data_3JVJ
#
_model_server_result.job_id            H0hi6Q2qlfbOHdsw7te4KQ 
_model_server_result.datetime_utc      '2024-12-11 09:30:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jvj 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
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_entry.id    3JVJ 
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_exptl.entry_id    3JVJ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JVJ 
_cell.length_a            34.014 
_cell.length_b            47.442 
_cell.length_c            78.024 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3JVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     3JVJ 
_atom_sites.fract_transf_matrix[1][1]    0.0294 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021078 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 1 1 GOL GOL . 
C 3 EDO A 1 169 1 EDO EDO . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 6 6 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 10 10 HOH HOH . 
D 4 HOH A 10 11 11 HOH HOH . 
D 4 HOH A 11 12 12 HOH HOH . 
D 4 HOH A 12 13 13 HOH HOH . 
D 4 HOH A 13 14 14 HOH HOH . 
D 4 HOH A 14 15 15 HOH HOH . 
D 4 HOH A 15 16 16 HOH HOH . 
D 4 HOH A 16 17 17 HOH HOH . 
D 4 HOH A 17 18 18 HOH HOH . 
D 4 HOH A 18 19 19 HOH HOH . 
D 4 HOH A 19 20 20 HOH HOH . 
D 4 HOH A 20 21 21 HOH HOH . 
D 4 HOH A 21 22 22 HOH HOH . 
D 4 HOH A 22 23 23 HOH HOH . 
D 4 HOH A 23 24 24 HOH HOH . 
D 4 HOH A 24 25 25 HOH HOH . 
D 4 HOH A 25 26 26 HOH HOH . 
D 4 HOH A 26 27 27 HOH HOH . 
D 4 HOH A 27 28 28 HOH HOH . 
D 4 HOH A 28 29 29 HOH HOH . 
D 4 HOH A 29 30 30 HOH HOH . 
D 4 HOH A 30 31 31 HOH HOH . 
D 4 HOH A 31 32 32 HOH HOH . 
D 4 HOH A 32 33 33 HOH HOH . 
D 4 HOH A 33 34 34 HOH HOH . 
D 4 HOH A 34 35 35 HOH HOH . 
D 4 HOH A 35 36 36 HOH HOH . 
D 4 HOH A 36 37 37 HOH HOH . 
D 4 HOH A 37 170 1 HOH HOH . 
D 4 HOH A 38 171 38 HOH HOH . 
D 4 HOH A 39 172 39 HOH HOH . 
D 4 HOH A 40 173 40 HOH HOH . 
D 4 HOH A 41 174 41 HOH HOH . 
D 4 HOH A 42 175 42 HOH HOH . 
D 4 HOH A 43 176 43 HOH HOH . 
D 4 HOH A 44 177 44 HOH HOH . 
D 4 HOH A 45 178 45 HOH HOH . 
D 4 HOH A 46 179 46 HOH HOH . 
D 4 HOH A 47 180 47 HOH HOH . 
D 4 HOH A 48 181 48 HOH HOH . 
D 4 HOH A 49 182 49 HOH HOH . 
D 4 HOH A 50 183 50 HOH HOH . 
D 4 HOH A 51 184 51 HOH HOH . 
D 4 HOH A 52 185 52 HOH HOH . 
D 4 HOH A 53 186 53 HOH HOH . 
D 4 HOH A 54 187 54 HOH HOH . 
D 4 HOH A 55 188 55 HOH HOH . 
D 4 HOH A 56 189 56 HOH HOH . 
D 4 HOH A 57 190 57 HOH HOH . 
D 4 HOH A 58 191 58 HOH HOH . 
D 4 HOH A 59 192 59 HOH HOH . 
D 4 HOH A 60 193 60 HOH HOH . 
D 4 HOH A 61 194 61 HOH HOH . 
D 4 HOH A 62 195 62 HOH HOH . 
D 4 HOH A 63 196 63 HOH HOH . 
D 4 HOH A 64 197 64 HOH HOH . 
D 4 HOH A 65 198 65 HOH HOH . 
D 4 HOH A 66 199 66 HOH HOH . 
D 4 HOH A 67 200 67 HOH HOH . 
D 4 HOH A 68 201 68 HOH HOH . 
D 4 HOH A 69 202 69 HOH HOH . 
D 4 HOH A 70 203 70 HOH HOH . 
D 4 HOH A 71 204 71 HOH HOH . 
D 4 HOH A 72 205 72 HOH HOH . 
D 4 HOH A 73 206 73 HOH HOH . 
D 4 HOH A 74 207 74 HOH HOH . 
D 4 HOH A 75 208 75 HOH HOH . 
D 4 HOH A 76 209 76 HOH HOH . 
D 4 HOH A 77 210 77 HOH HOH . 
D 4 HOH A 78 211 78 HOH HOH . 
D 4 HOH A 79 212 79 HOH HOH . 
D 4 HOH A 80 213 80 HOH HOH . 
D 4 HOH A 81 214 81 HOH HOH . 
D 4 HOH A 82 215 82 HOH HOH . 
D 4 HOH A 83 216 83 HOH HOH . 
D 4 HOH A 84 217 84 HOH HOH . 
D 4 HOH A 85 218 85 HOH HOH . 
D 4 HOH A 86 219 86 HOH HOH . 
D 4 HOH A 87 220 87 HOH HOH . 
D 4 HOH A 88 221 88 HOH HOH . 
D 4 HOH A 89 222 89 HOH HOH . 
D 4 HOH A 90 223 90 HOH HOH . 
D 4 HOH A 91 224 91 HOH HOH . 
D 4 HOH A 92 225 92 HOH HOH . 
D 4 HOH A 93 226 93 HOH HOH . 
D 4 HOH A 94 227 94 HOH HOH . 
D 4 HOH A 95 228 95 HOH HOH . 
D 4 HOH A 96 229 96 HOH HOH . 
D 4 HOH A 97 230 97 HOH HOH . 
D 4 HOH A 98 231 98 HOH HOH . 
D 4 HOH A 99 232 99 HOH HOH . 
D 4 HOH A 100 233 100 HOH HOH . 
D 4 HOH A 101 234 101 HOH HOH . 
D 4 HOH A 102 235 102 HOH HOH . 
D 4 HOH A 103 236 103 HOH HOH . 
D 4 HOH A 104 237 104 HOH HOH . 
D 4 HOH A 105 238 105 HOH HOH . 
D 4 HOH A 106 239 106 HOH HOH . 
D 4 HOH A 107 240 107 HOH HOH . 
D 4 HOH A 108 241 108 HOH HOH . 
D 4 HOH A 109 242 109 HOH HOH . 
D 4 HOH A 110 243 110 HOH HOH . 
D 4 HOH A 111 244 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -5.082 -7.741 -2.123 1 35.11 ? C1 GOL 1 A 1 
HETATM 2 O O1 GOL . . . B 2 -5.864 -6.932 -1.278 1 37.84 ? O1 GOL 1 A 1 
HETATM 3 C C2 GOL . . . B 2 -3.675 -7.263 -1.992 1 33.51 ? C2 GOL 1 A 1 
HETATM 4 O O2 GOL . . . B 2 -2.744 -8.016 -2.721 1 34.63 ? O2 GOL 1 A 1 
HETATM 5 C C3 GOL . . . B 2 -3.411 -7.124 -0.503 1 27.89 ? C3 GOL 1 A 1 
HETATM 6 O O3 GOL . . . B 2 -2.995 -5.778 -0.32 1 31.07 ? O3 GOL 1 A 1 
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_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           374 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
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