data_3JVR # _model_server_result.job_id c-ByVuzvmCYAhT4E889NVg _model_server_result.datetime_utc '2025-02-05 13:58:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 3JVR # _exptl.entry_id 3JVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.199 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-1-(1H-benzimidazol-2-yl)ethyl (3,4-dichlorophenyl)carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.67 _cell.angle_gamma 90 _cell.entry_id 3JVR _cell.length_a 44.763 _cell.length_b 65.362 _cell.length_c 57.916 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H13 Cl2 N3 O2' _chem_comp.formula_weight 350.199 _chem_comp.id AGX _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-1-(1H-benzimidazol-2-yl)ethyl (3,4-dichlorophenyl)carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C4 AGX doub 1 n y C C1 AGX sing 2 n y C H AGX sing 3 n n N C4 AGX sing 4 n y N C6 AGX sing 5 n y C7 O AGX sing 6 n n O C8 AGX sing 7 n n C13 CL AGX sing 8 n n C1 C2 AGX doub 9 n y C1 H1 AGX sing 10 n n C6 N1 AGX doub 11 n y C5 N1 AGX sing 12 n y C8 O1 AGX doub 13 n n C12 CL1 AGX sing 14 n n C2 C3 AGX sing 15 n y C2 H2 AGX sing 16 n n C8 N2 AGX sing 17 n n N2 C9 AGX sing 18 n n N2 HN2 AGX sing 19 n n C5 C3 AGX doub 20 n y C3 H3 AGX sing 21 n n C4 C5 AGX sing 22 n y C7 C6 AGX sing 23 n n C15 C7 AGX sing 24 n n C7 H7 AGX sing 25 n n C9 C14 AGX doub 26 n y C9 C10 AGX sing 27 n y C10 C11 AGX doub 28 n y C10 H10 AGX sing 29 n n C11 C12 AGX sing 30 n y C11 H11 AGX sing 31 n n C13 C12 AGX doub 32 n y C14 C13 AGX sing 33 n y C14 H14 AGX sing 34 n n C15 H15 AGX sing 35 n n C15 H15A AGX sing 36 n n C15 H15B AGX sing 37 n n N HN AGX sing 38 n n # _atom_sites.entry_id 3JVR _atom_sites.fract_transf_matrix[1][1] 0.02234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001433 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AGX A 1 901 901 AGX AGX . C 3 HOH A 1 500 500 HOH WAT . C 3 HOH A 2 501 501 HOH WAT . C 3 HOH A 3 502 502 HOH WAT . C 3 HOH A 4 503 503 HOH WAT . C 3 HOH A 5 504 504 HOH WAT . C 3 HOH A 6 505 505 HOH WAT . C 3 HOH A 7 506 506 HOH WAT . C 3 HOH A 8 507 507 HOH WAT . C 3 HOH A 9 508 508 HOH WAT . C 3 HOH A 10 510 510 HOH WAT . C 3 HOH A 11 511 511 HOH WAT . C 3 HOH A 12 512 512 HOH WAT . C 3 HOH A 13 513 513 HOH WAT . C 3 HOH A 14 514 514 HOH WAT . C 3 HOH A 15 515 515 HOH WAT . C 3 HOH A 16 516 516 HOH WAT . C 3 HOH A 17 517 517 HOH WAT . C 3 HOH A 18 518 518 HOH WAT . C 3 HOH A 19 519 519 HOH WAT . C 3 HOH A 20 520 520 HOH WAT . C 3 HOH A 21 521 521 HOH WAT . C 3 HOH A 22 522 522 HOH WAT . C 3 HOH A 23 523 523 HOH WAT . C 3 HOH A 24 524 524 HOH WAT . C 3 HOH A 25 525 525 HOH WAT . C 3 HOH A 26 526 526 HOH WAT . C 3 HOH A 27 527 527 HOH WAT . C 3 HOH A 28 528 528 HOH WAT . C 3 HOH A 29 529 529 HOH WAT . C 3 HOH A 30 530 530 HOH WAT . C 3 HOH A 31 531 531 HOH WAT . C 3 HOH A 32 532 532 HOH WAT . C 3 HOH A 33 533 533 HOH WAT . C 3 HOH A 34 534 534 HOH WAT . C 3 HOH A 35 535 535 HOH WAT . C 3 HOH A 36 536 536 HOH WAT . C 3 HOH A 37 537 537 HOH WAT . C 3 HOH A 38 538 538 HOH WAT . C 3 HOH A 39 539 539 HOH WAT . C 3 HOH A 40 540 540 HOH WAT . C 3 HOH A 41 541 541 HOH WAT . C 3 HOH A 42 542 542 HOH WAT . C 3 HOH A 43 544 544 HOH WAT . C 3 HOH A 44 545 545 HOH WAT . C 3 HOH A 45 546 546 HOH WAT . C 3 HOH A 46 547 547 HOH WAT . C 3 HOH A 47 548 548 HOH WAT . C 3 HOH A 48 549 549 HOH WAT . C 3 HOH A 49 550 550 HOH WAT . C 3 HOH A 50 552 552 HOH WAT . C 3 HOH A 51 553 553 HOH WAT . C 3 HOH A 52 554 554 HOH WAT . C 3 HOH A 53 555 555 HOH WAT . C 3 HOH A 54 557 557 HOH WAT . C 3 HOH A 55 558 558 HOH WAT . C 3 HOH A 56 559 559 HOH WAT . C 3 HOH A 57 560 560 HOH WAT . C 3 HOH A 58 561 561 HOH WAT . C 3 HOH A 59 563 563 HOH WAT . C 3 HOH A 60 564 564 HOH WAT . C 3 HOH A 61 565 565 HOH WAT . C 3 HOH A 62 566 566 HOH WAT . C 3 HOH A 63 567 567 HOH WAT . C 3 HOH A 64 568 568 HOH WAT . C 3 HOH A 65 569 569 HOH WAT . C 3 HOH A 66 570 570 HOH WAT . C 3 HOH A 67 571 571 HOH WAT . C 3 HOH A 68 572 572 HOH WAT . C 3 HOH A 69 573 573 HOH WAT . C 3 HOH A 70 574 574 HOH WAT . C 3 HOH A 71 575 575 HOH WAT . C 3 HOH A 72 576 576 HOH WAT . C 3 HOH A 73 577 577 HOH WAT . C 3 HOH A 74 578 578 HOH WAT . C 3 HOH A 75 579 579 HOH WAT . C 3 HOH A 76 582 582 HOH WAT . C 3 HOH A 77 583 583 HOH WAT . C 3 HOH A 78 584 584 HOH WAT . C 3 HOH A 79 585 585 HOH WAT . C 3 HOH A 80 586 586 HOH WAT . C 3 HOH A 81 588 588 HOH WAT . C 3 HOH A 82 589 589 HOH WAT . C 3 HOH A 83 590 590 HOH WAT . C 3 HOH A 84 591 591 HOH WAT . C 3 HOH A 85 592 592 HOH WAT . C 3 HOH A 86 594 594 HOH WAT . C 3 HOH A 87 595 595 HOH WAT . C 3 HOH A 88 596 596 HOH WAT . C 3 HOH A 89 597 597 HOH WAT . C 3 HOH A 90 599 599 HOH WAT . C 3 HOH A 91 600 600 HOH WAT . C 3 HOH A 92 602 602 HOH WAT . C 3 HOH A 93 604 604 HOH WAT . C 3 HOH A 94 605 605 HOH WAT . C 3 HOH A 95 606 606 HOH WAT . C 3 HOH A 96 607 607 HOH WAT . C 3 HOH A 97 609 609 HOH WAT . C 3 HOH A 98 610 610 HOH WAT . C 3 HOH A 99 611 611 HOH WAT . C 3 HOH A 100 612 612 HOH WAT . C 3 HOH A 101 613 613 HOH WAT . C 3 HOH A 102 614 614 HOH WAT . C 3 HOH A 103 615 615 HOH WAT . C 3 HOH A 104 616 616 HOH WAT . C 3 HOH A 105 617 617 HOH WAT . C 3 HOH A 106 618 618 HOH WAT . C 3 HOH A 107 620 620 HOH WAT . C 3 HOH A 108 621 621 HOH WAT . C 3 HOH A 109 622 622 HOH WAT . C 3 HOH A 110 623 623 HOH WAT . C 3 HOH A 111 624 624 HOH WAT . C 3 HOH A 112 625 625 HOH WAT . C 3 HOH A 113 626 626 HOH WAT . C 3 HOH A 114 627 627 HOH WAT . C 3 HOH A 115 628 628 HOH WAT . C 3 HOH A 116 629 629 HOH WAT . C 3 HOH A 117 630 630 HOH WAT . C 3 HOH A 118 631 631 HOH WAT . C 3 HOH A 119 632 632 HOH WAT . C 3 HOH A 120 633 633 HOH WAT . C 3 HOH A 121 634 634 HOH WAT . C 3 HOH A 122 635 635 HOH WAT . C 3 HOH A 123 636 636 HOH WAT . C 3 HOH A 124 637 637 HOH WAT . C 3 HOH A 125 638 638 HOH WAT . C 3 HOH A 126 639 639 HOH WAT . C 3 HOH A 127 641 641 HOH WAT . C 3 HOH A 128 642 642 HOH WAT . C 3 HOH A 129 643 643 HOH WAT . C 3 HOH A 130 644 644 HOH WAT . C 3 HOH A 131 645 645 HOH WAT . C 3 HOH A 132 646 646 HOH WAT . C 3 HOH A 133 647 647 HOH WAT . C 3 HOH A 134 648 648 HOH WAT . C 3 HOH A 135 649 649 HOH WAT . C 3 HOH A 136 650 650 HOH WAT . C 3 HOH A 137 651 651 HOH WAT . C 3 HOH A 138 652 652 HOH WAT . C 3 HOH A 139 654 654 HOH WAT . C 3 HOH A 140 655 655 HOH WAT . C 3 HOH A 141 656 656 HOH WAT . C 3 HOH A 142 657 657 HOH WAT . C 3 HOH A 143 658 658 HOH WAT . C 3 HOH A 144 659 659 HOH WAT . C 3 HOH A 145 660 660 HOH WAT . C 3 HOH A 146 662 662 HOH WAT . C 3 HOH A 147 663 663 HOH WAT . C 3 HOH A 148 664 664 HOH WAT . C 3 HOH A 149 665 665 HOH WAT . C 3 HOH A 150 666 666 HOH WAT . C 3 HOH A 151 667 667 HOH WAT . C 3 HOH A 152 668 668 HOH WAT . C 3 HOH A 153 669 669 HOH WAT . C 3 HOH A 154 670 670 HOH WAT . C 3 HOH A 155 671 671 HOH WAT . C 3 HOH A 156 672 672 HOH WAT . C 3 HOH A 157 673 673 HOH WAT . C 3 HOH A 158 675 675 HOH WAT . C 3 HOH A 159 677 677 HOH WAT . C 3 HOH A 160 678 678 HOH WAT . C 3 HOH A 161 679 679 HOH WAT . C 3 HOH A 162 680 680 HOH WAT . C 3 HOH A 163 681 681 HOH WAT . C 3 HOH A 164 682 682 HOH WAT . C 3 HOH A 165 683 683 HOH WAT . C 3 HOH A 166 684 684 HOH WAT . C 3 HOH A 167 685 685 HOH WAT . C 3 HOH A 168 686 686 HOH WAT . C 3 HOH A 169 687 687 HOH WAT . C 3 HOH A 170 688 688 HOH WAT . C 3 HOH A 171 689 689 HOH WAT . C 3 HOH A 172 690 690 HOH WAT . C 3 HOH A 173 691 691 HOH WAT . C 3 HOH A 174 692 692 HOH WAT . C 3 HOH A 175 693 693 HOH WAT . C 3 HOH A 176 694 694 HOH WAT . C 3 HOH A 177 695 695 HOH WAT . C 3 HOH A 178 696 696 HOH WAT . C 3 HOH A 179 697 697 HOH WAT . C 3 HOH A 180 698 698 HOH WAT . C 3 HOH A 181 699 699 HOH WAT . C 3 HOH A 182 701 701 HOH WAT . C 3 HOH A 183 702 702 HOH WAT . C 3 HOH A 184 703 703 HOH WAT . C 3 HOH A 185 704 704 HOH WAT . C 3 HOH A 186 705 705 HOH WAT . C 3 HOH A 187 706 706 HOH WAT . C 3 HOH A 188 707 707 HOH WAT . C 3 HOH A 189 708 708 HOH WAT . C 3 HOH A 190 710 710 HOH WAT . C 3 HOH A 191 711 711 HOH WAT . C 3 HOH A 192 712 712 HOH WAT . C 3 HOH A 193 713 713 HOH WAT . C 3 HOH A 194 714 714 HOH WAT . C 3 HOH A 195 715 715 HOH WAT . C 3 HOH A 196 716 716 HOH WAT . C 3 HOH A 197 717 717 HOH WAT . C 3 HOH A 198 718 718 HOH WAT . C 3 HOH A 199 719 719 HOH WAT . C 3 HOH A 200 720 720 HOH WAT . C 3 HOH A 201 721 721 HOH WAT . C 3 HOH A 202 722 722 HOH WAT . C 3 HOH A 203 723 723 HOH WAT . C 3 HOH A 204 724 724 HOH WAT . C 3 HOH A 205 725 725 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C AGX . . . B 2 33.502 -0.457 17.245 1 26.87 ? C AGX 901 A 1 HETATM 2 N N AGX . . . B 2 31.696 -2.263 17.244 1 25.98 ? N AGX 901 A 1 HETATM 3 O O AGX . . . B 2 29.634 -4.319 18.349 1 24.27 ? O AGX 901 A 1 HETATM 4 CL CL AGX . . . B 2 25.43 -3.104 24.008 1 22.37 ? CL AGX 901 A 1 HETATM 5 C C1 AGX . . . B 2 34.924 -0.248 17.368 1 27.31 ? C1 AGX 901 A 1 HETATM 6 N N1 AGX . . . B 2 33.095 -4.019 17.565 1 27.35 ? N1 AGX 901 A 1 HETATM 7 O O1 AGX . . . B 2 30.878 -5.037 20.035 1 24.07 ? O1 AGX 901 A 1 HETATM 8 CL CL1 AGX . . . B 2 27.889 -3.352 26.157 1 22.08 ? CL1 AGX 901 A 1 HETATM 9 C C2 AGX . . . B 2 35.81 -1.365 17.57 1 26.76 ? C2 AGX 901 A 1 HETATM 10 N N2 AGX . . . B 2 28.694 -4.219 20.28 1 23.04 ? N2 AGX 901 A 1 HETATM 11 C C3 AGX . . . B 2 35.268 -2.693 17.652 1 27.51 ? C3 AGX 901 A 1 HETATM 12 C C4 AGX . . . B 2 32.991 -1.793 17.33 1 27.45 ? C4 AGX 901 A 1 HETATM 13 C C5 AGX . . . B 2 33.851 -2.876 17.526 1 27.9 ? C5 AGX 901 A 1 HETATM 14 C C6 AGX . . . B 2 31.817 -3.612 17.391 1 26.18 ? C6 AGX 901 A 1 HETATM 15 C C7 AGX . . . B 2 30.68 -4.618 17.371 1 25.52 ? C7 AGX 901 A 1 HETATM 16 C C8 AGX . . . B 2 29.818 -4.562 19.669 1 24 ? C8 AGX 901 A 1 HETATM 17 C C9 AGX . . . B 2 28.606 -4.025 21.66 1 21.63 ? C9 AGX 901 A 1 HETATM 18 C C10 AGX . . . B 2 29.681 -4.138 22.614 1 20.59 ? C10 AGX 901 A 1 HETATM 19 C C11 AGX . . . B 2 29.44 -3.923 23.998 1 22.41 ? C11 AGX 901 A 1 HETATM 20 C C12 AGX . . . B 2 28.127 -3.596 24.461 1 21.14 ? C12 AGX 901 A 1 HETATM 21 C C13 AGX . . . B 2 27.046 -3.484 23.51 1 22.75 ? C13 AGX 901 A 1 HETATM 22 C C14 AGX . . . B 2 27.3 -3.697 22.118 1 21.38 ? C14 AGX 901 A 1 HETATM 23 C C15 AGX . . . B 2 29.787 -4.602 16.204 1 25.43 ? C15 AGX 901 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #