data_3JW6 # _model_server_result.job_id g1m1Hvszebrh6blrvrTAXA _model_server_result.datetime_utc '2025-03-04 16:00:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":246}' # _entry.id 3JW6 # _exptl.entry_id 3JW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JW6 _cell.length_a 103.183 _cell.length_b 103.183 _cell.length_c 103.183 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 103.183 103.183 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 103.183 0 103.183 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 103.183 103.183 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 103.183 103.183 7 'crystal symmetry operation' 7_665 -z+1,-x+1,y 0 0 -1 -1 0 0 0 1 0 103.183 103.183 0 8 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 103.183 0 103.183 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_656 -y+1,z,-x+1 0 -1 0 0 0 1 -1 0 0 103.183 0 103.183 11 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 103.183 103.183 12 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 103.183 103.183 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 132 A CYS 132 1_555 A SG CYS 132 A CYS 132 4_566 ? B ? ? B ? ? ? ? ? ? ? 2.416 ? covale ? covale1 A C THR 82 A THR 82 1_555 A N MSE 83 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C MSE 83 A MSE 83 1_555 A N LYS 84 A LYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C PHE 102 A PHE 102 1_555 A N MSE 103 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale4 A C MSE 103 A MSE 103 1_555 A N GLU 104 A GLU 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale5 A C VAL 115 A VAL 115 1_555 A N MSE 116 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 A C MSE 116 A MSE 116 1_555 A N ASP 117 A ASP 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale7 A C ASN 123 A ASN 123 1_555 A N MSE 124 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 A C MSE 124 A MSE 124 1_555 A N ARG 125 A ARG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3JW6 _atom_sites.fract_transf_matrix[1][1] 0.009692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 246 246 EDO EDO . C 3 HOH A 1 247 247 HOH HOH . C 3 HOH A 2 248 248 HOH HOH . C 3 HOH A 3 249 249 HOH HOH . C 3 HOH A 4 250 250 HOH HOH . C 3 HOH A 5 251 251 HOH HOH . C 3 HOH A 6 252 252 HOH HOH . C 3 HOH A 7 253 253 HOH HOH . C 3 HOH A 8 254 254 HOH HOH . C 3 HOH A 9 255 255 HOH HOH . C 3 HOH A 10 256 256 HOH HOH . C 3 HOH A 11 257 257 HOH HOH . C 3 HOH A 12 258 258 HOH HOH . C 3 HOH A 13 259 259 HOH HOH . C 3 HOH A 14 260 260 HOH HOH . C 3 HOH A 15 261 261 HOH HOH . C 3 HOH A 16 262 262 HOH HOH . C 3 HOH A 17 263 263 HOH HOH . C 3 HOH A 18 264 264 HOH HOH . C 3 HOH A 19 265 265 HOH HOH . C 3 HOH A 20 266 266 HOH HOH . C 3 HOH A 21 267 267 HOH HOH . C 3 HOH A 22 268 268 HOH HOH . C 3 HOH A 23 269 269 HOH HOH . C 3 HOH A 24 270 270 HOH HOH . C 3 HOH A 25 271 271 HOH HOH . C 3 HOH A 26 272 272 HOH HOH . C 3 HOH A 27 273 273 HOH HOH . C 3 HOH A 28 274 274 HOH HOH . C 3 HOH A 29 275 275 HOH HOH . C 3 HOH A 30 276 276 HOH HOH . C 3 HOH A 31 277 277 HOH HOH . C 3 HOH A 32 278 278 HOH HOH . C 3 HOH A 33 279 279 HOH HOH . C 3 HOH A 34 280 280 HOH HOH . C 3 HOH A 35 281 281 HOH HOH . C 3 HOH A 36 282 282 HOH HOH . C 3 HOH A 37 283 283 HOH HOH . C 3 HOH A 38 284 284 HOH HOH . C 3 HOH A 39 285 285 HOH HOH . C 3 HOH A 40 286 286 HOH HOH . C 3 HOH A 41 287 287 HOH HOH . C 3 HOH A 42 288 288 HOH HOH . C 3 HOH A 43 289 289 HOH HOH . C 3 HOH A 44 290 290 HOH HOH . C 3 HOH A 45 291 291 HOH HOH . C 3 HOH A 46 292 292 HOH HOH . C 3 HOH A 47 293 293 HOH HOH . C 3 HOH A 48 294 294 HOH HOH . C 3 HOH A 49 295 295 HOH HOH . C 3 HOH A 50 296 296 HOH HOH . C 3 HOH A 51 297 297 HOH HOH . C 3 HOH A 52 298 298 HOH HOH . C 3 HOH A 53 299 299 HOH HOH . C 3 HOH A 54 300 300 HOH HOH . C 3 HOH A 55 301 301 HOH HOH . C 3 HOH A 56 302 302 HOH HOH . C 3 HOH A 57 303 303 HOH HOH . C 3 HOH A 58 304 304 HOH HOH . C 3 HOH A 59 305 305 HOH HOH . C 3 HOH A 60 306 306 HOH HOH . C 3 HOH A 61 307 307 HOH HOH . C 3 HOH A 62 308 308 HOH HOH . C 3 HOH A 63 309 309 HOH HOH . C 3 HOH A 64 310 310 HOH HOH . C 3 HOH A 65 311 311 HOH HOH . C 3 HOH A 66 312 312 HOH HOH . C 3 HOH A 67 313 313 HOH HOH . C 3 HOH A 68 314 314 HOH HOH . C 3 HOH A 69 315 315 HOH HOH . C 3 HOH A 70 316 316 HOH HOH . C 3 HOH A 71 317 317 HOH HOH . C 3 HOH A 72 318 318 HOH HOH . C 3 HOH A 73 319 319 HOH HOH . C 3 HOH A 74 320 320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 28.965 10.092 61.791 1 22.4 ? C1 EDO 246 A 1 HETATM 2 O O1 EDO . . . B 2 27.768 10.838 61.562 1 24.88 ? O1 EDO 246 A 1 HETATM 3 C C2 EDO . . . B 2 29.688 9.952 60.453 1 21.69 ? C2 EDO 246 A 1 HETATM 4 O O2 EDO . . . B 2 30.153 11.242 60.031 1 24.44 ? O2 EDO 246 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #