data_3JW3 # _model_server_result.job_id 7wRewFFMt240GJB-CRsOfw _model_server_result.datetime_utc '2025-02-24 12:51:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":207}' # _entry.id 3JW3 # _exptl.entry_id 3JW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JW3 _cell.length_a 75.427 _cell.length_b 75.427 _cell.length_c 67.462 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 3JW3 _atom_sites.fract_transf_matrix[1][1] 0.013258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NAP . D 3 TOP A 1 208 1 TOP TOP . E 2 NDP B 1 207 207 NDP NAP . F 3 TOP B 1 208 1 TOP TOP . G 4 HOH A 1 163 8 HOH HOH . G 4 HOH A 2 164 9 HOH HOH . G 4 HOH A 3 165 12 HOH HOH . G 4 HOH A 4 166 19 HOH HOH . G 4 HOH A 5 167 27 HOH HOH . G 4 HOH A 6 168 30 HOH HOH . G 4 HOH A 7 169 32 HOH HOH . G 4 HOH A 8 170 33 HOH HOH . G 4 HOH A 9 171 41 HOH HOH . G 4 HOH A 10 172 42 HOH HOH . G 4 HOH A 11 173 49 HOH HOH . G 4 HOH A 12 174 51 HOH HOH . G 4 HOH A 13 175 55 HOH HOH . G 4 HOH A 14 176 60 HOH HOH . G 4 HOH A 15 177 66 HOH HOH . G 4 HOH A 16 178 67 HOH HOH . G 4 HOH A 17 179 69 HOH HOH . G 4 HOH A 18 180 71 HOH HOH . G 4 HOH A 19 181 72 HOH HOH . H 4 HOH B 1 163 1 HOH HOH . H 4 HOH B 2 164 2 HOH HOH . H 4 HOH B 3 165 10 HOH HOH . H 4 HOH B 4 166 11 HOH HOH . H 4 HOH B 5 167 15 HOH HOH . H 4 HOH B 6 168 18 HOH HOH . H 4 HOH B 7 169 21 HOH HOH . H 4 HOH B 8 170 23 HOH HOH . H 4 HOH B 9 171 24 HOH HOH . H 4 HOH B 10 172 28 HOH HOH . H 4 HOH B 11 173 29 HOH HOH . H 4 HOH B 12 174 34 HOH HOH . H 4 HOH B 13 175 35 HOH HOH . H 4 HOH B 14 176 40 HOH HOH . H 4 HOH B 15 177 45 HOH HOH . H 4 HOH B 16 178 56 HOH HOH . H 4 HOH B 17 179 65 HOH HOH . H 4 HOH B 18 180 68 HOH HOH . H 4 HOH B 19 181 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 42.208 -33.866 1.991 1 30.62 ? PA NDP 207 A 1 HETATM 2 O O1A NDP . . . C 2 41.611 -33.295 3.224 1 29.95 ? O1A NDP 207 A 1 HETATM 3 O O2A NDP . . . C 2 42.987 -32.885 1.224 1 29.54 ? O2A NDP 207 A 1 HETATM 4 O O5B NDP . . . C 2 43.131 -35.125 2.314 1 30.4 ? O5B NDP 207 A 1 HETATM 5 C C5B NDP . . . C 2 42.581 -36.202 3.03 1 30.4 ? C5B NDP 207 A 1 HETATM 6 C C4B NDP . . . C 2 43.753 -36.953 3.633 1 29.89 ? C4B NDP 207 A 1 HETATM 7 O O4B NDP . . . C 2 44.303 -36.251 4.733 1 29.38 ? O4B NDP 207 A 1 HETATM 8 C C3B NDP . . . C 2 43.364 -38.312 4.177 1 29.07 ? C3B NDP 207 A 1 HETATM 9 O O3B NDP . . . C 2 43.302 -39.281 3.158 1 27.85 ? O3B NDP 207 A 1 HETATM 10 C C2B NDP . . . C 2 44.502 -38.56 5.135 1 28.53 ? C2B NDP 207 A 1 HETATM 11 O O2B NDP . . . C 2 45.63 -38.915 4.382 1 27.29 ? O2B NDP 207 A 1 HETATM 12 C C1B NDP . . . C 2 44.796 -37.176 5.679 1 29.62 ? C1B NDP 207 A 1 HETATM 13 N N9A NDP . . . C 2 44.098 -36.989 6.957 1 30.37 ? N9A NDP 207 A 1 HETATM 14 C C8A NDP . . . C 2 42.768 -36.688 7.13 1 30.25 ? C8A NDP 207 A 1 HETATM 15 N N7A NDP . . . C 2 42.511 -36.586 8.443 1 29.32 ? N7A NDP 207 A 1 HETATM 16 C C5A NDP . . . C 2 43.656 -36.82 9.118 1 29.94 ? C5A NDP 207 A 1 HETATM 17 C C6A NDP . . . C 2 43.948 -36.85 10.476 1 29.82 ? C6A NDP 207 A 1 HETATM 18 N N6A NDP . . . C 2 42.979 -36.603 11.348 1 30.74 ? N6A NDP 207 A 1 HETATM 19 N N1A NDP . . . C 2 45.228 -37.127 10.915 1 29.99 ? N1A NDP 207 A 1 HETATM 20 C C2A NDP . . . C 2 46.22 -37.373 9.979 1 30.47 ? C2A NDP 207 A 1 HETATM 21 N N3A NDP . . . C 2 45.922 -37.348 8.62 1 30.47 ? N3A NDP 207 A 1 HETATM 22 C C4A NDP . . . C 2 44.663 -37.078 8.198 1 30.19 ? C4A NDP 207 A 1 HETATM 23 O O3 NDP . . . C 2 41.094 -34.603 1.093 1 35.14 ? O3 NDP 207 A 1 HETATM 24 P PN NDP . . . C 2 39.636 -34.225 0.512 1 36.5 ? PN NDP 207 A 1 HETATM 25 O O1N NDP . . . C 2 39.339 -35.211 -0.557 1 36.87 ? O1N NDP 207 A 1 HETATM 26 O O2N NDP . . . C 2 38.725 -34.05 1.665 1 37.13 ? O2N NDP 207 A 1 HETATM 27 O O5D NDP . . . C 2 39.906 -32.791 -0.166 1 41.34 ? O5D NDP 207 A 1 HETATM 28 C C5D NDP . . . C 2 40.643 -32.709 -1.37 1 47.79 ? C5D NDP 207 A 1 HETATM 29 C C4D NDP . . . C 2 39.717 -32.29 -2.513 1 52.87 ? C4D NDP 207 A 1 HETATM 30 O O4D NDP . . . C 2 39.328 -30.931 -2.381 1 54.45 ? O4D NDP 207 A 1 HETATM 31 C C3D NDP . . . C 2 40.378 -32.417 -3.875 1 55.2 ? C3D NDP 207 A 1 HETATM 32 O O3D NDP . . . C 2 39.395 -32.842 -4.793 1 55.57 ? O3D NDP 207 A 1 HETATM 33 C C2D NDP . . . C 2 40.82 -31.006 -4.223 1 56.25 ? C2D NDP 207 A 1 HETATM 34 O O2D NDP . . . C 2 40.748 -30.798 -5.619 1 57.26 ? O2D NDP 207 A 1 HETATM 35 C C1D NDP . . . C 2 39.84 -30.129 -3.441 1 56.42 ? C1D NDP 207 A 1 HETATM 36 N N1N NDP . . . C 2 40.431 -28.891 -2.865 1 57.48 ? N1N NDP 207 A 1 HETATM 37 C C2N NDP . . . C 2 39.993 -27.648 -3.282 1 57 ? C2N NDP 207 A 1 HETATM 38 C C3N NDP . . . C 2 40.506 -26.453 -2.754 1 55.97 ? C3N NDP 207 A 1 HETATM 39 C C7N NDP . . . C 2 39.754 -25.14 -2.889 1 55.35 ? C7N NDP 207 A 1 HETATM 40 O O7N NDP . . . C 2 39.721 -24.236 -1.794 1 54.7 ? O7N NDP 207 A 1 HETATM 41 N N7N NDP . . . C 2 39.127 -24.849 -4.035 1 52.93 ? N7N NDP 207 A 1 HETATM 42 C C4N NDP . . . C 2 41.484 -26.562 -1.771 1 56.3 ? C4N NDP 207 A 1 HETATM 43 C C5N NDP . . . C 2 41.921 -27.812 -1.347 1 57.18 ? C5N NDP 207 A 1 HETATM 44 C C6N NDP . . . C 2 41.388 -28.979 -1.891 1 57.21 ? C6N NDP 207 A 1 HETATM 45 P P2B NDP . . . C 2 46.041 -40.447 4.139 1 24.53 ? P2B NDP 207 A 1 HETATM 46 O O1X NDP . . . C 2 46.305 -41.042 5.498 1 23.89 ? O1X NDP 207 A 1 HETATM 47 O O2X NDP . . . C 2 44.904 -41.198 3.504 1 23.9 ? O2X NDP 207 A 1 HETATM 48 O O3X NDP . . . C 2 47.263 -40.487 3.254 1 21.72 ? O3X NDP 207 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #