data_3JUP
#
_model_server_result.job_id            MnD8_Kq-Yw_WQHpcpJvNoQ 
_model_server_result.datetime_utc      '2024-10-20 19:39:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jup 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    3JUP 
#
_exptl.entry_id    3JUP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              298.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-bromo-2-[(3S)-piperidin-3-ylamino]benzoate 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3JUP 
_cell.length_a            64.72 
_cell.length_b            64.72 
_cell.length_c            160.76 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JUP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C12 H14 Br N2 O2 -1' 
_chem_comp.formula_weight    298.156 
_chem_comp.id                AKD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-bromo-2-[(3S)-piperidin-3-ylamino]benzoate 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAM AKD sing 1 n n 
OAB CAM AKD doub 2 n n 
BRAC CAN AKD sing 3 n n 
CAD CAE AKD doub 4 n y 
CAD CAN AKD sing 5 n y 
CAE CAO AKD sing 6 n y 
CAF CAN AKD doub 7 n y 
CAF CAP AKD sing 8 n y 
CAG CAH AKD sing 9 n n 
CAG CAI AKD sing 10 n n 
CAH NAK AKD sing 11 n n 
CAI CAQ AKD sing 12 n n 
CAJ NAK AKD sing 13 n n 
CAJ CAQ AKD sing 14 n n 
NAL CAO AKD sing 15 n n 
NAL CAQ AKD sing 16 n n 
CAM CAP AKD sing 17 n n 
CAO CAP AKD doub 18 n y 
CAD HAD AKD sing 19 n n 
CAE HAE AKD sing 20 n n 
CAF HAF AKD sing 21 n n 
CAG HAG AKD sing 22 n n 
CAG HAGA AKD sing 23 n n 
CAH HAH AKD sing 24 n n 
CAH HAHA AKD sing 25 n n 
CAI HAI AKD sing 26 n n 
CAI HAIA AKD sing 27 n n 
CAJ HAJ AKD sing 28 n n 
CAJ HAJA AKD sing 29 n n 
NAK HNAK AKD sing 30 n n 
NAL HNAL AKD sing 31 n n 
CAQ HAQ AKD sing 32 n n 
#
_atom_sites.entry_id                     3JUP 
_atom_sites.fract_transf_matrix[1][1]    0.015451 
_atom_sites.fract_transf_matrix[1][2]    0.008921 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00622 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AKD A 1 500 500 AKD AKD . 
D 2 AKD B 1 500 500 AKD AKD . 
E 3 HOH A 1 166 1 HOH HOH . 
E 3 HOH A 2 167 6 HOH HOH . 
E 3 HOH A 3 168 9 HOH HOH . 
E 3 HOH A 4 169 10 HOH HOH . 
E 3 HOH A 5 170 12 HOH HOH . 
E 3 HOH A 6 171 13 HOH HOH . 
E 3 HOH A 7 172 14 HOH HOH . 
E 3 HOH A 8 173 15 HOH HOH . 
E 3 HOH A 9 174 16 HOH HOH . 
E 3 HOH A 10 175 18 HOH HOH . 
E 3 HOH A 11 176 19 HOH HOH . 
E 3 HOH A 12 177 21 HOH HOH . 
E 3 HOH A 13 178 25 HOH HOH . 
E 3 HOH A 14 179 26 HOH HOH . 
E 3 HOH A 15 180 30 HOH HOH . 
E 3 HOH A 16 181 31 HOH HOH . 
E 3 HOH A 17 182 36 HOH HOH . 
E 3 HOH A 18 183 37 HOH HOH . 
E 3 HOH A 19 184 39 HOH HOH . 
E 3 HOH A 20 185 185 HOH HOH . 
E 3 HOH A 21 186 42 HOH HOH . 
E 3 HOH A 22 187 45 HOH HOH . 
E 3 HOH A 23 188 48 HOH HOH . 
E 3 HOH A 24 189 49 HOH HOH . 
E 3 HOH A 25 190 52 HOH HOH . 
E 3 HOH A 26 191 53 HOH HOH . 
E 3 HOH A 27 192 55 HOH HOH . 
E 3 HOH A 28 193 58 HOH HOH . 
E 3 HOH A 29 194 60 HOH HOH . 
E 3 HOH A 30 195 61 HOH HOH . 
E 3 HOH A 31 196 196 HOH HOH . 
E 3 HOH A 32 197 65 HOH HOH . 
E 3 HOH A 33 198 198 HOH HOH . 
E 3 HOH A 34 199 67 HOH HOH . 
E 3 HOH A 35 200 200 HOH HOH . 
E 3 HOH A 36 201 201 HOH HOH . 
E 3 HOH A 37 202 202 HOH HOH . 
E 3 HOH A 38 203 203 HOH HOH . 
E 3 HOH A 39 204 68 HOH HOH . 
E 3 HOH A 40 205 69 HOH HOH . 
E 3 HOH A 41 206 70 HOH HOH . 
E 3 HOH A 42 207 71 HOH HOH . 
E 3 HOH A 43 208 72 HOH HOH . 
E 3 HOH A 44 209 73 HOH HOH . 
E 3 HOH A 45 210 74 HOH HOH . 
E 3 HOH A 46 211 75 HOH HOH . 
E 3 HOH A 47 212 76 HOH HOH . 
E 3 HOH A 48 213 77 HOH HOH . 
E 3 HOH A 49 214 78 HOH HOH . 
E 3 HOH A 50 215 79 HOH HOH . 
E 3 HOH A 51 216 80 HOH HOH . 
E 3 HOH A 52 217 81 HOH HOH . 
E 3 HOH A 53 218 82 HOH HOH . 
E 3 HOH A 54 219 83 HOH HOH . 
E 3 HOH A 55 220 84 HOH HOH . 
E 3 HOH A 56 221 98 HOH HOH . 
E 3 HOH A 57 222 107 HOH HOH . 
E 3 HOH A 58 223 108 HOH HOH . 
E 3 HOH A 59 224 109 HOH HOH . 
E 3 HOH A 60 225 110 HOH HOH . 
E 3 HOH A 61 226 111 HOH HOH . 
E 3 HOH A 62 227 112 HOH HOH . 
E 3 HOH A 63 228 113 HOH HOH . 
E 3 HOH A 64 229 114 HOH HOH . 
E 3 HOH A 65 230 115 HOH HOH . 
E 3 HOH A 66 231 116 HOH HOH . 
E 3 HOH A 67 232 117 HOH HOH . 
E 3 HOH A 68 233 118 HOH HOH . 
E 3 HOH A 69 234 119 HOH HOH . 
E 3 HOH A 70 235 120 HOH HOH . 
E 3 HOH A 71 236 121 HOH HOH . 
E 3 HOH A 72 237 122 HOH HOH . 
E 3 HOH A 73 238 123 HOH HOH . 
E 3 HOH A 74 239 124 HOH HOH . 
E 3 HOH A 75 240 125 HOH HOH . 
E 3 HOH A 76 241 126 HOH HOH . 
E 3 HOH A 77 242 127 HOH HOH . 
E 3 HOH A 78 243 128 HOH HOH . 
E 3 HOH A 79 244 130 HOH HOH . 
E 3 HOH A 80 245 131 HOH HOH . 
E 3 HOH A 81 246 132 HOH HOH . 
E 3 HOH A 82 247 134 HOH HOH . 
E 3 HOH A 83 248 135 HOH HOH . 
E 3 HOH A 84 249 136 HOH HOH . 
E 3 HOH A 85 250 137 HOH HOH . 
E 3 HOH A 86 251 138 HOH HOH . 
E 3 HOH A 87 252 139 HOH HOH . 
E 3 HOH A 88 253 140 HOH HOH . 
E 3 HOH A 89 254 141 HOH HOH . 
E 3 HOH A 90 255 142 HOH HOH . 
E 3 HOH A 91 256 143 HOH HOH . 
E 3 HOH A 92 257 144 HOH HOH . 
E 3 HOH A 93 258 145 HOH HOH . 
E 3 HOH A 94 259 146 HOH HOH . 
E 3 HOH A 95 260 147 HOH HOH . 
E 3 HOH A 96 261 148 HOH HOH . 
E 3 HOH A 97 262 150 HOH HOH . 
E 3 HOH A 98 263 153 HOH HOH . 
F 3 HOH B 1 166 166 HOH HOH . 
F 3 HOH B 2 167 167 HOH HOH . 
F 3 HOH B 3 168 168 HOH HOH . 
F 3 HOH B 4 169 169 HOH HOH . 
F 3 HOH B 5 170 170 HOH HOH . 
F 3 HOH B 6 171 171 HOH HOH . 
F 3 HOH B 7 172 172 HOH HOH . 
F 3 HOH B 8 173 173 HOH HOH . 
F 3 HOH B 9 174 174 HOH HOH . 
F 3 HOH B 10 175 175 HOH HOH . 
F 3 HOH B 11 176 176 HOH HOH . 
F 3 HOH B 12 177 177 HOH HOH . 
F 3 HOH B 13 178 178 HOH HOH . 
F 3 HOH B 14 179 179 HOH HOH . 
F 3 HOH B 15 180 180 HOH HOH . 
F 3 HOH B 16 181 181 HOH HOH . 
F 3 HOH B 17 182 182 HOH HOH . 
F 3 HOH B 18 183 183 HOH HOH . 
F 3 HOH B 19 184 184 HOH HOH . 
F 3 HOH B 20 185 2 HOH HOH . 
F 3 HOH B 21 186 186 HOH HOH . 
F 3 HOH B 22 187 187 HOH HOH . 
F 3 HOH B 23 188 188 HOH HOH . 
F 3 HOH B 24 189 189 HOH HOH . 
F 3 HOH B 25 190 190 HOH HOH . 
F 3 HOH B 26 191 191 HOH HOH . 
F 3 HOH B 27 192 192 HOH HOH . 
F 3 HOH B 28 193 193 HOH HOH . 
F 3 HOH B 29 194 194 HOH HOH . 
F 3 HOH B 30 195 195 HOH HOH . 
F 3 HOH B 31 196 3 HOH HOH . 
F 3 HOH B 32 197 197 HOH HOH . 
F 3 HOH B 33 198 4 HOH HOH . 
F 3 HOH B 34 199 199 HOH HOH . 
F 3 HOH B 35 200 5 HOH HOH . 
F 3 HOH B 36 201 7 HOH HOH . 
F 3 HOH B 37 202 8 HOH HOH . 
F 3 HOH B 38 203 11 HOH HOH . 
F 3 HOH B 39 204 204 HOH HOH . 
F 3 HOH B 40 205 205 HOH HOH . 
F 3 HOH B 41 206 206 HOH HOH . 
F 3 HOH B 42 207 17 HOH HOH . 
F 3 HOH B 43 208 20 HOH HOH . 
F 3 HOH B 44 209 22 HOH HOH . 
F 3 HOH B 45 210 23 HOH HOH . 
F 3 HOH B 46 211 24 HOH HOH . 
F 3 HOH B 47 212 27 HOH HOH . 
F 3 HOH B 48 213 28 HOH HOH . 
F 3 HOH B 49 214 29 HOH HOH . 
F 3 HOH B 50 215 32 HOH HOH . 
F 3 HOH B 51 216 33 HOH HOH . 
F 3 HOH B 52 217 34 HOH HOH . 
F 3 HOH B 53 218 35 HOH HOH . 
F 3 HOH B 54 219 38 HOH HOH . 
F 3 HOH B 55 220 40 HOH HOH . 
F 3 HOH B 56 221 41 HOH HOH . 
F 3 HOH B 57 222 43 HOH HOH . 
F 3 HOH B 58 223 44 HOH HOH . 
F 3 HOH B 59 224 46 HOH HOH . 
F 3 HOH B 60 225 47 HOH HOH . 
F 3 HOH B 61 226 50 HOH HOH . 
F 3 HOH B 62 227 51 HOH HOH . 
F 3 HOH B 63 228 54 HOH HOH . 
F 3 HOH B 64 229 56 HOH HOH . 
F 3 HOH B 65 230 57 HOH HOH . 
F 3 HOH B 66 231 59 HOH HOH . 
F 3 HOH B 67 232 62 HOH HOH . 
F 3 HOH B 68 233 63 HOH HOH . 
F 3 HOH B 69 234 64 HOH HOH . 
F 3 HOH B 70 235 66 HOH HOH . 
F 3 HOH B 71 236 85 HOH HOH . 
F 3 HOH B 72 237 86 HOH HOH . 
F 3 HOH B 73 238 87 HOH HOH . 
F 3 HOH B 74 239 88 HOH HOH . 
F 3 HOH B 75 240 89 HOH HOH . 
F 3 HOH B 76 241 90 HOH HOH . 
F 3 HOH B 77 242 91 HOH HOH . 
F 3 HOH B 78 243 92 HOH HOH . 
F 3 HOH B 79 244 93 HOH HOH . 
F 3 HOH B 80 245 94 HOH HOH . 
F 3 HOH B 81 246 95 HOH HOH . 
F 3 HOH B 82 247 96 HOH HOH . 
F 3 HOH B 83 248 97 HOH HOH . 
F 3 HOH B 84 249 99 HOH HOH . 
F 3 HOH B 85 250 100 HOH HOH . 
F 3 HOH B 86 251 101 HOH HOH . 
F 3 HOH B 87 252 102 HOH HOH . 
F 3 HOH B 88 253 103 HOH HOH . 
F 3 HOH B 89 254 104 HOH HOH . 
F 3 HOH B 90 255 105 HOH HOH . 
F 3 HOH B 91 256 106 HOH HOH . 
F 3 HOH B 92 257 129 HOH HOH . 
F 3 HOH B 93 258 133 HOH HOH . 
F 3 HOH B 94 259 149 HOH HOH . 
F 3 HOH B 95 260 151 HOH HOH . 
F 3 HOH B 96 261 152 HOH HOH . 
F 3 HOH B 97 262 154 HOH HOH . 
F 3 HOH B 98 263 155 HOH HOH . 
F 3 HOH B 99 264 156 HOH HOH . 
F 3 HOH B 100 265 157 HOH HOH . 
F 3 HOH B 101 266 158 HOH HOH . 
F 3 HOH B 102 267 159 HOH HOH . 
F 3 HOH B 103 268 160 HOH HOH . 
F 3 HOH B 104 269 161 HOH HOH . 
F 3 HOH B 105 270 162 HOH HOH . 
F 3 HOH B 106 271 163 HOH HOH . 
F 3 HOH B 107 272 164 HOH HOH . 
F 3 HOH B 108 273 165 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA AKD . . . D 2 23.492 14.399 80.099 1 30.84 ? OAA AKD 500 B 1 
HETATM 2 O OAB AKD . . . D 2 25.306 15.236 79.138 1 33.69 ? OAB AKD 500 B 1 
HETATM 3 BR BRAC AKD . . . D 2 21.639 10.701 76.74 1 42.33 ? BRAC AKD 500 B 1 
HETATM 4 C CAD AKD . . . D 2 23.141 12.8 75.43 1 33.93 ? CAD AKD 500 B 1 
HETATM 5 C CAE AKD . . . D 2 23.881 13.977 75.441 1 37.66 ? CAE AKD 500 B 1 
HETATM 6 C CAF AKD . . . D 2 23.078 12.894 77.817 1 31.38 ? CAF AKD 500 B 1 
HETATM 7 C CAG AKD . . . D 2 27.44 17.431 76.844 1 32.97 ? CAG AKD 500 B 1 
HETATM 8 C CAH AKD . . . D 2 28.434 16.372 76.483 1 31.51 ? CAH AKD 500 B 1 
HETATM 9 C CAI AKD . . . D 2 26.442 17.538 75.742 1 32.61 ? CAI AKD 500 B 1 
HETATM 10 C CAJ AKD . . . D 2 26.749 15.139 75.145 1 35.16 ? CAJ AKD 500 B 1 
HETATM 11 N NAK AKD . . . D 2 27.751 15.111 76.203 1 34.59 ? NAK AKD 500 B 1 
HETATM 12 N NAL AKD . . . D 2 24.997 15.747 76.667 1 37.52 ? NAL AKD 500 B 1 
HETATM 13 C CAM AKD . . . D 2 24.236 14.614 79.159 1 28.22 ? CAM AKD 500 B 1 
HETATM 14 C CAN AKD . . . D 2 22.715 12.284 76.608 1 34.07 ? CAN AKD 500 B 1 
HETATM 15 C CAO AKD . . . D 2 24.264 14.597 76.651 1 34.69 ? CAO AKD 500 B 1 
HETATM 16 C CAP AKD . . . D 2 23.827 14.039 77.816 1 32.26 ? CAP AKD 500 B 1 
HETATM 17 C CAQ AKD . . . D 2 25.706 16.243 75.48 1 33.63 ? CAQ AKD 500 B 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#