data_3JVL
#
_model_server_result.job_id            QNqCF6BrmUIYLssn-XFnCQ 
_model_server_result.datetime_utc      '2024-11-25 00:27:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jvl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":468}' 
#
_entry.id    3JVL 
#
_exptl.entry_id    3JVL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JVL 
_cell.length_a            52.06 
_cell.length_b            73.05 
_cell.length_c            32.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     3JVL 
_atom_sites.fract_transf_matrix[1][1]    0.019209 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013689 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.03096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 1 1 EDO EDO . 
C 3 BME A 1 465 1 BME BME . 
D 3 BME A 1 466 1 BME BME . 
E 2 EDO A 1 467 1 EDO EDO . 
F 2 EDO A 1 468 1 EDO EDO . 
G 4 HOH A 1 2 2 HOH HOH . 
G 4 HOH A 2 3 3 HOH HOH . 
G 4 HOH A 3 4 4 HOH HOH . 
G 4 HOH A 4 5 5 HOH HOH . 
G 4 HOH A 5 6 6 HOH HOH . 
G 4 HOH A 6 7 7 HOH HOH . 
G 4 HOH A 7 8 8 HOH HOH . 
G 4 HOH A 8 9 9 HOH HOH . 
G 4 HOH A 9 10 10 HOH HOH . 
G 4 HOH A 10 11 11 HOH HOH . 
G 4 HOH A 11 12 12 HOH HOH . 
G 4 HOH A 12 13 13 HOH HOH . 
G 4 HOH A 13 15 15 HOH HOH . 
G 4 HOH A 14 16 16 HOH HOH . 
G 4 HOH A 15 17 17 HOH HOH . 
G 4 HOH A 16 18 18 HOH HOH . 
G 4 HOH A 17 19 19 HOH HOH . 
G 4 HOH A 18 20 20 HOH HOH . 
G 4 HOH A 19 21 21 HOH HOH . 
G 4 HOH A 20 23 23 HOH HOH . 
G 4 HOH A 21 24 24 HOH HOH . 
G 4 HOH A 22 25 25 HOH HOH . 
G 4 HOH A 23 26 26 HOH HOH . 
G 4 HOH A 24 27 27 HOH HOH . 
G 4 HOH A 25 28 28 HOH HOH . 
G 4 HOH A 26 29 29 HOH HOH . 
G 4 HOH A 27 30 30 HOH HOH . 
G 4 HOH A 28 31 31 HOH HOH . 
G 4 HOH A 29 32 32 HOH HOH . 
G 4 HOH A 30 33 33 HOH HOH . 
G 4 HOH A 31 35 35 HOH HOH . 
G 4 HOH A 32 36 36 HOH HOH . 
G 4 HOH A 33 37 37 HOH HOH . 
G 4 HOH A 34 39 39 HOH HOH . 
G 4 HOH A 35 40 40 HOH HOH . 
G 4 HOH A 36 41 41 HOH HOH . 
G 4 HOH A 37 43 43 HOH HOH . 
G 4 HOH A 38 44 44 HOH HOH . 
G 4 HOH A 39 45 45 HOH HOH . 
G 4 HOH A 40 46 46 HOH HOH . 
G 4 HOH A 41 47 47 HOH HOH . 
G 4 HOH A 42 48 48 HOH HOH . 
G 4 HOH A 43 49 49 HOH HOH . 
G 4 HOH A 44 50 50 HOH HOH . 
G 4 HOH A 45 51 51 HOH HOH . 
G 4 HOH A 46 52 52 HOH HOH . 
G 4 HOH A 47 53 53 HOH HOH . 
G 4 HOH A 48 54 54 HOH HOH . 
G 4 HOH A 49 55 55 HOH HOH . 
G 4 HOH A 50 56 56 HOH HOH . 
G 4 HOH A 51 57 57 HOH HOH . 
G 4 HOH A 52 58 58 HOH HOH . 
G 4 HOH A 53 59 59 HOH HOH . 
G 4 HOH A 54 60 60 HOH HOH . 
G 4 HOH A 55 61 61 HOH HOH . 
G 4 HOH A 56 62 62 HOH HOH . 
G 4 HOH A 57 63 63 HOH HOH . 
G 4 HOH A 58 64 64 HOH HOH . 
G 4 HOH A 59 65 65 HOH HOH . 
G 4 HOH A 60 66 66 HOH HOH . 
G 4 HOH A 61 68 68 HOH HOH . 
G 4 HOH A 62 69 69 HOH HOH . 
G 4 HOH A 63 70 70 HOH HOH . 
G 4 HOH A 64 71 71 HOH HOH . 
G 4 HOH A 65 72 72 HOH HOH . 
G 4 HOH A 66 73 73 HOH HOH . 
G 4 HOH A 67 74 74 HOH HOH . 
G 4 HOH A 68 75 75 HOH HOH . 
G 4 HOH A 69 76 76 HOH HOH . 
G 4 HOH A 70 77 77 HOH HOH . 
G 4 HOH A 71 78 78 HOH HOH . 
G 4 HOH A 72 79 79 HOH HOH . 
G 4 HOH A 73 81 81 HOH HOH . 
G 4 HOH A 74 82 82 HOH HOH . 
G 4 HOH A 75 83 83 HOH HOH . 
G 4 HOH A 76 85 85 HOH HOH . 
G 4 HOH A 77 86 86 HOH HOH . 
G 4 HOH A 78 87 87 HOH HOH . 
G 4 HOH A 79 88 88 HOH HOH . 
G 4 HOH A 80 89 89 HOH HOH . 
G 4 HOH A 81 91 91 HOH HOH . 
G 4 HOH A 82 92 92 HOH HOH . 
G 4 HOH A 83 93 93 HOH HOH . 
G 4 HOH A 84 94 94 HOH HOH . 
G 4 HOH A 85 95 95 HOH HOH . 
G 4 HOH A 86 96 96 HOH HOH . 
G 4 HOH A 87 97 97 HOH HOH . 
G 4 HOH A 88 98 98 HOH HOH . 
G 4 HOH A 89 99 99 HOH HOH . 
G 4 HOH A 90 100 100 HOH HOH . 
G 4 HOH A 91 101 101 HOH HOH . 
G 4 HOH A 92 102 102 HOH HOH . 
G 4 HOH A 93 103 103 HOH HOH . 
G 4 HOH A 94 104 104 HOH HOH . 
G 4 HOH A 95 105 105 HOH HOH . 
G 4 HOH A 96 106 106 HOH HOH . 
G 4 HOH A 97 107 107 HOH HOH . 
G 4 HOH A 98 108 108 HOH HOH . 
G 4 HOH A 99 109 109 HOH HOH . 
G 4 HOH A 100 110 110 HOH HOH . 
G 4 HOH A 101 111 111 HOH HOH . 
G 4 HOH A 102 113 113 HOH HOH . 
G 4 HOH A 103 114 114 HOH HOH . 
G 4 HOH A 104 115 115 HOH HOH . 
G 4 HOH A 105 118 118 HOH HOH . 
G 4 HOH A 106 121 121 HOH HOH . 
G 4 HOH A 107 122 122 HOH HOH . 
G 4 HOH A 108 123 123 HOH HOH . 
G 4 HOH A 109 124 124 HOH HOH . 
G 4 HOH A 110 125 125 HOH HOH . 
G 4 HOH A 111 126 126 HOH HOH . 
G 4 HOH A 112 129 129 HOH HOH . 
G 4 HOH A 113 131 131 HOH HOH . 
G 4 HOH A 114 133 133 HOH HOH . 
G 4 HOH A 115 135 135 HOH HOH . 
G 4 HOH A 116 140 140 HOH HOH . 
G 4 HOH A 117 142 142 HOH HOH . 
G 4 HOH A 118 144 144 HOH HOH . 
G 4 HOH A 119 146 146 HOH HOH . 
G 4 HOH A 120 147 147 HOH HOH . 
G 4 HOH A 121 148 148 HOH HOH . 
G 4 HOH A 122 149 149 HOH HOH . 
G 4 HOH A 123 150 150 HOH HOH . 
G 4 HOH A 124 154 154 HOH HOH . 
G 4 HOH A 125 155 155 HOH HOH . 
G 4 HOH A 126 156 156 HOH HOH . 
G 4 HOH A 127 160 160 HOH HOH . 
G 4 HOH A 128 165 165 HOH HOH . 
G 4 HOH A 129 166 166 HOH HOH . 
G 4 HOH A 130 168 168 HOH HOH . 
G 4 HOH A 131 172 172 HOH HOH . 
G 4 HOH A 132 173 173 HOH HOH . 
G 4 HOH A 133 175 175 HOH HOH . 
G 4 HOH A 134 180 180 HOH HOH . 
G 4 HOH A 135 186 186 HOH HOH . 
G 4 HOH A 136 187 187 HOH HOH . 
G 4 HOH A 137 192 192 HOH HOH . 
G 4 HOH A 138 199 199 HOH HOH . 
G 4 HOH A 139 201 201 HOH HOH . 
G 4 HOH A 140 203 203 HOH HOH . 
G 4 HOH A 141 205 205 HOH HOH . 
G 4 HOH A 142 207 207 HOH HOH . 
G 4 HOH A 143 208 208 HOH HOH . 
G 4 HOH A 144 209 209 HOH HOH . 
G 4 HOH A 145 210 210 HOH HOH . 
G 4 HOH A 146 211 211 HOH HOH . 
G 4 HOH A 147 214 214 HOH HOH . 
G 4 HOH A 148 215 215 HOH HOH . 
G 4 HOH A 149 217 217 HOH HOH . 
G 4 HOH A 150 220 220 HOH HOH . 
G 4 HOH A 151 222 222 HOH HOH . 
G 4 HOH A 152 223 223 HOH HOH . 
G 4 HOH A 153 224 224 HOH HOH . 
G 4 HOH A 154 225 225 HOH HOH . 
G 4 HOH A 155 226 226 HOH HOH . 
G 4 HOH A 156 228 228 HOH HOH . 
G 4 HOH A 157 229 229 HOH HOH . 
G 4 HOH A 158 230 230 HOH HOH . 
G 4 HOH A 159 231 231 HOH HOH . 
G 4 HOH A 160 232 232 HOH HOH . 
G 4 HOH A 161 233 233 HOH HOH . 
G 4 HOH A 162 234 234 HOH HOH . 
G 4 HOH A 163 240 240 HOH HOH . 
G 4 HOH A 164 241 241 HOH HOH . 
G 4 HOH A 165 242 242 HOH HOH . 
G 4 HOH A 166 243 243 HOH HOH . 
G 4 HOH A 167 244 244 HOH HOH . 
G 4 HOH A 168 245 245 HOH HOH . 
G 4 HOH A 169 249 249 HOH HOH . 
G 4 HOH A 170 250 250 HOH HOH . 
G 4 HOH A 171 251 251 HOH HOH . 
G 4 HOH A 172 252 252 HOH HOH . 
G 4 HOH A 173 253 253 HOH HOH . 
G 4 HOH A 174 254 254 HOH HOH . 
G 4 HOH A 175 255 255 HOH HOH . 
G 4 HOH A 176 258 258 HOH HOH . 
G 4 HOH A 177 260 260 HOH HOH . 
G 4 HOH A 178 261 261 HOH HOH . 
G 4 HOH A 179 262 262 HOH HOH . 
G 4 HOH A 180 264 264 HOH HOH . 
G 4 HOH A 181 265 265 HOH HOH . 
G 4 HOH A 182 267 267 HOH HOH . 
G 4 HOH A 183 269 269 HOH HOH . 
G 4 HOH A 184 270 270 HOH HOH . 
G 4 HOH A 185 271 271 HOH HOH . 
G 4 HOH A 186 272 272 HOH HOH . 
G 4 HOH A 187 273 273 HOH HOH . 
G 4 HOH A 188 274 274 HOH HOH . 
G 4 HOH A 189 275 275 HOH HOH . 
G 4 HOH A 190 278 278 HOH HOH . 
G 4 HOH A 191 279 279 HOH HOH . 
G 4 HOH A 192 280 280 HOH HOH . 
G 4 HOH A 193 282 282 HOH HOH . 
G 4 HOH A 194 285 285 HOH HOH . 
G 4 HOH A 195 286 286 HOH HOH . 
G 4 HOH A 196 287 287 HOH HOH . 
G 4 HOH A 197 288 288 HOH HOH . 
G 4 HOH A 198 289 289 HOH HOH . 
G 4 HOH A 199 290 290 HOH HOH . 
G 4 HOH A 200 291 291 HOH HOH . 
G 4 HOH A 201 292 292 HOH HOH . 
G 4 HOH A 202 293 293 HOH HOH . 
G 4 HOH A 203 295 295 HOH HOH . 
G 4 HOH A 204 296 296 HOH HOH . 
G 4 HOH A 205 300 300 HOH HOH . 
G 4 HOH A 206 301 301 HOH HOH . 
G 4 HOH A 207 302 302 HOH HOH . 
G 4 HOH A 208 303 303 HOH HOH . 
G 4 HOH A 209 310 310 HOH HOH . 
G 4 HOH A 210 311 311 HOH HOH . 
G 4 HOH A 211 312 312 HOH HOH . 
G 4 HOH A 212 316 316 HOH HOH . 
G 4 HOH A 213 318 318 HOH HOH . 
G 4 HOH A 214 319 319 HOH HOH . 
G 4 HOH A 215 320 320 HOH HOH . 
G 4 HOH A 216 321 321 HOH HOH . 
G 4 HOH A 217 322 322 HOH HOH . 
G 4 HOH A 218 323 323 HOH HOH . 
G 4 HOH A 219 469 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 2 -19.569 7.822 -2.25 1 22.13 ? C1 EDO 468 A 1 
HETATM 2 O O1 EDO . . . F 2 -20.448 8.427 -3.301 1 27.42 ? O1 EDO 468 A 1 
HETATM 3 C C2 EDO . . . F 2 -19.299 6.33 -2.194 1 17.18 ? C2 EDO 468 A 1 
HETATM 4 O O2 EDO . . . F 2 -20.526 5.864 -2.164 1 22.11 ? O2 EDO 468 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#