data_3JW5
#
_model_server_result.job_id            RBvSMZRwJIy5TczvxRBJzQ 
_model_server_result.datetime_utc      '2025-02-24 13:14:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jw5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":207}' 
#
_entry.id    3JW5 
#
_exptl.entry_id    3JW5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JW5 
_cell.length_a            74.991 
_cell.length_b            74.991 
_cell.length_c            67.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JW5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        77 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     3JW5 
_atom_sites.fract_transf_matrix[1][1]    0.013335 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014835 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 207 207 NDP NAP . 
D 3 TOP A 1 208 1 TOP TOP . 
E 2 NDP B 1 207 207 NDP NAP . 
F 3 TOP B 1 208 1 TOP TOP . 
G 4 HOH A 1 163 3 HOH HOH . 
G 4 HOH A 2 164 4 HOH HOH . 
G 4 HOH A 3 165 8 HOH HOH . 
G 4 HOH A 4 166 13 HOH HOH . 
G 4 HOH A 5 167 18 HOH HOH . 
G 4 HOH A 6 168 19 HOH HOH . 
G 4 HOH A 7 169 22 HOH HOH . 
G 4 HOH A 8 170 27 HOH HOH . 
G 4 HOH A 9 171 29 HOH HOH . 
G 4 HOH A 10 172 30 HOH HOH . 
G 4 HOH A 11 173 31 HOH HOH . 
G 4 HOH A 12 174 32 HOH HOH . 
G 4 HOH A 13 175 35 HOH HOH . 
G 4 HOH A 14 176 38 HOH HOH . 
G 4 HOH A 15 177 44 HOH HOH . 
G 4 HOH A 16 178 45 HOH HOH . 
H 4 HOH B 1 163 2 HOH HOH . 
H 4 HOH B 2 164 5 HOH HOH . 
H 4 HOH B 3 165 6 HOH HOH . 
H 4 HOH B 4 166 7 HOH HOH . 
H 4 HOH B 5 167 9 HOH HOH . 
H 4 HOH B 6 168 10 HOH HOH . 
H 4 HOH B 7 169 14 HOH HOH . 
H 4 HOH B 8 170 17 HOH HOH . 
H 4 HOH B 9 171 20 HOH HOH . 
H 4 HOH B 10 172 21 HOH HOH . 
H 4 HOH B 11 173 24 HOH HOH . 
H 4 HOH B 12 174 26 HOH HOH . 
H 4 HOH B 13 175 28 HOH HOH . 
H 4 HOH B 14 176 33 HOH HOH . 
H 4 HOH B 15 177 34 HOH HOH . 
H 4 HOH B 16 178 36 HOH HOH . 
H 4 HOH B 17 179 37 HOH HOH . 
H 4 HOH B 18 180 40 HOH HOH . 
H 4 HOH B 19 181 41 HOH HOH . 
H 4 HOH B 20 182 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 2 33.72 -42.047 -0.292 1 30.49 ? PA NDP 207 A 1 
HETATM 2 O O1A NDP . . . C 2 33.096 -41.423 -1.479 1 29.93 ? O1A NDP 207 A 1 
HETATM 3 O O2A NDP . . . C 2 32.803 -42.972 0.4 1 30.86 ? O2A NDP 207 A 1 
HETATM 4 O O5B NDP . . . C 2 35.035 -42.837 -0.711 1 29.23 ? O5B NDP 207 A 1 
HETATM 5 C C5B NDP . . . C 2 35.774 -42.406 -1.822 1 27.61 ? C5B NDP 207 A 1 
HETATM 6 C C4B NDP . . . C 2 36.688 -43.559 -2.182 1 25.45 ? C4B NDP 207 A 1 
HETATM 7 O O4B NDP . . . C 2 36.152 -44.312 -3.253 1 24.18 ? O4B NDP 207 A 1 
HETATM 8 C C3B NDP . . . C 2 38.059 -43.083 -2.614 1 23.89 ? C3B NDP 207 A 1 
HETATM 9 O O3B NDP . . . C 2 38.905 -42.953 -1.501 1 23.19 ? O3B NDP 207 A 1 
HETATM 10 C C2B NDP . . . C 2 38.47 -44.208 -3.527 1 23.14 ? C2B NDP 207 A 1 
HETATM 11 O O2B NDP . . . C 2 38.826 -45.308 -2.739 1 22.14 ? O2B NDP 207 A 1 
HETATM 12 C C1B NDP . . . C 2 37.173 -44.624 -4.182 1 23.31 ? C1B NDP 207 A 1 
HETATM 13 N N9A NDP . . . C 2 36.971 -43.888 -5.454 1 23.33 ? N9A NDP 207 A 1 
HETATM 14 C C8A NDP . . . C 2 36.657 -42.555 -5.625 1 22.71 ? C8A NDP 207 A 1 
HETATM 15 N N7A NDP . . . C 2 36.555 -42.281 -6.943 1 21.48 ? N7A NDP 207 A 1 
HETATM 16 C C5A NDP . . . C 2 36.799 -43.425 -7.613 1 22.36 ? C5A NDP 207 A 1 
HETATM 17 C C6A NDP . . . C 2 36.828 -43.717 -8.967 1 22.6 ? C6A NDP 207 A 1 
HETATM 18 N N6A NDP . . . C 2 36.585 -42.751 -9.837 1 22.85 ? N6A NDP 207 A 1 
HETATM 19 N N1A NDP . . . C 2 37.11 -45.002 -9.396 1 22.67 ? N1A NDP 207 A 1 
HETATM 20 C C2A NDP . . . C 2 37.366 -45.998 -8.468 1 22.53 ? C2A NDP 207 A 1 
HETATM 21 N N3A NDP . . . C 2 37.338 -45.7 -7.116 1 22.45 ? N3A NDP 207 A 1 
HETATM 22 C C4A NDP . . . C 2 37.06 -44.44 -6.699 1 22.46 ? C4A NDP 207 A 1 
HETATM 23 O O3 NDP . . . C 2 34.31 -40.95 0.728 1 32.46 ? O3 NDP 207 A 1 
HETATM 24 P PN NDP . . . C 2 34.024 -39.375 0.944 1 34.15 ? PN NDP 207 A 1 
HETATM 25 O O1N NDP . . . C 2 35.144 -38.794 1.746 1 32.78 ? O1N NDP 207 A 1 
HETATM 26 O O2N NDP . . . C 2 33.675 -38.822 -0.386 1 32.7 ? O2N NDP 207 A 1 
HETATM 27 O O5D NDP . . . C 2 32.7 -39.406 1.876 1 34.76 ? O5D NDP 207 A 1 
HETATM 28 C C5D NDP . . . C 2 32.733 -39.994 3.165 1 35.69 ? C5D NDP 207 A 1 
HETATM 29 C C4D NDP . . . C 2 32.028 -39.13 4.219 1 36.56 ? C4D NDP 207 A 1 
HETATM 30 O O4D NDP . . . C 2 30.639 -39.04 3.961 1 36.56 ? O4D NDP 207 A 1 
HETATM 31 C C3D NDP . . . C 2 32.131 -39.729 5.614 1 37.22 ? C3D NDP 207 A 1 
HETATM 32 O O3D NDP . . . C 2 32.157 -38.679 6.566 1 37.19 ? O3D NDP 207 A 1 
HETATM 33 C C2D NDP . . . C 2 30.854 -40.543 5.741 1 37.08 ? C2D NDP 207 A 1 
HETATM 34 O O2D NDP . . . C 2 30.515 -40.772 7.09 1 37.9 ? O2D NDP 207 A 1 
HETATM 35 C C1D NDP . . . C 2 29.873 -39.635 5.005 1 36 ? C1D NDP 207 A 1 
HETATM 36 N N1N NDP . . . C 2 28.658 -40.272 4.437 1 35.45 ? N1N NDP 207 A 1 
HETATM 37 C C2N NDP . . . C 2 27.435 -39.725 4.741 1 34.45 ? C2N NDP 207 A 1 
HETATM 38 C C3N NDP . . . C 2 26.247 -40.25 4.233 1 33.43 ? C3N NDP 207 A 1 
HETATM 39 C C7N NDP . . . C 2 24.923 -39.602 4.551 1 32.75 ? C7N NDP 207 A 1 
HETATM 40 O O7N NDP . . . C 2 23.761 -40.016 3.877 1 32.82 ? O7N NDP 207 A 1 
HETATM 41 N N7N NDP . . . C 2 24.852 -38.643 5.472 1 31.71 ? N7N NDP 207 A 1 
HETATM 42 C C4N NDP . . . C 2 26.321 -41.354 3.391 1 33.97 ? C4N NDP 207 A 1 
HETATM 43 C C5N NDP . . . C 2 27.561 -41.909 3.079 1 34.09 ? C5N NDP 207 A 1 
HETATM 44 C C6N NDP . . . C 2 28.732 -41.358 3.599 1 34.5 ? C6N NDP 207 A 1 
HETATM 45 P P2B NDP . . . C 2 40.348 -45.779 -2.644 1 21.15 ? P2B NDP 207 A 1 
HETATM 46 O O1X NDP . . . C 2 40.761 -46.258 -4.013 1 20.8 ? O1X NDP 207 A 1 
HETATM 47 O O2X NDP . . . C 2 41.198 -44.627 -2.19 1 21.36 ? O2X NDP 207 A 1 
HETATM 48 O O3X NDP . . . C 2 40.476 -46.883 -1.636 1 21.54 ? O3X NDP 207 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#