 
D 4 HOH A 41 359 61 HOH TIP . 
D 4 HOH A 42 360 65 HOH TIP . 
D 4 HOH A 43 361 68 HOH TIP . 
D 4 HOH A 44 362 70 HOH TIP . 
D 4 HOH A 45 363 71 HOH TIP . 
D 4 HOH A 46 364 72 HOH TIP . 
D 4 HOH A 47 365 76 HOH TIP . 
D 4 HOH A 48 366 77 HOH TIP . 
D 4 HOH A 49 367 78 HOH TIP . 
D 4 HOH A 50 368 79 HOH TIP . 
D 4 HOH A 51 369 80 HOH TIP . 
D 4 HOH A 52 370 81 HOH TIP . 
D 4 HOH A 53 371 83 HOH TIP . 
D 4 HOH A 54 372 86 HOH TIP . 
D 4 HOH A 55 373 88 HOH TIP . 
D 4 HOH A 56 374 89 HOH TIP . 
D 4 HOH A 57 375 90 HOH TIP . 
D 4 HOH A 58 376 91 HOH TIP . 
D 4 HOH A 59 377 92 HOH TIP . 
D 4 HOH A 60 378 93 HOH TIP . 
D 4 HOH A 61 379 94 HOH TIP . 
D 4 HOH A 62 380 95 HOH TIP . 
D 4 HOH A 63 381 96 HOH TIP . 
D 4 HOH A 64 382 97 HOH TIP . 
D 4 HOH A 65 383 98 HOH TIP . 
D 4 HOH A 66 384 99 HOH TIP . 
D 4 HOH A 67 385 100 HOH TIP . 
D 4 HOH A 68 386 101 HOH TIP . 
D 4 HOH A 69 387 102 HOH TIP . 
D 4 HOH A 70 388 103 HOH TIP . 
D 4 HOH A 71 389 105 HOH TIP . 
D 4 HOH A 72 390 107 HOH TIP . 
D 4 HOH A 73 391 108 HOH TIP . 
D 4 HOH A 74 392 109 HOH TIP . 
D 4 HOH A 75 393 110 HOH TIP . 
D 4 HOH A 76 394 111 HOH TIP . 
D 4 HOH A 77 395 112 HOH TIP . 
D 4 HOH A 78 396 113 HOH TIP . 
D 4 HOH A 79 397 114 HOH TIP . 
D 4 HOH A 80 398 115 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 TA6 . . . C 3 10.144 4.292 12.394 1 38.93 ? O1 TA6 501 A 1 
HETATM 2 C C1 TA6 . . . C 3 9.409 4.139 11.166 1 38.5 ? C1 TA6 501 A 1 
HETATM 3 C C2 TA6 . . . C 3 9.018 2.671 11.03 1 39.32 ? C2 TA6 501 A 1 
HETATM 4 O O2 TA6 . . . C 3 10.236 1.891 11.039 1 43.55 ? O2 TA6 501 A 1 
HETATM 5 C C3 TA6 . . . C 3 8.231 2.416 9.727 1 37.27 ? C3 TA6 501 A 1 
HETATM 6 O O3 TA6 . . . C 3 9.153 2.02 8.702 1 34.33 ? O3 TA6 501 A 1 
HETATM 7 C C4 TA6 . . . C 3 7.177 1.337 10.112 1 37.5 ? C4 TA6 501 A 1 
HETATM 8 O O4 TA6 . . . C 3 7.69 -0.032 10.019 1 31.29 ? O4 TA6 501 A 1 
HETATM 9 C C5 TA6 . . . C 3 6.857 1.771 11.533 1 40.1 ? C5 TA6 501 A 1 
HETATM 10 O O5 TA6 . . . C 3 8.123 2.259 12.122 1 40.67 ? O5 TA6 501 A 1 
HETATM 11 C C6 TA6 . . . C 3 6.333 0.678 12.479 1 45.63 ? C6 TA6 501 A 1 
HETATM 12 O O6 TA6 . . . C 3 6.16 1.322 13.769 1 48.66 ? O6 TA6 501 A 1 
HETATM 13 P P TA6 . . . C 3 5.618 0.603 15.096 1 47.61 ? P TA6 501 A 1 
HETATM 14 O O1P TA6 . . . C 3 4.077 0.11 14.786 1 51.18 ? O1P TA6 501 A 1 
HETATM 15 O O2P TA6 . . . C 3 6.45 -0.789 15.45 1 43.24 ? O2P TA6 501 A 1 
HETATM 16 O O3P TA6 . . . C 3 5.632 1.584 16.249 1 47.5 ? O3P TA6 501 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#