data_3JWC # _model_server_result.job_id eDWfMa3dwaVf6rpS71MCYg _model_server_result.datetime_utc '2024-10-19 12:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":207}' # _entry.id 3JWC # _exptl.entry_id 3JWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JWC _cell.length_a 77.845 _cell.length_b 77.845 _cell.length_c 67.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 285 n n PA O2A NDP sing 286 n n PA O5B NDP sing 287 n n PA O3 NDP sing 288 n n O2A HOA2 NDP sing 289 n n O5B C5B NDP sing 290 n n C5B C4B NDP sing 291 n n C5B H51A NDP sing 292 n n C5B H52A NDP sing 293 n n C4B O4B NDP sing 294 n n C4B C3B NDP sing 295 n n C4B H4B NDP sing 296 n n O4B C1B NDP sing 297 n n C3B O3B NDP sing 298 n n C3B C2B NDP sing 299 n n C3B H3B NDP sing 300 n n O3B HO3A NDP sing 301 n n C2B O2B NDP sing 302 n n C2B C1B NDP sing 303 n n C2B H2B NDP sing 304 n n O2B P2B NDP sing 305 n n C1B N9A NDP sing 306 n n C1B H1B NDP sing 307 n n N9A C8A NDP sing 308 n y N9A C4A NDP sing 309 n y C8A N7A NDP doub 310 n y C8A H8A NDP sing 311 n n N7A C5A NDP sing 312 n y C5A C6A NDP sing 313 n y C5A C4A NDP doub 314 n y C6A N6A NDP sing 315 n n C6A N1A NDP doub 316 n y N6A H61A NDP sing 317 n n N6A H62A NDP sing 318 n n N1A C2A NDP sing 319 n y C2A N3A NDP doub 320 n y C2A H2A NDP sing 321 n n N3A C4A NDP sing 322 n y O3 PN NDP sing 323 n n PN O1N NDP doub 324 n n PN O2N NDP sing 325 n n PN O5D NDP sing 326 n n O2N H21N NDP sing 327 n n O5D C5D NDP sing 328 n n C5D C4D NDP sing 329 n n C5D H51N NDP sing 330 n n C5D H52N NDP sing 331 n n C4D O4D NDP sing 332 n n C4D C3D NDP sing 333 n n C4D H4D NDP sing 334 n n O4D C1D NDP sing 335 n n C3D O3D NDP sing 336 n n C3D C2D NDP sing 337 n n C3D H3D NDP sing 338 n n O3D HO3N NDP sing 339 n n C2D O2D NDP sing 340 n n C2D C1D NDP sing 341 n n C2D H2D NDP sing 342 n n O2D HO2N NDP sing 343 n n C1D N1N NDP sing 344 n n C1D H1D NDP sing 345 n n N1N C2N NDP sing 346 n n N1N C6N NDP sing 347 n n C2N C3N NDP doub 348 n n C2N H2N NDP sing 349 n n C3N C7N NDP sing 350 n n C3N C4N NDP sing 351 n n C7N O7N NDP doub 352 n n C7N N7N NDP sing 353 n n N7N H71N NDP sing 354 n n N7N H72N NDP sing 355 n n C4N C5N NDP sing 356 n n C4N H41N NDP sing 357 n n C4N H42N NDP sing 358 n n C5N C6N NDP doub 359 n n C5N H5N NDP sing 360 n n C6N H6N NDP sing 361 n n P2B O1X NDP doub 362 n n P2B O2X NDP sing 363 n n P2B O3X NDP sing 364 n n O2X HOP2 NDP sing 365 n n O3X HOP3 NDP sing 366 n n # _atom_sites.entry_id 3JWC _atom_sites.fract_transf_matrix[1][1] 0.012846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NAP . D 3 EKB A 1 208 1 EKB EKB . E 2 NDP B 1 207 207 NDP NAP . F 3 EKB B 1 208 1 EKB EKB . G 4 HOH A 1 163 1 HOH HOH . G 4 HOH A 2 164 2 HOH HOH . G 4 HOH A 3 165 5 HOH HOH . G 4 HOH A 4 166 7 HOH HOH . G 4 HOH A 5 167 11 HOH HOH . G 4 HOH A 6 168 12 HOH HOH . G 4 HOH A 7 169 18 HOH HOH . G 4 HOH A 8 170 19 HOH HOH . G 4 HOH A 9 171 23 HOH HOH . G 4 HOH A 10 172 24 HOH HOH . G 4 HOH A 11 173 26 HOH HOH . G 4 HOH A 12 174 31 HOH HOH . G 4 HOH A 13 175 32 HOH HOH . G 4 HOH A 14 176 33 HOH HOH . G 4 HOH A 15 177 36 HOH HOH . G 4 HOH A 16 178 37 HOH HOH . G 4 HOH A 17 179 43 HOH HOH . G 4 HOH A 18 180 46 HOH HOH . G 4 HOH A 19 181 47 HOH HOH . G 4 HOH A 20 182 48 HOH HOH . G 4 HOH A 21 183 49 HOH HOH . G 4 HOH A 22 184 53 HOH HOH . G 4 HOH A 23 185 54 HOH HOH . G 4 HOH A 24 186 58 HOH HOH . G 4 HOH A 25 187 61 HOH HOH . G 4 HOH A 26 188 64 HOH HOH . G 4 HOH A 27 189 66 HOH HOH . G 4 HOH A 28 190 67 HOH HOH . G 4 HOH A 29 191 70 HOH HOH . G 4 HOH A 30 192 71 HOH HOH . G 4 HOH A 31 193 72 HOH HOH . G 4 HOH A 32 194 74 HOH HOH . G 4 HOH A 33 195 76 HOH HOH . G 4 HOH A 34 196 77 HOH HOH . G 4 HOH A 35 197 79 HOH HOH . G 4 HOH A 36 198 80 HOH HOH . G 4 HOH A 37 199 81 HOH HOH . G 4 HOH A 38 200 82 HOH HOH . G 4 HOH A 39 201 84 HOH HOH . G 4 HOH A 40 202 85 HOH HOH . G 4 HOH A 41 203 86 HOH HOH . G 4 HOH A 42 204 88 HOH HOH . G 4 HOH A 43 205 89 HOH HOH . G 4 HOH A 44 206 90 HOH HOH . G 4 HOH A 45 209 91 HOH HOH . G 4 HOH A 46 210 92 HOH HOH . G 4 HOH A 47 211 93 HOH HOH . G 4 HOH A 48 212 94 HOH HOH . G 4 HOH A 49 213 96 HOH HOH . G 4 HOH A 50 214 97 HOH HOH . G 4 HOH A 51 215 98 HOH HOH . G 4 HOH A 52 216 100 HOH HOH . G 4 HOH A 53 217 103 HOH HOH . G 4 HOH A 54 218 104 HOH HOH . G 4 HOH A 55 219 105 HOH HOH . G 4 HOH A 56 220 107 HOH HOH . G 4 HOH A 57 221 108 HOH HOH . G 4 HOH A 58 222 110 HOH HOH . G 4 HOH A 59 223 113 HOH HOH . G 4 HOH A 60 224 115 HOH HOH . G 4 HOH A 61 225 119 HOH HOH . G 4 HOH A 62 226 120 HOH HOH . G 4 HOH A 63 227 123 HOH HOH . G 4 HOH A 64 228 124 HOH HOH . H 4 HOH B 1 163 3 HOH HOH . H 4 HOH B 2 164 4 HOH HOH . H 4 HOH B 3 165 6 HOH HOH . H 4 HOH B 4 166 8 HOH HOH . H 4 HOH B 5 167 9 HOH HOH . H 4 HOH B 6 168 10 HOH HOH . H 4 HOH B 7 169 13 HOH HOH . H 4 HOH B 8 170 14 HOH HOH . H 4 HOH B 9 171 15 HOH HOH . H 4 HOH B 10 172 16 HOH HOH . H 4 HOH B 11 173 17 HOH HOH . H 4 HOH B 12 174 20 HOH HOH . H 4 HOH B 13 175 21 HOH HOH . H 4 HOH B 14 176 22 HOH HOH . H 4 HOH B 15 177 25 HOH HOH . H 4 HOH B 16 178 27 HOH HOH . H 4 HOH B 17 179 30 HOH HOH . H 4 HOH B 18 180 34 HOH HOH . H 4 HOH B 19 181 35 HOH HOH . H 4 HOH B 20 182 38 HOH HOH . H 4 HOH B 21 183 40 HOH HOH . H 4 HOH B 22 184 41 HOH HOH . H 4 HOH B 23 185 42 HOH HOH . H 4 HOH B 24 186 45 HOH HOH . H 4 HOH B 25 187 50 HOH HOH . H 4 HOH B 26 188 51 HOH HOH . H 4 HOH B 27 189 52 HOH HOH . H 4 HOH B 28 190 55 HOH HOH . H 4 HOH B 29 191 56 HOH HOH . H 4 HOH B 30 192 57 HOH HOH . H 4 HOH B 31 193 59 HOH HOH . H 4 HOH B 32 194 60 HOH HOH . H 4 HOH B 33 195 63 HOH HOH . H 4 HOH B 34 196 65 HOH HOH . H 4 HOH B 35 197 68 HOH HOH . H 4 HOH B 36 198 69 HOH HOH . H 4 HOH B 37 199 73 HOH HOH . H 4 HOH B 38 200 75 HOH HOH . H 4 HOH B 39 201 78 HOH HOH . H 4 HOH B 40 202 83 HOH HOH . H 4 HOH B 41 203 87 HOH HOH . H 4 HOH B 42 204 95 HOH HOH . H 4 HOH B 43 205 99 HOH HOH . H 4 HOH B 44 206 102 HOH HOH . H 4 HOH B 45 209 106 HOH HOH . H 4 HOH B 46 210 109 HOH HOH . H 4 HOH B 47 211 111 HOH HOH . H 4 HOH B 48 212 112 HOH HOH . H 4 HOH B 49 213 116 HOH HOH . H 4 HOH B 50 214 117 HOH HOH . H 4 HOH B 51 215 121 HOH HOH . H 4 HOH B 52 216 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 43.013 34.356 -0.549 1 17.45 ? PA NDP 207 A 1 HETATM 2 O O1A NDP . . . C 2 42.357 33.814 -1.759 1 17.61 ? O1A NDP 207 A 1 HETATM 3 O O2A NDP . . . C 2 43.662 33.292 0.247 1 16.92 ? O2A NDP 207 A 1 HETATM 4 O O5B NDP . . . C 2 44.035 35.516 -0.94 1 16.68 ? O5B NDP 207 A 1 HETATM 5 C C5B NDP . . . C 2 43.512 36.571 -1.712 1 17.94 ? C5B NDP 207 A 1 HETATM 6 C C4B NDP . . . C 2 44.683 37.264 -2.375 1 17.9 ? C4B NDP 207 A 1 HETATM 7 O O4B NDP . . . C 2 45.216 36.467 -3.415 1 18.35 ? O4B NDP 207 A 1 HETATM 8 C C3B NDP . . . C 2 44.312 38.575 -3.031 1 16.73 ? C3B NDP 207 A 1 HETATM 9 O O3B NDP . . . C 2 44.251 39.61 -2.093 1 15.41 ? O3B NDP 207 A 1 HETATM 10 C C2B NDP . . . C 2 45.47 38.734 -3.987 1 17.34 ? C2B NDP 207 A 1 HETATM 11 O O2B NDP . . . C 2 46.64 39.154 -3.314 1 16.2 ? O2B NDP 207 A 1 HETATM 12 C C1B NDP . . . C 2 45.72 37.299 -4.434 1 19.38 ? C1B NDP 207 A 1 HETATM 13 N N9A NDP . . . C 2 45.011 37.071 -5.708 1 20.42 ? N9A NDP 207 A 1 HETATM 14 C C8A NDP . . . C 2 43.666 36.869 -5.879 1 20.22 ? C8A NDP 207 A 1 HETATM 15 N N7A NDP . . . C 2 43.426 36.722 -7.198 1 20.73 ? N7A NDP 207 A 1 HETATM 16 C C5A NDP . . . C 2 44.59 36.835 -7.874 1 20.81 ? C5A NDP 207 A 1 HETATM 17 C C6A NDP . . . C 2 44.909 36.772 -9.222 1 20.72 ? C6A NDP 207 A 1 HETATM 18 N N6A NDP . . . C 2 43.946 36.558 -10.113 1 20.74 ? N6A NDP 207 A 1 HETATM 19 N N1A NDP . . . C 2 46.223 36.925 -9.636 1 20.56 ? N1A NDP 207 A 1 HETATM 20 C C2A NDP . . . C 2 47.214 37.143 -8.707 1 20.23 ? C2A NDP 207 A 1 HETATM 21 N N3A NDP . . . C 2 46.884 37.206 -7.367 1 21.18 ? N3A NDP 207 A 1 HETATM 22 C C4A NDP . . . C 2 45.598 37.058 -6.953 1 20.93 ? C4A NDP 207 A 1 HETATM 23 O O3 NDP . . . C 2 41.961 35.198 0.319 1 17.16 ? O3 NDP 207 A 1 HETATM 24 P PN NDP . . . C 2 40.442 34.882 0.714 1 17.13 ? PN NDP 207 A 1 HETATM 25 O O1N NDP . . . C 2 39.971 36.025 1.533 1 15.79 ? O1N NDP 207 A 1 HETATM 26 O O2N NDP . . . C 2 39.755 34.485 -0.552 1 16.5 ? O2N NDP 207 A 1 HETATM 27 O O5D NDP . . . C 2 40.58 33.582 1.662 1 17.16 ? O5D NDP 207 A 1 HETATM 28 C C5D NDP . . . C 2 41.065 33.711 2.979 1 17.08 ? C5D NDP 207 A 1 HETATM 29 C C4D NDP . . . C 2 40.083 33.084 3.964 1 17.11 ? C4D NDP 207 A 1 HETATM 30 O O4D NDP . . . C 2 39.863 31.71 3.68 1 16.98 ? O4D NDP 207 A 1 HETATM 31 C C3D NDP . . . C 2 40.628 33.138 5.38 1 17.21 ? C3D NDP 207 A 1 HETATM 32 O O3D NDP . . . C 2 39.511 33.307 6.234 1 16.7 ? O3D NDP 207 A 1 HETATM 33 C C2D NDP . . . C 2 41.264 31.764 5.557 1 16.47 ? C2D NDP 207 A 1 HETATM 34 O O2D NDP . . . C 2 41.334 31.406 6.914 1 15.06 ? O2D NDP 207 A 1 HETATM 35 C C1D NDP . . . C 2 40.299 30.895 4.762 1 15.96 ? C1D NDP 207 A 1 HETATM 36 N N1N NDP . . . C 2 40.848 29.629 4.249 1 15.14 ? N1N NDP 207 A 1 HETATM 37 C C2N NDP . . . C 2 40.153 28.479 4.516 1 14.66 ? C2N NDP 207 A 1 HETATM 38 C C3N NDP . . . C 2 40.608 27.247 4.052 1 14.14 ? C3N NDP 207 A 1 HETATM 39 C C7N NDP . . . C 2 39.887 25.991 4.426 1 13.78 ? C7N NDP 207 A 1 HETATM 40 O O7N NDP . . . C 2 40.067 24.844 3.629 1 14.57 ? O7N NDP 207 A 1 HETATM 41 N N7N NDP . . . C 2 39.08 25.975 5.483 1 12.73 ? N7N NDP 207 A 1 HETATM 42 C C4N NDP . . . C 2 41.768 27.192 3.277 1 15.04 ? C4N NDP 207 A 1 HETATM 43 C C5N NDP . . . C 2 42.468 28.37 3.005 1 14.34 ? C5N NDP 207 A 1 HETATM 44 C C6N NDP . . . C 2 41.995 29.587 3.496 1 15 ? C6N NDP 207 A 1 HETATM 45 P P2B NDP . . . C 2 47.156 40.673 -3.259 1 13.47 ? P2B NDP 207 A 1 HETATM 46 O O1X NDP . . . C 2 47.377 41.228 -4.641 1 12.48 ? O1X NDP 207 A 1 HETATM 47 O O2X NDP . . . C 2 46.115 41.481 -2.532 1 13.12 ? O2X NDP 207 A 1 HETATM 48 O O3X NDP . . . C 2 48.464 40.672 -2.512 1 14.16 ? O3X NDP 207 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #