data_3JVK
#
_model_server_result.job_id            tgd-CAbnR3PVks_25jKwKw 
_model_server_result.datetime_utc      '2024-11-25 03:04:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jvk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3JVK 
#
_exptl.entry_id    3JVK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JVK 
_cell.length_a            36.131 
_cell.length_b            47.03 
_cell.length_c            77.25 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JVK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLY 2 C GLY 2 1_555 B N ALY 3 C ALY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale2 B C ALY 3 C ALY 3 1_555 B N ALA 4 C ALA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 111 n n 
C1 C2 EDO sing 112 n n 
C1 H11 EDO sing 113 n n 
C1 H12 EDO sing 114 n n 
O1 HO1 EDO sing 115 n n 
C2 O2 EDO sing 116 n n 
C2 H21 EDO sing 117 n n 
C2 H22 EDO sing 118 n n 
O2 HO2 EDO sing 119 n n 
#
_atom_sites.entry_id                     3JVK 
_atom_sites.fract_transf_matrix[1][1]    0.027677 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 1 1 EDO EDO . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 6 6 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 10 10 HOH HOH . 
D 4 HOH A 10 11 11 HOH HOH . 
D 4 HOH A 11 12 12 HOH HOH . 
D 4 HOH A 12 13 13 HOH HOH . 
D 4 HOH A 13 14 14 HOH HOH . 
D 4 HOH A 14 15 15 HOH HOH . 
D 4 HOH A 15 16 16 HOH HOH . 
D 4 HOH A 16 17 17 HOH HOH . 
D 4 HOH A 17 18 18 HOH HOH . 
D 4 HOH A 18 19 19 HOH HOH . 
D 4 HOH A 19 20 20 HOH HOH . 
D 4 HOH A 20 21 21 HOH HOH . 
D 4 HOH A 21 22 22 HOH HOH . 
D 4 HOH A 22 23 23 HOH HOH . 
D 4 HOH A 23 24 24 HOH HOH . 
D 4 HOH A 24 25 25 HOH HOH . 
D 4 HOH A 25 26 26 HOH HOH . 
D 4 HOH A 26 27 27 HOH HOH . 
D 4 HOH A 27 28 28 HOH HOH . 
D 4 HOH A 28 30 30 HOH HOH . 
D 4 HOH A 29 31 31 HOH HOH . 
D 4 HOH A 30 32 32 HOH HOH . 
D 4 HOH A 31 33 33 HOH HOH . 
D 4 HOH A 32 34 34 HOH HOH . 
D 4 HOH A 33 35 35 HOH HOH . 
D 4 HOH A 34 36 36 HOH HOH . 
D 4 HOH A 35 37 37 HOH HOH . 
D 4 HOH A 36 169 1 HOH HOH . 
D 4 HOH A 37 170 38 HOH HOH . 
D 4 HOH A 38 171 39 HOH HOH . 
D 4 HOH A 39 172 40 HOH HOH . 
D 4 HOH A 40 173 41 HOH HOH . 
D 4 HOH A 41 174 42 HOH HOH . 
D 4 HOH A 42 175 43 HOH HOH . 
D 4 HOH A 43 176 44 HOH HOH . 
D 4 HOH A 44 177 45 HOH HOH . 
D 4 HOH A 45 178 46 HOH HOH . 
D 4 HOH A 46 179 47 HOH HOH . 
D 4 HOH A 47 180 48 HOH HOH . 
D 4 HOH A 48 181 49 HOH HOH . 
D 4 HOH A 49 182 50 HOH HOH . 
D 4 HOH A 50 183 51 HOH HOH . 
D 4 HOH A 51 184 52 HOH HOH . 
D 4 HOH A 52 185 53 HOH HOH . 
D 4 HOH A 53 186 54 HOH HOH . 
D 4 HOH A 54 187 55 HOH HOH . 
D 4 HOH A 55 188 56 HOH HOH . 
D 4 HOH A 56 189 57 HOH HOH . 
D 4 HOH A 57 190 58 HOH HOH . 
D 4 HOH A 58 191 59 HOH HOH . 
D 4 HOH A 59 192 60 HOH HOH . 
D 4 HOH A 60 193 61 HOH HOH . 
D 4 HOH A 61 194 62 HOH HOH . 
D 4 HOH A 62 195 63 HOH HOH . 
D 4 HOH A 63 196 64 HOH HOH . 
D 4 HOH A 64 197 65 HOH HOH . 
D 4 HOH A 65 198 67 HOH HOH . 
D 4 HOH A 66 199 68 HOH HOH . 
D 4 HOH A 67 200 69 HOH HOH . 
D 4 HOH A 68 201 70 HOH HOH . 
D 4 HOH A 69 202 71 HOH HOH . 
D 4 HOH A 70 203 72 HOH HOH . 
D 4 HOH A 71 204 73 HOH HOH . 
D 4 HOH A 72 205 74 HOH HOH . 
D 4 HOH A 73 206 75 HOH HOH . 
D 4 HOH A 74 207 76 HOH HOH . 
D 4 HOH A 75 208 77 HOH HOH . 
D 4 HOH A 76 209 78 HOH HOH . 
D 4 HOH A 77 210 79 HOH HOH . 
D 4 HOH A 78 211 80 HOH HOH . 
D 4 HOH A 79 212 81 HOH HOH . 
D 4 HOH A 80 213 82 HOH HOH . 
D 4 HOH A 81 214 83 HOH HOH . 
D 4 HOH A 82 215 84 HOH HOH . 
D 4 HOH A 83 216 85 HOH HOH . 
D 4 HOH A 84 217 86 HOH HOH . 
D 4 HOH A 85 218 87 HOH HOH . 
D 4 HOH A 86 219 88 HOH HOH . 
D 4 HOH A 87 220 89 HOH HOH . 
D 4 HOH A 88 221 90 HOH HOH . 
D 4 HOH A 89 222 91 HOH HOH . 
D 4 HOH A 90 223 92 HOH HOH . 
D 4 HOH A 91 224 93 HOH HOH . 
D 4 HOH A 92 225 94 HOH HOH . 
D 4 HOH A 93 226 95 HOH HOH . 
D 4 HOH A 94 227 96 HOH HOH . 
D 4 HOH A 95 228 97 HOH HOH . 
D 4 HOH A 96 229 98 HOH HOH . 
D 4 HOH A 97 230 99 HOH HOH . 
D 4 HOH A 98 231 100 HOH HOH . 
D 4 HOH A 99 232 101 HOH HOH . 
D 4 HOH A 100 233 102 HOH HOH . 
D 4 HOH A 101 234 103 HOH HOH . 
D 4 HOH A 102 235 104 HOH HOH . 
E 4 HOH C 1 29 29 HOH HOH . 
E 4 HOH C 2 66 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 23.272 -1.706 6.796 1 47.75 ? C1 EDO 1 A 1 
HETATM 2 O O1 EDO . . . C 3 22.126 -2.186 7.5 1 45.33 ? O1 EDO 1 A 1 
HETATM 3 C C2 EDO . . . C 3 24.513 -2.271 7.453 1 47.65 ? C2 EDO 1 A 1 
HETATM 4 O O2 EDO . . . C 3 24.725 -3.613 7.037 1 47.3 ? O2 EDO 1 A 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           4 
#