data_3JVM
#
_model_server_result.job_id            OwWS7WEeiJjSMzFdV53Jow 
_model_server_result.datetime_utc      '2024-11-25 01:46:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jvm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":467}' 
#
_entry.id    3JVM 
#
_exptl.entry_id    3JVM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JVM 
_cell.length_a            52.1 
_cell.length_b            73.15 
_cell.length_c            32.16 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JVM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     3JVM 
_atom_sites.fract_transf_matrix[1][1]    0.019194 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013671 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031095 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BME A 1 1 1 BME BME . 
C 2 BME A 1 465 1 BME BME . 
D 3 EDO A 1 466 1 EDO EDO . 
E 3 EDO A 1 467 1 EDO EDO . 
F 4 HOH A 1 2 2 HOH HOH . 
F 4 HOH A 2 3 3 HOH HOH . 
F 4 HOH A 3 4 4 HOH HOH . 
F 4 HOH A 4 5 5 HOH HOH . 
F 4 HOH A 5 6 6 HOH HOH . 
F 4 HOH A 6 7 7 HOH HOH . 
F 4 HOH A 7 8 8 HOH HOH . 
F 4 HOH A 8 9 9 HOH HOH . 
F 4 HOH A 9 10 10 HOH HOH . 
F 4 HOH A 10 11 11 HOH HOH . 
F 4 HOH A 11 12 12 HOH HOH . 
F 4 HOH A 12 13 13 HOH HOH . 
F 4 HOH A 13 14 14 HOH HOH . 
F 4 HOH A 14 15 15 HOH HOH . 
F 4 HOH A 15 16 16 HOH HOH . 
F 4 HOH A 16 17 17 HOH HOH . 
F 4 HOH A 17 18 18 HOH HOH . 
F 4 HOH A 18 19 19 HOH HOH . 
F 4 HOH A 19 20 20 HOH HOH . 
F 4 HOH A 20 21 21 HOH HOH . 
F 4 HOH A 21 22 22 HOH HOH . 
F 4 HOH A 22 23 23 HOH HOH . 
F 4 HOH A 23 24 24 HOH HOH . 
F 4 HOH A 24 25 25 HOH HOH . 
F 4 HOH A 25 26 26 HOH HOH . 
F 4 HOH A 26 27 27 HOH HOH . 
F 4 HOH A 27 28 28 HOH HOH . 
F 4 HOH A 28 29 29 HOH HOH . 
F 4 HOH A 29 30 30 HOH HOH . 
F 4 HOH A 30 31 31 HOH HOH . 
F 4 HOH A 31 32 32 HOH HOH . 
F 4 HOH A 32 33 33 HOH HOH . 
F 4 HOH A 33 34 34 HOH HOH . 
F 4 HOH A 34 35 35 HOH HOH . 
F 4 HOH A 35 36 36 HOH HOH . 
F 4 HOH A 36 37 37 HOH HOH . 
F 4 HOH A 37 38 38 HOH HOH . 
F 4 HOH A 38 39 39 HOH HOH . 
F 4 HOH A 39 40 40 HOH HOH . 
F 4 HOH A 40 41 41 HOH HOH . 
F 4 HOH A 41 42 42 HOH HOH . 
F 4 HOH A 42 43 43 HOH HOH . 
F 4 HOH A 43 44 44 HOH HOH . 
F 4 HOH A 44 45 45 HOH HOH . 
F 4 HOH A 45 46 46 HOH HOH . 
F 4 HOH A 46 47 47 HOH HOH . 
F 4 HOH A 47 48 48 HOH HOH . 
F 4 HOH A 48 49 49 HOH HOH . 
F 4 HOH A 49 50 50 HOH HOH . 
F 4 HOH A 50 51 51 HOH HOH . 
F 4 HOH A 51 52 52 HOH HOH . 
F 4 HOH A 52 53 53 HOH HOH . 
F 4 HOH A 53 54 54 HOH HOH . 
F 4 HOH A 54 55 55 HOH HOH . 
F 4 HOH A 55 56 56 HOH HOH . 
F 4 HOH A 56 57 57 HOH HOH . 
F 4 HOH A 57 58 58 HOH HOH . 
F 4 HOH A 58 59 59 HOH HOH . 
F 4 HOH A 59 60 60 HOH HOH . 
F 4 HOH A 60 61 61 HOH HOH . 
F 4 HOH A 61 62 62 HOH HOH . 
F 4 HOH A 62 63 63 HOH HOH . 
F 4 HOH A 63 64 64 HOH HOH . 
F 4 HOH A 64 65 65 HOH HOH . 
F 4 HOH A 65 66 66 HOH HOH . 
F 4 HOH A 66 67 67 HOH HOH . 
F 4 HOH A 67 68 68 HOH HOH . 
F 4 HOH A 68 69 69 HOH HOH . 
F 4 HOH A 69 70 70 HOH HOH . 
F 4 HOH A 70 71 71 HOH HOH . 
F 4 HOH A 71 72 72 HOH HOH . 
F 4 HOH A 72 73 73 HOH HOH . 
F 4 HOH A 73 74 74 HOH HOH . 
F 4 HOH A 74 75 75 HOH HOH . 
F 4 HOH A 75 76 76 HOH HOH . 
F 4 HOH A 76 77 77 HOH HOH . 
F 4 HOH A 77 78 78 HOH HOH . 
F 4 HOH A 78 79 79 HOH HOH . 
F 4 HOH A 79 80 80 HOH HOH . 
F 4 HOH A 80 81 81 HOH HOH . 
F 4 HOH A 81 82 82 HOH HOH . 
F 4 HOH A 82 83 83 HOH HOH . 
F 4 HOH A 83 84 84 HOH HOH . 
F 4 HOH A 84 85 85 HOH HOH . 
F 4 HOH A 85 86 86 HOH HOH . 
F 4 HOH A 86 87 87 HOH HOH . 
F 4 HOH A 87 88 88 HOH HOH . 
F 4 HOH A 88 89 89 HOH HOH . 
F 4 HOH A 89 90 90 HOH HOH . 
F 4 HOH A 90 91 91 HOH HOH . 
F 4 HOH A 91 92 92 HOH HOH . 
F 4 HOH A 92 93 93 HOH HOH . 
F 4 HOH A 93 94 94 HOH HOH . 
F 4 HOH A 94 95 95 HOH HOH . 
F 4 HOH A 95 96 96 HOH HOH . 
F 4 HOH A 96 97 97 HOH HOH . 
F 4 HOH A 97 98 98 HOH HOH . 
F 4 HOH A 98 99 99 HOH HOH . 
F 4 HOH A 99 100 100 HOH HOH . 
F 4 HOH A 100 101 101 HOH HOH . 
F 4 HOH A 101 102 102 HOH HOH . 
F 4 HOH A 102 103 103 HOH HOH . 
F 4 HOH A 103 104 104 HOH HOH . 
F 4 HOH A 104 105 105 HOH HOH . 
F 4 HOH A 105 106 106 HOH HOH . 
F 4 HOH A 106 107 107 HOH HOH . 
F 4 HOH A 107 108 108 HOH HOH . 
F 4 HOH A 108 109 109 HOH HOH . 
F 4 HOH A 109 110 110 HOH HOH . 
F 4 HOH A 110 111 111 HOH HOH . 
F 4 HOH A 111 112 112 HOH HOH . 
F 4 HOH A 112 113 113 HOH HOH . 
F 4 HOH A 113 114 114 HOH HOH . 
F 4 HOH A 114 115 115 HOH HOH . 
F 4 HOH A 115 116 116 HOH HOH . 
F 4 HOH A 116 117 117 HOH HOH . 
F 4 HOH A 117 118 118 HOH HOH . 
F 4 HOH A 118 119 119 HOH HOH . 
F 4 HOH A 119 120 120 HOH HOH . 
F 4 HOH A 120 121 121 HOH HOH . 
F 4 HOH A 121 122 122 HOH HOH . 
F 4 HOH A 122 123 123 HOH HOH . 
F 4 HOH A 123 124 124 HOH HOH . 
F 4 HOH A 124 125 125 HOH HOH . 
F 4 HOH A 125 126 126 HOH HOH . 
F 4 HOH A 126 127 127 HOH HOH . 
F 4 HOH A 127 128 128 HOH HOH . 
F 4 HOH A 128 129 129 HOH HOH . 
F 4 HOH A 129 130 130 HOH HOH . 
F 4 HOH A 130 131 131 HOH HOH . 
F 4 HOH A 131 132 132 HOH HOH . 
F 4 HOH A 132 133 133 HOH HOH . 
F 4 HOH A 133 134 134 HOH HOH . 
F 4 HOH A 134 135 135 HOH HOH . 
F 4 HOH A 135 136 136 HOH HOH . 
F 4 HOH A 136 137 137 HOH HOH . 
F 4 HOH A 137 138 138 HOH HOH . 
F 4 HOH A 138 139 139 HOH HOH . 
F 4 HOH A 139 140 140 HOH HOH . 
F 4 HOH A 140 141 141 HOH HOH . 
F 4 HOH A 141 142 142 HOH HOH . 
F 4 HOH A 142 143 143 HOH HOH . 
F 4 HOH A 143 144 144 HOH HOH . 
F 4 HOH A 144 145 145 HOH HOH . 
F 4 HOH A 145 146 146 HOH HOH . 
F 4 HOH A 146 147 147 HOH HOH . 
F 4 HOH A 147 148 148 HOH HOH . 
F 4 HOH A 148 149 149 HOH HOH . 
F 4 HOH A 149 150 150 HOH HOH . 
F 4 HOH A 150 151 151 HOH HOH . 
F 4 HOH A 151 152 152 HOH HOH . 
F 4 HOH A 152 153 153 HOH HOH . 
F 4 HOH A 153 154 154 HOH HOH . 
F 4 HOH A 154 155 155 HOH HOH . 
F 4 HOH A 155 156 156 HOH HOH . 
F 4 HOH A 156 157 157 HOH HOH . 
F 4 HOH A 157 158 158 HOH HOH . 
F 4 HOH A 158 159 159 HOH HOH . 
F 4 HOH A 159 160 160 HOH HOH . 
F 4 HOH A 160 161 161 HOH HOH . 
F 4 HOH A 161 162 162 HOH HOH . 
F 4 HOH A 162 163 163 HOH HOH . 
F 4 HOH A 163 164 164 HOH HOH . 
F 4 HOH A 164 165 165 HOH HOH . 
F 4 HOH A 165 166 166 HOH HOH . 
F 4 HOH A 166 167 167 HOH HOH . 
F 4 HOH A 167 168 168 HOH HOH . 
F 4 HOH A 168 169 169 HOH HOH . 
F 4 HOH A 169 170 170 HOH HOH . 
F 4 HOH A 170 171 171 HOH HOH . 
F 4 HOH A 171 172 172 HOH HOH . 
F 4 HOH A 172 173 173 HOH HOH . 
F 4 HOH A 173 174 174 HOH HOH . 
F 4 HOH A 174 175 175 HOH HOH . 
F 4 HOH A 175 176 176 HOH HOH . 
F 4 HOH A 176 177 177 HOH HOH . 
F 4 HOH A 177 178 178 HOH HOH . 
F 4 HOH A 178 179 179 HOH HOH . 
F 4 HOH A 179 180 180 HOH HOH . 
F 4 HOH A 180 181 181 HOH HOH . 
F 4 HOH A 181 182 182 HOH HOH . 
F 4 HOH A 182 183 183 HOH HOH . 
F 4 HOH A 183 184 184 HOH HOH . 
F 4 HOH A 184 185 185 HOH HOH . 
F 4 HOH A 185 186 186 HOH HOH . 
F 4 HOH A 186 187 187 HOH HOH . 
F 4 HOH A 187 188 188 HOH HOH . 
F 4 HOH A 188 189 189 HOH HOH . 
F 4 HOH A 189 190 190 HOH HOH . 
F 4 HOH A 190 191 191 HOH HOH . 
F 4 HOH A 191 192 192 HOH HOH . 
F 4 HOH A 192 193 193 HOH HOH . 
F 4 HOH A 193 194 194 HOH HOH . 
F 4 HOH A 194 195 195 HOH HOH . 
F 4 HOH A 195 196 196 HOH HOH . 
F 4 HOH A 196 197 197 HOH HOH . 
F 4 HOH A 197 198 198 HOH HOH . 
F 4 HOH A 198 199 199 HOH HOH . 
F 4 HOH A 199 200 200 HOH HOH . 
F 4 HOH A 200 201 201 HOH HOH . 
F 4 HOH A 201 202 202 HOH HOH . 
F 4 HOH A 202 203 203 HOH HOH . 
F 4 HOH A 203 204 204 HOH HOH . 
F 4 HOH A 204 205 205 HOH HOH . 
F 4 HOH A 205 206 206 HOH HOH . 
F 4 HOH A 206 207 207 HOH HOH . 
F 4 HOH A 207 208 208 HOH HOH . 
F 4 HOH A 208 209 209 HOH HOH . 
F 4 HOH A 209 210 210 HOH HOH . 
F 4 HOH A 210 211 211 HOH HOH . 
F 4 HOH A 211 212 212 HOH HOH . 
F 4 HOH A 212 213 213 HOH HOH . 
F 4 HOH A 213 214 214 HOH HOH . 
F 4 HOH A 214 215 215 HOH HOH . 
F 4 HOH A 215 216 216 HOH HOH . 
F 4 HOH A 216 217 217 HOH HOH . 
F 4 HOH A 217 218 218 HOH HOH . 
F 4 HOH A 218 219 219 HOH HOH . 
F 4 HOH A 219 220 220 HOH HOH . 
F 4 HOH A 220 221 221 HOH HOH . 
F 4 HOH A 221 222 222 HOH HOH . 
F 4 HOH A 222 223 223 HOH HOH . 
F 4 HOH A 223 468 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 -19.51 7.802 -2.141 1 21.74 ? C1 EDO 467 A 1 
HETATM 2 O O1 EDO . . . E 3 -20.486 8.392 -3.131 1 28.7 ? O1 EDO 467 A 1 
HETATM 3 C C2 EDO . . . E 3 -19.286 6.325 -2.004 1 19.01 ? C2 EDO 467 A 1 
HETATM 4 O O2 EDO . . . E 3 -20.617 5.874 -2.037 1 23.61 ? O2 EDO 467 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#